| 4 |
8.02e-06 |
0.007054 |
b0425 |
panE |
-14.83 |
0.000836 |
22 -- 49 |
1 -- 32 |
2-dehydropantoate reductase NADPH-specific |
|
_____________21________________________________50\n_____________|_________________________________|\n5'-AUC...AUAUC_________________UU____________U_AUUUU...CGC-3'\n______________GAAAGAUGG__CAUCUU__CCUCU___CCCU_C\n______________|||||||:|__||||||__|||||___||||_|\n______________CUUUCUAUC__GUAGAA__GGAGA___GGGA_G\n3'-AUU...CCAGA_________UU______U______CAU____U_-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
24 -- 30 |
24 -- 30 |
-28.6113 kcal/mol |
4.98037 kcal/mol |
8.82471 kcal/mol |
21 50@LB@ | |@LB@5'-AUC...AUAUC UU U AUUUU...CGC-3'@LB@ GAAAGAUGG CAUCUU CCUCU CCCU C@LB@ |||||||:| |||||| ||||| |||| |@LB@ CUUUCUAUC GUAGAA GGAGA GGGA G@LB@3'-AUU...CCAGA UU U CAU U -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -28.6113 kcal/mol@LB@Unfolding Energy - mRNA 4.98037 kcal/mol@LB@Unfolding Energy - sRNA 8.82471 kcal/mol@LB@@LB@Position - mRNA 22 -- 49@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 6 |
1.448e-05 |
0.00754 |
b3863 |
polA |
-11.40 |
0.016745 |
236 -- 262 |
1 -- 29 |
5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
|
_____________235___________________________263\n_____________|_____________________________|\n5'-AGA...CUUGU______UU_________________GC__AUAUC...GCG-3'\n______________AGAUGG__CAUCUUAUCUU__UAUC__GC\n______________||||:|__|||||||:||:__||:|__:|\n______________UCUAUC__GUAGAAUGGAG__AUGG__UG\n3'-AUU...GACUU______UU___________AC____GA__-5'\n_____________|____________________________|\n_____________30___________________________1\n |
244 -- 250 |
15 -- 21 |
-25.0693 kcal/mol |
5.64295 kcal/mol |
8.05079 kcal/mol |
235 263@LB@ | |@LB@5'-AGA...CUUGU UU GC AUAUC...GCG-3'@LB@ AGAUGG CAUCUUAUCUU UAUC GC@LB@ ||||:| |||||||:||: ||:| :|@LB@ UCUAUC GUAGAAUGGAG AUGG UG@LB@3'-AUU...GACUU UU AC GA -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -25.0693 kcal/mol@LB@Unfolding Energy - mRNA 5.64295 kcal/mol@LB@Unfolding Energy - sRNA 8.05079 kcal/mol@LB@@LB@Position - mRNA 236 -- 262@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 9 |
1.988e-05 |
0.007771 |
b1985 |
yeeO |
-11.51 |
0.015356 |
224 -- 255 |
1 -- 39 |
putative multdrug exporter MATE family |
|
_____________223_____________________________________256\n_____________|_______________________________________|\n5'-GAU...CAAUU______GGCUUU___________________________GCCAG...GCU-3'\n______________AAGGUC_________GAAUAUCU__CCUCUG__CUUUAC\n______________||||||_________|||:||||__||||||__|::|||\n______________UUCCAG_________CUUGUAGA__GGAGAC__GGGAUG\n3'-AUU...UCAUU______ACUUUCUAU________AU______AU______-5'\n_____________|______________________________________|\n_____________40_____________________________________1\n |
237 -- 243 |
17 -- 23 |
-28.0657 kcal/mol |
5.21805 kcal/mol |
11.3576 kcal/mol |
223 256@LB@ | |@LB@5'-GAU...CAAUU GGCUUU GCCAG...GCU-3'@LB@ AAGGUC GAAUAUCU CCUCUG CUUUAC@LB@ |||||| |||:|||| |||||| |::|||@LB@ UUCCAG CUUGUAGA GGAGAC GGGAUG@LB@3'-AUU...UCAUU ACUUUCUAU AU AU -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -28.0657 kcal/mol@LB@Unfolding Energy - mRNA 5.21805 kcal/mol@LB@Unfolding Energy - sRNA 11.3576 kcal/mol@LB@@LB@Position - mRNA 224 -- 255@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 14 |
5.486e-05 |
0.01183 |
b0420 |
dxs |
-9.76 |
0.053178 |
24 -- 31 |
1 -- 8 |
1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring |
|
_____________23_______32\n_____________|________|\n5'-ACC...GUACC________ACUUC...ACG-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
25 -- 31 |
1 -- 7 |
-13.3609 kcal/mol |
1.5078 kcal/mol |
2.11603 kcal/mol |
23 32@LB@ | |@LB@5'-ACC...GUACC ACUUC...ACG-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -13.3609 kcal/mol@LB@Unfolding Energy - mRNA 1.5078 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 24 -- 31@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 17 |
5.719e-05 |
0.01183 |
b3675 |
yidG |
-12.05 |
0.010096 |
82 -- 130 |
1 -- 56 |
inner membrane protein |
|
_____________81_____________________________________________________________131\n_____________|______________________________________________________________|\n5'-CGC...UUGCG_________CAAU_A_____CGAUGC__________GG________________________ACCAA...CGU-3'\n______________CUGGUUACG____G_AAAAG______GUCUGAAAGA___________ACCU____GCCCUAC\n______________|:|:|||||____|_|||||______||||||||||___________||||____:||||||\n______________GGCUAAUGC____C_UUUUC______CAGACUUUCU___________UGGA____UGGGAUG\n3'-AUU...GUUUA_________ACUU_A_____________________AUCUUGUAGAA____GACA_______-5'\n_____________|_____________________________________________________________|\n_____________57____________________________________________________________1\n |
124 -- 130 |
1 -- 7 |
-38.348 kcal/mol |
13.6157 kcal/mol |
12.7022 kcal/mol |
81 131@LB@ | |@LB@5'-CGC...UUGCG CAAU A CGAUGC GG ACCAA...CGU-3'@LB@ CUGGUUACG G AAAAG GUCUGAAAGA ACCU GCCCUAC@LB@ |:|:||||| | ||||| |||||||||| |||| :||||||@LB@ GGCUAAUGC C UUUUC CAGACUUUCU UGGA UGGGAUG@LB@3'-AUU...GUUUA ACUU A AUCUUGUAGAA GACA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -38.348 kcal/mol@LB@Unfolding Energy - mRNA 13.6157 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 82 -- 130@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 21 |
0.0001601 |
0.02641 |
b2344 |
fadL |
-13.31 |
0.003531 |
80 -- 135 |
1 -- 58 |
long-chain fatty acid outer membrane transporter |
|
_____________79_________________________________________________________________136\n_____________|__________________________________________________________________|\n5'-UCC...AGCUG______CCUA___UCUCGCCACU________UUUCU____________________A_________ACUUC...UUU-3'\n______________GUCCGA____UAC___________GGUCUGA_____AAGAUG________UACCUC_G_ACCCUAC\n______________:|||||____|||___________|||||||_____|||||:________||||||_|_|||||||\n______________UAGGCU____AUG___________CCAGACU_____UUCUAU________AUGGAG_C_UGGGAUG\n3'-AUU...CGGUU______A______CACUUCAUUUU__________________CUUGUAGA______A_A_______-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
129 -- 135 |
1 -- 7 |
-38.7471 kcal/mol |
12.7593 kcal/mol |
12.7027 kcal/mol |
79 136@LB@ | |@LB@5'-UCC...AGCUG CCUA UCUCGCCACU UUUCU A ACUUC...UUU-3'@LB@ GUCCGA UAC GGUCUGA AAGAUG UACCUC G ACCCUAC@LB@ :||||| ||| ||||||| |||||: |||||| | |||||||@LB@ UAGGCU AUG CCAGACU UUCUAU AUGGAG C UGGGAUG@LB@3'-AUU...CGGUU A CACUUCAUUUU CUUGUAGA A A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -38.7471 kcal/mol@LB@Unfolding Energy - mRNA 12.7593 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 80 -- 135@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 22 |
0.0001652 |
0.02641 |
b3566 |
xylF |
-9.94 |
0.047349 |
202 -- 240 |
1 -- 33 |
D-xylose transporter subunit |
|
_____________201_____________________________________241\n_____________|_______________________________________|\n5'-CGA...CACCA_____AUAA________C__CUCAC______C____C__UCCUG...AUG-3'\n______________UGAAA____AGAACAUU_UA_____CCUUUG_ACCU_AC\n______________|||||____|||||||:_||_____|||:||_|||:_||\n______________ACUUU____UCUUGUAG_AU_____GGAGAC_UGGG_UG\n3'-AUU...UCCAG_____CUA_________A_____________A____A__-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
212 -- 218 |
18 -- 24 |
-22.447 kcal/mol |
3.48977 kcal/mol |
9.04529 kcal/mol |
201 241@LB@ | |@LB@5'-CGA...CACCA AUAA C CUCAC C C UCCUG...AUG-3'@LB@ UGAAA AGAACAUU UA CCUUUG ACCU AC@LB@ ||||| |||||||: || |||:|| |||: ||@LB@ ACUUU UCUUGUAG AU GGAGAC UGGG UG@LB@3'-AUU...UCCAG CUA A A A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -22.447 kcal/mol@LB@Unfolding Energy - mRNA 3.48977 kcal/mol@LB@Unfolding Energy - sRNA 9.04529 kcal/mol@LB@@LB@Position - mRNA 202 -- 240@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 29 |
0.0002348 |
0.02849 |
b4015 |
aceA |
-10.12 |
0.041760 |
186 -- 214 |
1 -- 27 |
isocitrate lyase |
|
_____________185____________________________215\n_____________|______________________________|\n5'-UUG...UAACU______________ACA__AAA____G___ACAAC...UGA-3'\n______________AUGGAGCAUCU_GC___UG___ACCC_UAC\n______________||:||:|||||_:|___||___||||_|||\n______________UAUCUUGUAGA_UG___AC___UGGG_AUG\n3'-AUU...CUUUC___________A__GAG__A__________-5'\n_____________|_____________________________|\n_____________28____________________________1\n |
190 -- 196 |
17 -- 23 |
-23.282 kcal/mol |
5.13768 kcal/mol |
8.046 kcal/mol |
185 215@LB@ | |@LB@5'-UUG...UAACU ACA AAA G ACAAC...UGA-3'@LB@ AUGGAGCAUCU GC UG ACCC UAC@LB@ ||:||:||||| :| || |||| |||@LB@ UAUCUUGUAGA UG AC UGGG AUG@LB@3'-AUU...CUUUC A GAG A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -23.282 kcal/mol@LB@Unfolding Energy - mRNA 5.13768 kcal/mol@LB@Unfolding Energy - sRNA 8.046 kcal/mol@LB@@LB@Position - mRNA 186 -- 214@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 31 |
0.0003178 |
0.03519 |
b3588 |
aldB |
-11.98 |
0.010708 |
83 -- 100 |
1 -- 16 |
aldehyde dehydrogenase B |
|
_____________82_________________101\n_____________|__________________|\n5'-GAA...UCAAC__________A___U___CCGUA...GGG-3'\n______________UAUCUCUGUA_CCC_UGC\n______________||:|||||||_|||_|:|\n______________AUGGAGACAU_GGG_AUG\n3'-AUU...GUAGA__________________-5'\n_____________|_________________|\n_____________17________________1\n |
86 -- 92 |
7 -- 13 |
-19.6311 kcal/mol |
1.07825 kcal/mol |
6.59719 kcal/mol |
82 101@LB@ | |@LB@5'-GAA...UCAAC A U CCGUA...GGG-3'@LB@ UAUCUCUGUA CCC UGC@LB@ ||:||||||| ||| |:|@LB@ AUGGAGACAU GGG AUG@LB@3'-AUU...GUAGA -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.6311 kcal/mol@LB@Unfolding Energy - mRNA 1.07825 kcal/mol@LB@Unfolding Energy - sRNA 6.59719 kcal/mol@LB@@LB@Position - mRNA 83 -- 100@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 32 |
0.0003261 |
0.03519 |
b2789 |
gudP |
-8.38 |
0.124980 |
121 -- 127 |
1 -- 7 |
putative D-glucarate transporter |
|
_____________120_____128\n_____________|_______|\n5'-UGA...AAAAC_______GUCAC...ACG-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.2076 kcal/mol |
0.809325 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UGA...AAAAC GUCAC...ACG-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -11.2076 kcal/mol@LB@Unfolding Energy - mRNA 0.809325 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
