| 1 |
0 |
0 |
stm2982 |
gcvA |
-98.53 |
0.000000 |
1 -- 73 |
1 -- 73 |
transcriptional regulator GcvA |
|
______________1________________________________________________________________________74\n______________|________________________________________________________________________|\n___________5'-_________________________________________________________________________GCCGC...CGC-3'\n______________ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA\n3'-UUU...UGUGU_________________________________________________________________________-5'\n_____________|________________________________________________________________________|\n_____________74_______________________________________________________________________1\n |
67 -- 73 |
1 -- 7 |
-142.883 kcal/mol |
17.2949 kcal/mol |
26.5914 kcal/mol |
1 74@LB@ | |@LB@ 5'- GCCGC...CGC-3'@LB@ ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA@LB@3'-UUU...UGUGU -5'@LB@ | |@LB@ 74 1@LB@@LB@@LB@Energy -98.53 kcal/mol@LB@Hybridization Energy -142.883 kcal/mol@LB@Unfolding Energy - mRNA 17.2949 kcal/mol@LB@Unfolding Energy - sRNA 26.5914 kcal/mol@LB@@LB@Position - mRNA 1 -- 73@LB@Position - sRNA 1 -- 73@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 86 |
0.004005 |
0.1596 |
stm1961 |
fliS |
-19.11 |
0.024619 |
1 -- 77 |
23 -- 90 |
flagellar export chaperone FliS |
|
______________1__________________________________________________________________________________78\n______________|__________________________________________________________________________________|\n___________5'-_______G_______UU____C________AA_____UGACAAAACAGUACCU_________C____________________CGUUG...AUG-3'\n______________GC__GCA_GACAACG__AACG_CAC_GCUG__AAGCC________________GUCCGUUAG_AACA_GCAU__CGAUGAAAC\n______________||__:||_:|||||:__|||:_|||_:|:|__|||||________________|:||:|:||_||||_||||__||||:||||\n______________CG__UGU_UUGUUGU__UUGU_GUG_UGGC__UUCGG________________CGGGUAGUC_UUGU_CGUA__GCUAUUUUG\n3'-UUU...GUUAA__UU___G_______G_____A___U____A______UUUU__________________________G____AG_________AAAAG...UCA-5'\n_____________|___________________________________________________________________________________|\n_____________91__________________________________________________________________________________22\n |
7 -- 13 |
76 -- 82 |
-54.7378 kcal/mol |
16.9215 kcal/mol |
25.0607 kcal/mol |
1 78@LB@ | |@LB@ 5'- G UU C AA UGACAAAACAGUACCU C CGUUG...AUG-3'@LB@ GC GCA GACAACG AACG CAC GCUG AAGCC GUCCGUUAG AACA GCAU CGAUGAAAC@LB@ || :|| :|||||: |||: ||| :|:| ||||| |:||:|:|| |||| |||| ||||:||||@LB@ CG UGU UUGUUGU UUGU GUG UGGC UUCGG CGGGUAGUC UUGU CGUA GCUAUUUUG@LB@3'-UUU...GUUAA UU G G A U A UUUU G AG AAAAG...UCA-5'@LB@ | |@LB@ 91 22@LB@@LB@@LB@Energy -19.11 kcal/mol@LB@Hybridization Energy -54.7378 kcal/mol@LB@Unfolding Energy - mRNA 16.9215 kcal/mol@LB@Unfolding Energy - sRNA 25.0607 kcal/mol@LB@@LB@Position - mRNA 1 -- 77@LB@Position - sRNA 23 -- 90@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 124 |
0.006123 |
0.1758 |
stm0794 |
bioB |
-18.46 |
0.031660 |
1 -- 37 |
38 -- 79 |
biotin synthase |
|
______________1________________38\n______________|________________|\n___________5'-_________________UUCGG...AGC-3'\n______________AAC_CAGC_UCGCAGCC\n______________|||_||:|_||:||:||\n______________UUG_GUUG_AGUGUUGG\n3'-UUU...UGUUG___U____U________CAUUC...UCA-5'\n_____________|_________________|\n_____________80________________37\n |
9 -- 15 |
63 -- 69 |
-17.7754 kcal/mol |
2.27351 kcal/mol |
6.48115 kcal/mol |
1 38@LB@ | |@LB@ 5'- UUCGG...AGC-3'@LB@ AAC CAGC UCGCAGCC@LB@ ||| ||:| ||:||:||@LB@ UUG GUUG AGUGUUGG@LB@3'-UUU...UGUUG U U CAUUC...UCA-5'@LB@ | |@LB@ 80 37@LB@@LB@@LB@Energy -18.46 kcal/mol@LB@Hybridization Energy -17.7754 kcal/mol@LB@Unfolding Energy - mRNA 2.27351 kcal/mol@LB@Unfolding Energy - sRNA 6.48115 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 38 -- 79@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 127 |
0.006343 |
0.1774 |
stm1751 |
hns |
-12.42 |
0.292757 |
1 -- 14 |
147 -- 162 |
transcriptional regulator |
|
______________1_______________15\n______________|_______________|\n___________5'-________________AUCCC...UAG-3'\n______________GACAGAC__GGUGAGU\n______________|||||||__|||:|:|\n______________CUGUCUG__CCAUUUA\n3'-UUU...GAUAC_______UC_______CAUGU...UCA-5'\n_____________|________________|\n_____________163______________146\n |
8 -- 14 |
147 -- 153 |
-17.2475 kcal/mol |
3.56352 kcal/mol |
3.32093 kcal/mol |
1 15@LB@ | |@LB@ 5'- AUCCC...UAG-3'@LB@ GACAGAC GGUGAGU@LB@ ||||||| |||:|:|@LB@ CUGUCUG CCAUUUA@LB@3'-UUU...GAUAC UC CAUGU...UCA-5'@LB@ | |@LB@ 163 146@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -17.2475 kcal/mol@LB@Unfolding Energy - mRNA 3.56352 kcal/mol@LB@Unfolding Energy - sRNA 3.32093 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 147 -- 162@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 147 -- 153@LB@ |
| 183 |
0.01015 |
0.1966 |
stm0813 |
ybhP |
-18.40 |
0.032407 |
2 -- 54 |
36 -- 90 |
similar to E. coli orf hypothetical protein (AAC73877.1); Blastp hit to AAC73877.1 (253 aa) 86% identity in aa 1 - 253 |
|
_____________1____________________________________55\n_____________|____________________________________|\n__________5'-A____________UA__CU__CA______________GGUUG...UGC-3'\n______________GUAAAUGCAACA__AU__GC___ACAACCG_AGGCC\n______________|:|||::|||||__|:__:|___|||||||_|:|||\n______________CGUUUGUGUUGU__UG__UG___UGUUGGC_UUCGG\n3'-UUU...GUUAA____________UG__U___UAG_______A_____UUUUC...UCA-5'\n_____________|____________________________________|\n_____________91___________________________________35\n |
24 -- 30 |
62 -- 68 |
-32.6929 kcal/mol |
6.87264 kcal/mol |
11.8287 kcal/mol |
1 55@LB@ | |@LB@ 5'-A UA CU CA GGUUG...UGC-3'@LB@ GUAAAUGCAACA AU GC ACAACCG AGGCC@LB@ |:|||::||||| |: :| ||||||| |:|||@LB@ CGUUUGUGUUGU UG UG UGUUGGC UUCGG@LB@3'-UUU...GUUAA UG U UAG A UUUUC...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -18.40 kcal/mol@LB@Hybridization Energy -32.6929 kcal/mol@LB@Unfolding Energy - mRNA 6.87264 kcal/mol@LB@Unfolding Energy - sRNA 11.8287 kcal/mol@LB@@LB@Position - mRNA 2 -- 54@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 54 |
0.002071 |
0.1363 |
stm1429 |
ydhB |
-17.23 |
0.050879 |
3 -- 45 |
36 -- 79 |
putative LysR family transcriptional regulator |
|
_____________2___________________________________46\n_____________|___________________________________|\n5'-CAA...UAUCA________UU__CGCA___________________UUACG...UCA-3'\n______________GACAGACA__GU____GAGUGU__AGGGAGUGAAA\n______________||||||||__||____:|:|||__|||:|||||||\n______________CUGUCUGU__CA____UUUACA__UCCUUCACUUU\n3'-UUU...GAUAC________CC____________UG___________UUCCC...UCA-5'\n_____________|___________________________________|\n_____________80__________________________________35\n |
136 -- 142 |
132 -- 138 |
-30.0385 kcal/mol |
9.87391 kcal/mol |
6.0649 kcal/mol |
2 46@LB@ | |@LB@5'-CAA...UAUCA UU CGCA UUACG...UCA-3'@LB@ GACAGACA GU GAGUGU AGGGAGUGAAA@LB@ |||||||| || :|:||| |||:|||||||@LB@ CUGUCUGU CA UUUACA UCCUUCACUUU@LB@3'-UUU...GAUAC CC UG UUCCC...UCA-5'@LB@ | |@LB@ 80 35@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -30.0385 kcal/mol@LB@Unfolding Energy - mRNA 9.87391 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 3 -- 45@LB@Position - sRNA 36 -- 79@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 16 |
0.0002876 |
0.06194 |
stm1378 |
pykF |
-16.63 |
0.064116 |
5 -- 66 |
31 -- 91 |
pyruvate kinase |
|
_____________4____________________________________________________________________67\n_____________|____________________________________________________________________|\n_______5'-GGAC___A____U_______UA__AU____CCCUUC___U__________C______________A______UCUGC...UGA-3'\n______________UGU_AAAC_CAACGAC__AA__UAUC______CCG_UGGGCUGAAA_GC______GAGCAC_CAUUCC\n______________||:_||||_||||:||__||__:|||______|||_|::||::|||_||______||:|||_||||||\n______________ACG_UUUG_GUUGUUG__UU__GUAG______GGC_AUUCGGUUUU_CG______CUUGUG_GUAAGG\n3'-UUU...GGUUA________U_______UG________UGUU___________________GGUAGU______C______CUAUU...UCA-5'\n_____________|____________________________________________________________________|\n_____________92___________________________________________________________________30\n |
14 -- 20 |
77 -- 83 |
-44.7981 kcal/mol |
9.74365 kcal/mol |
24.1415 kcal/mol |
4 67@LB@ | |@LB@ 5'-GGAC A U UA AU CCCUUC U C A UCUGC...UGA-3'@LB@ UGU AAAC CAACGAC AA UAUC CCG UGGGCUGAAA GC GAGCAC CAUUCC@LB@ ||: |||| ||||:|| || :||| ||| |::||::||| || ||:||| ||||||@LB@ ACG UUUG GUUGUUG UU GUAG GGC AUUCGGUUUU CG CUUGUG GUAAGG@LB@3'-UUU...GGUUA U UG UGUU GGUAGU C CUAUU...UCA-5'@LB@ | |@LB@ 92 30@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -44.7981 kcal/mol@LB@Unfolding Energy - mRNA 9.74365 kcal/mol@LB@Unfolding Energy - sRNA 24.1415 kcal/mol@LB@@LB@Position - mRNA 5 -- 66@LB@Position - sRNA 31 -- 91@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 32 |
0.001017 |
0.1132 |
stm1874 |
N/A |
-30.35 |
0.000300 |
5 -- 53 |
36 -- 83 |
putative inner membrane protein |
|
_____________4__________________________________________________54\n_____________|__________________________________________________|\n_______5'-GGUU___________C______U____CUC________________A_______CCGGC...CCG-3'\n______________CAGCGGCGCAA_CAUUAC_GGCC___AG_CAAGAGCUCAUCA_AACGCGC\n______________||:|::|:|||_|||:||_::||___||_|||:|||:|||||_|||:|||\n______________GUUGUUGUGUU_GUAGUG_UUGG___UC_GUUUUCGGGUAGU_UUGUGCG\n3'-UUU...UUUGU_______________________CAU__G_____________C_______UAAGG...UCA-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________35\n |
47 -- 53 |
36 -- 42 |
-54.7325 kcal/mol |
11.1988 kcal/mol |
22.0738 kcal/mol |
4 54@LB@ | |@LB@ 5'-GGUU C U CUC A CCGGC...CCG-3'@LB@ CAGCGGCGCAA CAUUAC GGCC AG CAAGAGCUCAUCA AACGCGC@LB@ ||:|::|:||| |||:|| ::|| || |||:|||:||||| |||:|||@LB@ GUUGUUGUGUU GUAGUG UUGG UC GUUUUCGGGUAGU UUGUGCG@LB@3'-UUU...UUUGU CAU G C UAAGG...UCA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -30.35 kcal/mol@LB@Hybridization Energy -54.7325 kcal/mol@LB@Unfolding Energy - mRNA 11.1988 kcal/mol@LB@Unfolding Energy - sRNA 22.0738 kcal/mol@LB@@LB@Position - mRNA 5 -- 53@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 91 |
0.004202 |
0.1596 |
stm0387 |
yaiI |
-16.26 |
0.073758 |
5 -- 45 |
23 -- 58 |
similar to E. coli orf hypothetical protein (AAC73490.1); Blastp hit to AAC73490.1 (192 aa) 89% identity in aa 41 - 191 |
|
_____________4____________________________________________46\n_____________|____________________________________________|\n_______5'-GUCC_______AUAGCCUU______AUU________G___A_______CGAUU...CCA-3'\n______________GCCAAGA________GCCCAU____AC_CGCA__CC_AUAAAAC\n______________|||||:|________||||||____||_||||__||_|||||||\n______________CGGUUUU________CGGGUA____UG_GCGU__GG_UAUUUUG\n3'-UUU...GCAUU_____________________GUCU__U____AA__C_______AAAAG...UCA-5'\n_____________|____________________________________________|\n_____________59___________________________________________22\n |
5 -- 11 |
52 -- 58 |
-32.2087 kcal/mol |
3.21436 kcal/mol |
17.1718 kcal/mol |
4 46@LB@ | |@LB@ 5'-GUCC AUAGCCUU AUU G A CGAUU...CCA-3'@LB@ GCCAAGA GCCCAU AC CGCA CC AUAAAAC@LB@ |||||:| |||||| || |||| || |||||||@LB@ CGGUUUU CGGGUA UG GCGU GG UAUUUUG@LB@3'-UUU...GCAUU GUCU U AA C AAAAG...UCA-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -32.2087 kcal/mol@LB@Unfolding Energy - mRNA 3.21436 kcal/mol@LB@Unfolding Energy - sRNA 17.1718 kcal/mol@LB@@LB@Position - mRNA 5 -- 45@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 107 |
0.00529 |
0.1728 |
stm0994 |
mukB |
-11.10 |
0.440174 |
5 -- 20 |
154 -- 167 |
cell division protein MukB |
|
_____________4_________________________21\n_____________|_________________________|\n5'-UGG...UCAGC_______U__________G______AAUAA...CCG-3'\n______________CGGACAG_GG_______A_AGGAAG\n______________|:|||||_||_______|_||||||\n______________GUCUGUC_CC_______U_UCCUUC\n3'-UUU...UACCU__________AUUUACA_G______ACUUU...UCA-5'\n_____________|_________________________|\n_____________168_______________________153\n |
179 -- 185 |
154 -- 160 |
-19.4251 kcal/mol |
3.58038 kcal/mol |
5.99227 kcal/mol |
4 21@LB@ | |@LB@5'-UGG...UCAGC U G AAUAA...CCG-3'@LB@ CGGACAG GG A AGGAAG@LB@ |:||||| || | ||||||@LB@ GUCUGUC CC U UCCUUC@LB@3'-UUU...UACCU AUUUACA G ACUUU...UCA-5'@LB@ | |@LB@ 168 153@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -19.4251 kcal/mol@LB@Unfolding Energy - mRNA 3.58038 kcal/mol@LB@Unfolding Energy - sRNA 5.99227 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 154 -- 167@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 154 -- 160@LB@ |
