112 |
0.004986 |
0.1545 |
b0118 |
acnB |
-15.18 |
0.018766 |
221 -- 251 |
38 -- 71 |
aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase |
|
_____________220________________________________252\n_____________|__________________________________|\n5'-GAG...CGUAA_________UGAG___GC_______G________GCGCC...UGC-3'\n______________GCACGUAGC____CGU_____CGCU_AGGGGAUU\n______________:|||::|||____|||_____|:||_||||||||\n______________UGUGUGUCG____GCA_____GUGA_UCCCCUAA\n3'-UUU...UCUGA_________UUAA___ACAAA____G________AGGUA...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________37\n |
245 -- 251 |
38 -- 44 |
-33.2374 kcal/mol |
13.3072 kcal/mol |
4.74986 kcal/mol |
220 252@LB@ | |@LB@5'-GAG...CGUAA UGAG GC G GCGCC...UGC-3'@LB@ GCACGUAGC CGU CGCU AGGGGAUU@LB@ :|||::||| ||| |:|| ||||||||@LB@ UGUGUGUCG GCA GUGA UCCCCUAA@LB@3'-UUU...UCUGA UUAA ACAAA G AGGUA...GCA-5'@LB@ | |@LB@ 72 37@LB@@LB@@LB@Energy -15.18 kcal/mol@LB@Hybridization Energy -33.2374 kcal/mol@LB@Unfolding Energy - mRNA 13.3072 kcal/mol@LB@Unfolding Energy - sRNA 4.74986 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 38 -- 71@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 38 -- 44@LB@ |
73 |
0.00298 |
0.1437 |
b0474 |
adk |
-13.48 |
0.049381 |
180 -- 198 |
34 -- 50 |
adenylate kinase |
|
_____________179_________________199\n_____________|___________________|\n5'-ACC...CGACA_____UA____________CAAUG...AUA-3'\n______________CAUUU__AGGGGAUUUUCG\n______________||:|:__|||||||||:|:\n______________GUGAG__UCCCCUAAAGGU\n3'-UUU...ACAAA___________________ACGAA...GCA-5'\n_____________|___________________|\n_____________51__________________33\n |
191 -- 197 |
35 -- 41 |
-19.9961 kcal/mol |
4.64453 kcal/mol |
1.87382 kcal/mol |
179 199@LB@ | |@LB@5'-ACC...CGACA UA CAAUG...AUA-3'@LB@ CAUUU AGGGGAUUUUCG@LB@ ||:|: |||||||||:|:@LB@ GUGAG UCCCCUAAAGGU@LB@3'-UUU...ACAAA ACGAA...GCA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9961 kcal/mol@LB@Unfolding Energy - mRNA 4.64453 kcal/mol@LB@Unfolding Energy - sRNA 1.87382 kcal/mol@LB@@LB@Position - mRNA 180 -- 198@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
18 |
0.0001516 |
0.02826 |
b2817 |
amiC |
-14.62 |
0.026197 |
167 -- 204 |
31 -- 70 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________166______________________________________205\n_____________|________________________________________|\n5'-AGU...CUUGU________UUAGAUUUC___________A__GG_______CAGGA...UCA-3'\n______________UACACAGC_________UUUUGCUCGGG_GA____CAUGU\n______________:|||||||_________|||::|||:||_||____||||:\n______________GUGUGUCG_________AAAGUGAGUCC_CU____GUACG\n3'-UUU...CUGAU________UUAAGCAAC___________C__AAAG_____AAUAU...GCA-5'\n_____________|________________________________________|\n_____________71_______________________________________30\n |
188 -- 194 |
43 -- 49 |
-32.0387 kcal/mol |
10.1821 kcal/mol |
7.23824 kcal/mol |
166 205@LB@ | |@LB@5'-AGU...CUUGU UUAGAUUUC A GG CAGGA...UCA-3'@LB@ UACACAGC UUUUGCUCGGG GA CAUGU@LB@ :||||||| |||::|||:|| || ||||:@LB@ GUGUGUCG AAAGUGAGUCC CU GUACG@LB@3'-UUU...CUGAU UUAAGCAAC C AAAG AAUAU...GCA-5'@LB@ | |@LB@ 71 30@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -32.0387 kcal/mol@LB@Unfolding Energy - mRNA 10.1821 kcal/mol@LB@Unfolding Energy - sRNA 7.23824 kcal/mol@LB@@LB@Position - mRNA 167 -- 204@LB@Position - sRNA 31 -- 70@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 43 -- 49@LB@ |
121 |
0.005439 |
0.1553 |
b1640 |
anmK |
-7.89 |
0.496680 |
290 -- 297 |
63 -- 70 |
anhydro-N-acetylmuramic acid kinase |
|
_____________289______298\n_____________|________|\n5'-CCA...CGGGU________UGG-3'\n______________CGCACAGC\n______________|:||||||\n______________GUGUGUCG\n3'-UUU...CUGAU________UUAAG...GCA-5'\n_____________|________|\n_____________71_______62\n |
291 -- 297 |
63 -- 69 |
-13.0848 kcal/mol |
2.06561 kcal/mol |
3.13161 kcal/mol |
289 298@LB@ | |@LB@5'-CCA...CGGGU UGG-3'@LB@ CGCACAGC@LB@ |:||||||@LB@ GUGUGUCG@LB@3'-UUU...CUGAU UUAAG...GCA-5'@LB@ | |@LB@ 71 62@LB@@LB@@LB@Energy -7.89 kcal/mol@LB@Hybridization Energy -13.0848 kcal/mol@LB@Unfolding Energy - mRNA 2.06561 kcal/mol@LB@Unfolding Energy - sRNA 3.13161 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 63 -- 70@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 63 -- 69@LB@ |
4 |
8.9e-06 |
0.006694 |
b3281 |
aroE |
-13.87 |
0.039990 |
230 -- 259 |
45 -- 75 |
dehydroshikimate reductase NAD(P)-binding |
|
_____________229_____________________________260\n_____________|_______________________________|\n5'-UUU...AAUCC___A__C________A___CCA_________UCAGC...AUG-3'\n______________GAU_GC_CACAGCAA_UCG____UUCAUUCA\n______________||:_:|_||||||||_|||____||||:|||\n______________CUG_UG_GUGUCGUU_AGC____AAGUGAGU\n3'-UUU...CGUUU___A__U________A___AACA________CCCCU...GCA-5'\n_____________|_______________________________|\n_____________76______________________________44\n |
253 -- 259 |
45 -- 51 |
-26.2723 kcal/mol |
8.66309 kcal/mol |
3.74078 kcal/mol |
229 260@LB@ | |@LB@5'-UUU...AAUCC A C A CCA UCAGC...AUG-3'@LB@ GAU GC CACAGCAA UCG UUCAUUCA@LB@ ||: :| |||||||| ||| ||||:|||@LB@ CUG UG GUGUCGUU AGC AAGUGAGU@LB@3'-UUU...CGUUU A U A AACA CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.2723 kcal/mol@LB@Unfolding Energy - mRNA 8.66309 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 230 -- 259@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 45 -- 51@LB@ |
57 |
0.002011 |
0.1223 |
b3057 |
bacA |
-16.67 |
0.007222 |
149 -- 193 |
41 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-UUC...UGGUC_______________GACAAG_GGUACAUUUUAAUA_________UUUAU...UUG-3'\n______________AUACGCAGUAGUUCG______C______________AUUUAGGGG\n______________|:||:|||:|:||||______|______________|:|:|||||\n______________UGUGUGUCGUUAAGC______G______________UGAGUCCCC\n3'-UUU...UCUGA_______________AACAAA________________________UAAAG...GCA-5'\n_____________|_____________________________________________|\n_____________72____________________________________________40\n |
187 -- 193 |
41 -- 47 |
-30.087 kcal/mol |
8.67993 kcal/mol |
4.74226 kcal/mol |
148 194@LB@ | |@LB@5'-UUC...UGGUC GACAAG GGUACAUUUUAAUA UUUAU...UUG-3'@LB@ AUACGCAGUAGUUCG C AUUUAGGGG@LB@ |:||:|||:|:|||| | |:|:|||||@LB@ UGUGUGUCGUUAAGC G UGAGUCCCC@LB@3'-UUU...UCUGA AACAAA UAAAG...GCA-5'@LB@ | |@LB@ 72 40@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -30.087 kcal/mol@LB@Unfolding Energy - mRNA 8.67993 kcal/mol@LB@Unfolding Energy - sRNA 4.74226 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 41 -- 71@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 41 -- 47@LB@ |
101 |
0.004534 |
0.1538 |
b2079 |
baeR |
-10.16 |
0.230535 |
155 -- 191 |
34 -- 71 |
response regulator in two-component regulatory system with BaeS |
|
_____________154_______________________________________192\n_____________|_________________________________________|\n5'-CAG...GGUAA___U________A_____AC______G_AAC______UA__GAGAG...CGA-3'\n______________GCA_UACAGUAG___GUU____CGCU_G___GGGAUU__CA\n______________:||_:||||:|:___|||____|:||_:___||||||__||\n______________UGU_GUGUCGUU___CAA____GUGA_U___CCCUAA__GU\n3'-UUU...UCUGA____________AAG___CAAA____G_C________AG__ACGAA...GCA-5'\n_____________|_________________________________________|\n_____________72________________________________________33\n |
160 -- 166 |
61 -- 67 |
-23.4603 kcal/mol |
8.51419 kcal/mol |
4.79237 kcal/mol |
154 192@LB@ | |@LB@5'-CAG...GGUAA U A AC G AAC UA GAGAG...CGA-3'@LB@ GCA UACAGUAG GUU CGCU G GGGAUU CA@LB@ :|| :||||:|: ||| |:|| : |||||| ||@LB@ UGU GUGUCGUU CAA GUGA U CCCUAA GU@LB@3'-UUU...UCUGA AAG CAAA G C AG ACGAA...GCA-5'@LB@ | |@LB@ 72 33@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -23.4603 kcal/mol@LB@Unfolding Energy - mRNA 8.51419 kcal/mol@LB@Unfolding Energy - sRNA 4.79237 kcal/mol@LB@@LB@Position - mRNA 155 -- 191@LB@Position - sRNA 34 -- 71@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 61 -- 67@LB@ |
11 |
9.086e-05 |
0.0245 |
b3337 |
bfd |
-12.11 |
0.098410 |
247 -- 280 |
34 -- 76 |
bacterioferritin-associated ferredoxin |
|
_____________246_________________________________________281\n_____________|___________________________________________|\n5'-GCG...UCGUC___________________UCCCC___________________GCAAU...UUC-3'\n______________AGGCUGUGCGC__CAGUUU______UCACUCG______UUCCA\n______________||:||:::|:|__||:||:______||||||:______|||||\n______________UCUGAUGUGUG__GUUAAG______AGUGAGU______AAGGU\n3'-UUU...CCGUU___________UC______CAACAA_______CCCCUA_____ACGAA...GCA-5'\n_____________|___________________________________________|\n_____________77__________________________________________33\n |
269 -- 275 |
45 -- 51 |
-24.9474 kcal/mol |
8.02269 kcal/mol |
4.816 kcal/mol |
246 281@LB@ | |@LB@5'-GCG...UCGUC UCCCC GCAAU...UUC-3'@LB@ AGGCUGUGCGC CAGUUU UCACUCG UUCCA@LB@ ||:||:::|:| ||:||: ||||||: |||||@LB@ UCUGAUGUGUG GUUAAG AGUGAGU AAGGU@LB@3'-UUU...CCGUU UC CAACAA CCCCUA ACGAA...GCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.9474 kcal/mol@LB@Unfolding Energy - mRNA 8.02269 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 247 -- 280@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 45 -- 51@LB@ |
86 |
0.003687 |
0.1509 |
b0774 |
bioA |
-10.95 |
0.166636 |
92 -- 152 |
44 -- 98 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________91_____________________________________________________________153\n_____________|______________________________________________________________|\n5'-ACG...ACAAU_____G______C____A__CAU______UCUCCAAA___U__UU_________A_______UGUAG...AAG-3'\n______________GUCCA_CGUGGG_GGUG_GC___GGGGCU________ACG_GU__UUUGUUGUU__AUUCGG\n______________|:|||_||||||_|:||_||___::|:||________||:_|:__||:||||||__|:||:|\n______________CGGGU_GCACCC_CUAC_CG___UUCUGA________UGU_CG__AAGCAACAA__UGAGUC\n____3'-UUUUUUU_____A______U____C__U________UGUG__________UU_________AG______CCCUA...GCA-5'\n_____________|______________________________________________________________|\n_____________99_____________________________________________________________43\n |
139 -- 145 |
52 -- 58 |
-48.0349 kcal/mol |
20.1482 kcal/mol |
16.9429 kcal/mol |
91 153@LB@ | |@LB@5'-ACG...ACAAU G C A CAU UCUCCAAA U UU A UGUAG...AAG-3'@LB@ GUCCA CGUGGG GGUG GC GGGGCU ACG GU UUUGUUGUU AUUCGG@LB@ |:||| |||||| |:|| || ::|:|| ||: |: ||:|||||| |:||:|@LB@ CGGGU GCACCC CUAC CG UUCUGA UGU CG AAGCAACAA UGAGUC@LB@ 3'-UUUUUUU A U C U UGUG UU AG CCCUA...GCA-5'@LB@ | |@LB@ 99 43@LB@@LB@@LB@Energy -10.95 kcal/mol@LB@Hybridization Energy -48.0349 kcal/mol@LB@Unfolding Energy - mRNA 20.1482 kcal/mol@LB@Unfolding Energy - sRNA 16.9429 kcal/mol@LB@@LB@Position - mRNA 92 -- 152@LB@Position - sRNA 44 -- 98@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
115 |
0.005088 |
0.155 |
b4131 |
cadA |
-16.57 |
0.007707 |
197 -- 237 |
37 -- 75 |
lysine decarboxylase acid-inducible |
|
_____________196__________________________________________238\n_____________|____________________________________________|\n5'-CUC...GAUAU______GA___UUAUU_____A_____AA____AU_________AUUUU...UUG-3'\n______________GACUAU__ACG_____GCAAU___UUG__UCAC___GGGGGUUU\n______________|||||:__||:_____|||||___|||__||||___||||:|||\n______________CUGAUG__UGU_____CGUUA___AAC__AGUG___CCCCUAAA\n3'-UUU...CGUUU______UG_____________AGC___AA____AGU________GGUAC...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________36\n |
231 -- 237 |
37 -- 43 |
-27.1465 kcal/mol |
5.79755 kcal/mol |
4.77966 kcal/mol |
196 238@LB@ | |@LB@5'-CUC...GAUAU GA UUAUU A AA AU AUUUU...UUG-3'@LB@ GACUAU ACG GCAAU UUG UCAC GGGGGUUU@LB@ |||||: ||: ||||| ||| |||| ||||:|||@LB@ CUGAUG UGU CGUUA AAC AGUG CCCCUAAA@LB@3'-UUU...CGUUU UG AGC AA AGU GGUAC...GCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.57 kcal/mol@LB@Hybridization Energy -27.1465 kcal/mol@LB@Unfolding Energy - mRNA 5.79755 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 197 -- 237@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 37 -- 43@LB@ |