1 |
0 |
0 |
b3209 |
elbB |
-118.30 |
0.000000 |
1 -- 83 |
1 -- 83 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
______________1__________________________________________________________________________________84\n______________|__________________________________________________________________________________|\n___________5'-___________________________________________________________________________________GCAGU...GUG-3'\n______________GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG\n3'-UUU...UAUGA___________________________________________________________________________________-5'\n_____________|__________________________________________________________________________________|\n_____________84_________________________________________________________________________________1\n |
77 -- 83 |
1 -- 7 |
-173.12 kcal/mol |
26.3528 kcal/mol |
28.4683 kcal/mol |
1 84@LB@ | |@LB@ 5'- GCAGU...GUG-3'@LB@ GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG@LB@3'-UUU...UAUGA -5'@LB@ | |@LB@ 84 1@LB@@LB@@LB@Energy -118.30 kcal/mol@LB@Hybridization Energy -173.12 kcal/mol@LB@Unfolding Energy - mRNA 26.3528 kcal/mol@LB@Unfolding Energy - sRNA 28.4683 kcal/mol@LB@@LB@Position - mRNA 1 -- 83@LB@Position - sRNA 1 -- 83@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 1 -- 7@LB@ |
20 |
0.001165 |
0.1727 |
b1763 |
topB |
-8.06 |
0.310309 |
3 -- 10 |
34 -- 41 |
DNA topoisomerase III |
|
_____________2________11\n_____________|________|\n_________5'-UC________GAAAU...GUA-3'\n______________UGAUGGGU\n______________|||||:||\n______________ACUACUCA\n3'-UUU...AUAAU________AUGUU...GUG-5'\n_____________|________|\n_____________42_______33\n |
4 -- 10 |
34 -- 40 |
-9.5271 kcal/mol |
0.324007 kcal/mol |
1.14413 kcal/mol |
2 11@LB@ | |@LB@ 5'-UC GAAAU...GUA-3'@LB@ UGAUGGGU@LB@ |||||:||@LB@ ACUACUCA@LB@3'-UUU...AUAAU AUGUU...GUG-5'@LB@ | |@LB@ 42 33@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -9.5271 kcal/mol@LB@Unfolding Energy - mRNA 0.324007 kcal/mol@LB@Unfolding Energy - sRNA 1.14413 kcal/mol@LB@@LB@Position - mRNA 3 -- 10@LB@Position - sRNA 34 -- 41@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
18 |
0.001002 |
0.1727 |
b2284 |
nuoF |
-9.91 |
0.144715 |
4 -- 28 |
1 -- 36 |
NADH:ubiquinone oxidoreductase chain F |
|
_____________3____________________________________29\n_____________|____________________________________|\n________5'-AAC______C________________________G____UCGAG...ACG-3'\n______________GGUUAU_AGGGUAU___________UCAGGC_GCGC\n______________:||||:_||||:|:___________||||||_||:|\n______________UCAAUG_UCCCGUG___________AGUCCG_CGUG\n3'-UUU...ACUAC______U_______UCGUGACAAAA______G____-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
11 -- 17 |
23 -- 29 |
-32.4986 kcal/mol |
7.53826 kcal/mol |
15.052 kcal/mol |
3 29@LB@ | |@LB@ 5'-AAC C G UCGAG...ACG-3'@LB@ GGUUAU AGGGUAU UCAGGC GCGC@LB@ :||||: ||||:|: |||||| ||:|@LB@ UCAAUG UCCCGUG AGUCCG CGUG@LB@3'-UUU...ACUAC U UCGUGACAAAA G -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -32.4986 kcal/mol@LB@Unfolding Energy - mRNA 7.53826 kcal/mol@LB@Unfolding Energy - sRNA 15.052 kcal/mol@LB@@LB@Position - mRNA 4 -- 28@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 23 -- 29@LB@ |
3 |
3.071e-06 |
0.003055 |
b2100 |
yegV |
-9.35 |
0.183884 |
5 -- 14 |
51 -- 60 |
putative kinase |
|
_____________4__________15\n_____________|__________|\n_______5'-AAUC__________CCUGU...CUU-3'\n______________GCUGCGCCGU\n______________||||||||||\n______________CGACGCGGCA\n3'-UUU...AGAAC__________UUUAA...GUG-5'\n_____________|__________|\n_____________61_________50\n |
8 -- 14 |
51 -- 57 |
-21.1769 kcal/mol |
6.95722 kcal/mol |
4.87294 kcal/mol |
4 15@LB@ | |@LB@ 5'-AAUC CCUGU...CUU-3'@LB@ GCUGCGCCGU@LB@ ||||||||||@LB@ CGACGCGGCA@LB@3'-UUU...AGAAC UUUAA...GUG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -21.1769 kcal/mol@LB@Unfolding Energy - mRNA 6.95722 kcal/mol@LB@Unfolding Energy - sRNA 4.87294 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 51 -- 57@LB@ |
184 |
0.01102 |
0.2089 |
b1033 |
ghrA |
-10.56 |
0.108938 |
6 -- 15 |
64 -- 73 |
glyoxylate/hydroxypyruvate reductase A |
|
_____________5__________16\n_____________|__________|\n______5'-UAAUU__________AUGAC...GCG-3'\n______________UAGGGAAAUC\n______________:|||||||||\n______________GUCCCUUUAG\n3'-UUU...UUGUG__________AACCG...GUG-5'\n_____________|__________|\n_____________74_________63\n |
9 -- 15 |
64 -- 70 |
-14.6499 kcal/mol |
0.954451 kcal/mol |
3.13463 kcal/mol |
5 16@LB@ | |@LB@ 5'-UAAUU AUGAC...GCG-3'@LB@ UAGGGAAAUC@LB@ :|||||||||@LB@ GUCCCUUUAG@LB@3'-UUU...UUGUG AACCG...GUG-5'@LB@ | |@LB@ 74 63@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -14.6499 kcal/mol@LB@Unfolding Energy - mRNA 0.954451 kcal/mol@LB@Unfolding Energy - sRNA 3.13463 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 64 -- 73@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 64 -- 70@LB@ |
73 |
0.003782 |
0.1804 |
b3560 |
glyQ |
-10.80 |
0.098141 |
7 -- 31 |
51 -- 74 |
glycine tRNA synthetase alpha subunit |
|
_____________6__________________________32\n_____________|__________________________|\n_____5'-ACAGUU____________A__AAA_____G__UAUAC...UGG-3'\n______________CCAGGGAAG_CU_UG___UGCGC_GU\n______________||||||||:_||_||___|||||_||\n______________GGUCCCUUU_GA_AC___ACGCG_CA\n3'-UUU...GUUGU_________A_____CG______G__UUUAA...GUG-5'\n_____________|__________________________|\n_____________75_________________________50\n |
9 -- 15 |
66 -- 72 |
-27.2651 kcal/mol |
7.67928 kcal/mol |
8.78847 kcal/mol |
6 32@LB@ | |@LB@ 5'-ACAGUU A AAA G UAUAC...UGG-3'@LB@ CCAGGGAAG CU UG UGCGC GU@LB@ ||||||||: || || ||||| ||@LB@ GGUCCCUUU GA AC ACGCG CA@LB@3'-UUU...GUUGU A CG G UUUAA...GUG-5'@LB@ | |@LB@ 75 50@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -27.2651 kcal/mol@LB@Unfolding Energy - mRNA 7.67928 kcal/mol@LB@Unfolding Energy - sRNA 8.78847 kcal/mol@LB@@LB@Position - mRNA 7 -- 31@LB@Position - sRNA 51 -- 74@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 66 -- 72@LB@ |
111 |
0.005938 |
0.1855 |
b0962 |
helD |
-11.18 |
0.082726 |
7 -- 19 |
71 -- 82 |
DNA helicase IV |
|
_____________6_____________20\n_____________|_____________|\n_____5'-CAGAGU________G____CCCAG...GCC-3'\n______________CGCCAACA_CCAG\n______________||||||||_||||\n______________GCGGUUGU_GGUC\n3'-UUU...AUGAC_____________CCUUU...GUG-5'\n_____________|_____________|\n_____________83____________70\n |
8 -- 14 |
75 -- 81 |
-19.0718 kcal/mol |
1.18849 kcal/mol |
6.70061 kcal/mol |
6 20@LB@ | |@LB@ 5'-CAGAGU G CCCAG...GCC-3'@LB@ CGCCAACA CCAG@LB@ |||||||| ||||@LB@ GCGGUUGU GGUC@LB@3'-UUU...AUGAC CCUUU...GUG-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -11.18 kcal/mol@LB@Hybridization Energy -19.0718 kcal/mol@LB@Unfolding Energy - mRNA 1.18849 kcal/mol@LB@Unfolding Energy - sRNA 6.70061 kcal/mol@LB@@LB@Position - mRNA 7 -- 19@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 75 -- 81@LB@ |
52 |
0.002619 |
0.1727 |
b2720 |
hycF |
-12.75 |
0.040951 |
8 -- 55 |
44 -- 94 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________7______________________________________________________56\n_____________|______________________________________________________|\n____5'-CGACCCU____UAC_________GG_________________CCGA_______CU______CGGUA...CAG-3'\n______________GCGC___AUGCUGCGC__CAACACC______GUUU____UGCGCCG__GAUUAU\n______________||||___||:||||||__|||||||______:|:|____|||||||__:|||||\n______________CGCG___UAUGACGCG__GUUGUGG______UAGA____ACGCGGC__UUAAUA\n3'-UUU...CCCCA____CU___________________UCCCUU____ACCG_______AU______AUACU...GUG-5'\n_____________|______________________________________________________|\n_____________95_____________________________________________________43\n |
41 -- 47 |
52 -- 58 |
-46.3174 kcal/mol |
16.2176 kcal/mol |
17.3533 kcal/mol |
7 56@LB@ | |@LB@ 5'-CGACCCU UAC GG CCGA CU CGGUA...CAG-3'@LB@ GCGC AUGCUGCGC CAACACC GUUU UGCGCCG GAUUAU@LB@ |||| ||:|||||| ||||||| :|:| ||||||| :|||||@LB@ CGCG UAUGACGCG GUUGUGG UAGA ACGCGGC UUAAUA@LB@3'-UUU...CCCCA CU UCCCUU ACCG AU AUACU...GUG-5'@LB@ | |@LB@ 95 43@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -46.3174 kcal/mol@LB@Unfolding Energy - mRNA 16.2176 kcal/mol@LB@Unfolding Energy - sRNA 17.3533 kcal/mol@LB@@LB@Position - mRNA 8 -- 55@LB@Position - sRNA 44 -- 94@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 52 -- 58@LB@ |
93 |
0.005014 |
0.1855 |
b0091 |
murC |
-15.25 |
0.013117 |
8 -- 30 |
73 -- 94 |
UDP-N-acetylmuramate:L-alanine ligase |
|
_____________7_______________________31\n_____________|_______________________|\n____5'-CAGCUUA____________U__________CUGGC...GCG-3'\n______________GCGUGGAUGCUG_CGCCAACACC\n______________|||:|:||:|||_||||||||||\n______________CGCGCUUAUGAC_GCGGUUGUGG\n3'-UUU...CCCCA_______________________UCCCU...GUG-5'\n_____________|_______________________|\n_____________95______________________72\n |
24 -- 30 |
73 -- 79 |
-39.1057 kcal/mol |
11.3 kcal/mol |
12.5321 kcal/mol |
7 31@LB@ | |@LB@ 5'-CAGCUUA U CUGGC...GCG-3'@LB@ GCGUGGAUGCUG CGCCAACACC@LB@ |||:|:||:||| ||||||||||@LB@ CGCGCUUAUGAC GCGGUUGUGG@LB@3'-UUU...CCCCA UCCCU...GUG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -15.25 kcal/mol@LB@Hybridization Energy -39.1057 kcal/mol@LB@Unfolding Energy - mRNA 11.3 kcal/mol@LB@Unfolding Energy - sRNA 12.5321 kcal/mol@LB@@LB@Position - mRNA 8 -- 30@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 73 -- 79@LB@ |
100 |
0.00547 |
0.1855 |
b2451 |
eutA |
-10.77 |
0.099200 |
8 -- 32 |
56 -- 86 |
reactivating factor for ethanolamine ammonia lyase |
|
_____________7_______________________________33\n_____________|_______________________________|\n____5'-GUCAUCA________UU______________CC_____UUUCG...UGU-3'\n______________ACUGCGCC__CGCC______GUUU__GCUGC\n______________||||||||__|:||______:|:|__|||||\n______________UGACGCGG__GUGG______UAGA__CGACG\n3'-UUU...GCUUA________UU____UCCCUU____AC_____CGGCA...GUG-5'\n_____________|_______________________________|\n_____________87______________________________55\n |
9 -- 15 |
79 -- 85 |
-30.9169 kcal/mol |
5.09004 kcal/mol |
15.0537 kcal/mol |
7 33@LB@ | |@LB@ 5'-GUCAUCA UU CC UUUCG...UGU-3'@LB@ ACUGCGCC CGCC GUUU GCUGC@LB@ |||||||| |:|| :|:| |||||@LB@ UGACGCGG GUGG UAGA CGACG@LB@3'-UUU...GCUUA UU UCCCUU AC CGGCA...GUG-5'@LB@ | |@LB@ 87 55@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -30.9169 kcal/mol@LB@Unfolding Energy - mRNA 5.09004 kcal/mol@LB@Unfolding Energy - sRNA 15.0537 kcal/mol@LB@@LB@Position - mRNA 8 -- 32@LB@Position - sRNA 56 -- 86@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 79 -- 85@LB@ |