| 53 |
0.0004056 |
0.03518 |
pa1750 |
N/A |
-9.05 |
0.272805 |
157 -- 194 |
32 -- 72 |
phospho-2-dehydro-3-deoxyheptonate aldolase |
|
_____________156________________________________________195\n_____________|__________________________________________|\n5'-ACU...GCAGG___C___C____G_______GC___________U_A______ACCAC...CCC-3'\n______________GGG_CUC_CGGC__GCCGGC____C_CGUGACC_G_UUGAGU\n______________|||_|||_|:||__:|||||____|_||:||||_|_||||||\n______________CCC_GAG_GUCG__UGGCCG____G_GCGCUGG_C_AACUCA\n3'-UUU...ACGCA___A___A____AA______ACUA_A_______U________CUGUA...GUU-5'\n_____________|__________________________________________|\n_____________73_________________________________________31\n |
179 -- 185 |
40 -- 46 |
-44.8167 kcal/mol |
16.8729 kcal/mol |
18.8965 kcal/mol |
156 195@LB@ | |@LB@5'-ACU...GCAGG C C G GC U A ACCAC...CCC-3'@LB@ GGG CUC CGGC GCCGGC C CGUGACC G UUGAGU@LB@ ||| ||| |:|| :||||| | ||:|||| | ||||||@LB@ CCC GAG GUCG UGGCCG G GCGCUGG C AACUCA@LB@3'-UUU...ACGCA A A AA ACUA A U CUGUA...GUU-5'@LB@ | |@LB@ 73 31@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -44.8167 kcal/mol@LB@Unfolding Energy - mRNA 16.8729 kcal/mol@LB@Unfolding Energy - sRNA 18.8965 kcal/mol@LB@@LB@Position - mRNA 157 -- 194@LB@Position - sRNA 32 -- 72@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 57 |
0.0004766 |
0.03843 |
pa1413 |
N/A |
-13.23 |
0.031643 |
209 -- 220 |
33 -- 44 |
transcriptional regulator |
pa0708 pa4203 |
_____________208__________221\n_____________|____________|\n5'-GGU...GAGUU____________GAUUU...CGA-3'\n______________CGGCCAGUUGAG\n______________||:|||||||||\n______________GCUGGUCAACUC\n3'-UUU...AGAGC____________ACUGU...GUU-5'\n_____________|____________|\n_____________45___________32\n |
214 -- 220 |
33 -- 39 |
-19.8607 kcal/mol |
4.38796 kcal/mol |
2.24787 kcal/mol |
208 221@LB@ | |@LB@5'-GGU...GAGUU GAUUU...CGA-3'@LB@ CGGCCAGUUGAG@LB@ ||:|||||||||@LB@ GCUGGUCAACUC@LB@3'-UUU...AGAGC ACUGU...GUU-5'@LB@ | |@LB@ 45 32@LB@@LB@@LB@Energy -13.23 kcal/mol@LB@Hybridization Energy -19.8607 kcal/mol@LB@Unfolding Energy - mRNA 4.38796 kcal/mol@LB@Unfolding Energy - sRNA 2.24787 kcal/mol@LB@@LB@Position - mRNA 209 -- 220@LB@Position - sRNA 33 -- 44@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 97 |
0.001341 |
0.06355 |
pa3929 |
cioB |
-12.35 |
0.052798 |
141 -- 190 |
33 -- 89 |
cyanide insensitive terminal oxidase |
|
_____________140____________________________________________________________191\n_____________|______________________________________________________________|\n5'-UCG...UCGAC______CA____G______________C__GCA_G____C______________GACAA___GAACU...UCU-3'\n______________GAAGAG__CGAC_GC__________CA_GC___A_CGGC_GA_C_CGCGACCAG_____GAG\n______________||||||__||||_||__________||_||___|_||||_||_|_|||||||||_____|||\n______________CUUCUC__GCUG_CG__________GU_CG___U_GCCG_CU_G_GCGCUGGUC_____CUC\n3'-UUU...UUAGA______AG____A__CACCCAGAGA_____AA__G____A__A_A_________AA______ACUGU...GUU-5'\n_____________|______________________________________________________________|\n_____________90_____________________________________________________________32\n |
176 -- 182 |
38 -- 44 |
-47.0211 kcal/mol |
15.6367 kcal/mol |
19.0341 kcal/mol |
140 191@LB@ | |@LB@5'-UCG...UCGAC CA G C GCA G C GACAA GAACU...UCU-3'@LB@ GAAGAG CGAC GC CA GC A CGGC GA C CGCGACCAG GAG@LB@ |||||| |||| || || || | |||| || | ||||||||| |||@LB@ CUUCUC GCUG CG GU CG U GCCG CU G GCGCUGGUC CUC@LB@3'-UUU...UUAGA AG A CACCCAGAGA AA G A A A AA ACUGU...GUU-5'@LB@ | |@LB@ 90 32@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -47.0211 kcal/mol@LB@Unfolding Energy - mRNA 15.6367 kcal/mol@LB@Unfolding Energy - sRNA 19.0341 kcal/mol@LB@@LB@Position - mRNA 141 -- 190@LB@Position - sRNA 33 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 81 |
0.0009408 |
0.05338 |
pa2962 |
tmk |
-12.93 |
0.037833 |
94 -- 116 |
34 -- 55 |
thymidylate kinase |
|
_____________93________________________117\n_____________|_________________________|\n5'-CGC...AACAA______________GUA________AGCGU...AGG-3'\n______________GGC_GGUC_CGCGA___CCAGUUGA\n______________|||_|:||_|||||___||||||||\n______________CCG_CUAG_GCGCU___GGUCAACU\n3'-UUU...AAUGG___A____A________________CACUG...GUU-5'\n_____________|_________________________|\n_____________56________________________33\n |
110 -- 116 |
34 -- 40 |
-28.5201 kcal/mol |
7.46572 kcal/mol |
8.1291 kcal/mol |
93 117@LB@ | |@LB@5'-CGC...AACAA GUA AGCGU...AGG-3'@LB@ GGC GGUC CGCGA CCAGUUGA@LB@ ||| |:|| ||||| ||||||||@LB@ CCG CUAG GCGCU GGUCAACU@LB@3'-UUU...AAUGG A A CACUG...GUU-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -28.5201 kcal/mol@LB@Unfolding Energy - mRNA 7.46572 kcal/mol@LB@Unfolding Energy - sRNA 8.1291 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 61 |
0.0005242 |
0.0395 |
pa4564 |
N/A |
-14.31 |
0.016198 |
190 -- 242 |
35 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189______________________________________________________243\n_____________|________________________________________________________|\n5'-AGC...UCUGA______GG___A____CAAG____GCG__G_______G_________U________CCGGC...UCG-3'\n______________GGAGAG__CGA_UGCG_____CUC___GG_UUGCUGG_UGGUCU_GC_GCU_GUUG\n______________|:||||__|||_||||_____|||___:|_||:|:||_||:|||_||_:|:_||||\n______________CUUCUC__GCU_ACGC_____GAG___UC_AAUGGCC_ACUAGA_CG_UGG_CAAC\n3'-UUU...UUAGA______AG___G____ACCCA___AG___G_______G______G__C___U____UCACU...GUU-5'\n_____________|________________________________________________________|\n_____________90_______________________________________________________34\n |
219 -- 225 |
54 -- 60 |
-52.8641 kcal/mol |
19.5279 kcal/mol |
19.034 kcal/mol |
189 243@LB@ | |@LB@5'-AGC...UCUGA GG A CAAG GCG G G U CCGGC...UCG-3'@LB@ GGAGAG CGA UGCG CUC GG UUGCUGG UGGUCU GC GCU GUUG@LB@ |:|||| ||| |||| ||| :| ||:|:|| ||:||| || :|: ||||@LB@ CUUCUC GCU ACGC GAG UC AAUGGCC ACUAGA CG UGG CAAC@LB@3'-UUU...UUAGA AG G ACCCA AG G G G C U UCACU...GUU-5'@LB@ | |@LB@ 90 34@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -52.8641 kcal/mol@LB@Unfolding Energy - mRNA 19.5279 kcal/mol@LB@Unfolding Energy - sRNA 19.034 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 35 -- 89@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 180 |
0.004705 |
0.1199 |
pa3616 |
N/A |
-16.34 |
0.003989 |
120 -- 132 |
35 -- 47 |
recombination regulator RecX |
|
_____________119___________133\n_____________|_____________|\n5'-GUC...ACCAU_____________CUGGC...UGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
126 -- 132 |
35 -- 41 |
-23.7921 kcal/mol |
3.77419 kcal/mol |
3.68501 kcal/mol |
119 133@LB@ | |@LB@5'-GUC...ACCAU CUGGC...UGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -23.7921 kcal/mol@LB@Unfolding Energy - mRNA 3.77419 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 120 -- 132@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 35 -- 41@LB@ |
