129 |
0.01414 |
0.3575 |
b3579 |
yiaO |
-11.03 |
0.174508 |
249 -- 273 |
50 -- 76 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________248_________________________274\n_____________|___________________________|\n5'-ACU...CGUCC____________C__UA__________UUGUU...AAA-3'\n______________UGGUUUUAUAUU_AU__UUAGUCGUAU\n______________||:|||||:|::_||__|:||||::|:\n______________ACUAAAAUGUGG_UA__AGUCAGUGUG\n3'-UUU...CGCCC____________U__UG__________UACUA...UAG-5'\n_____________|___________________________|\n_____________77__________________________49\n |
132 -- 138 |
168 -- 174 |
-19.0823 kcal/mol |
5.4875 kcal/mol |
5.03533 kcal/mol |
248 274@LB@ | |@LB@5'-ACU...CGUCC C UA UUGUU...AAA-3'@LB@ UGGUUUUAUAUU AU UUAGUCGUAU@LB@ ||:|||||:|:: || |:||||::|:@LB@ ACUAAAAUGUGG UA AGUCAGUGUG@LB@3'-UUU...CGCCC U UG UACUA...UAG-5'@LB@ | |@LB@ 77 49@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -19.0823 kcal/mol@LB@Unfolding Energy - mRNA 5.4875 kcal/mol@LB@Unfolding Energy - sRNA 5.03533 kcal/mol@LB@@LB@Position - mRNA 249 -- 273@LB@Position - sRNA 50 -- 76@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 168 -- 174@LB@ |
132 |
0.0143 |
0.3575 |
b0147 |
ligT |
-9.89 |
0.288456 |
69 -- 117 |
16 -- 69 |
2'-5' RNA ligase |
|
_____________68__________________________________118\n_____________|___________________________________|\n5'-CCA...AAGUA______GUA_G___GCAGCAA_______C_A____ACAAA...CGG-3'\n______________AUUCAG___A_ACG_______CGGGCAA_G_CGAC\n______________|:||||___|_||:_______|:|||||_|_|:||\n______________UGAGUC___U_UGU_______GUCCGUU_C_GUUG\n3'-UUU...GGUUA______AG__G___ACUAC___________A____AAAGU...UAG-5'\n_____________|___________________________________|\n_____________70__________________________________15\n |
112 -- 118 |
155 -- 161 |
-21.4956 kcal/mol |
4.52534 kcal/mol |
8.18567 kcal/mol |
68 118@LB@ | |@LB@5'-CCA...AAGUA GUA G GCAGCAA C A ACAAA...CGG-3'@LB@ AUUCAG A ACG CGGGCAA G CGAC@LB@ |:|||| | ||: |:||||| | |:||@LB@ UGAGUC U UGU GUCCGUU C GUUG@LB@3'-UUU...GGUUA AG G ACUAC A AAAGU...UAG-5'@LB@ | |@LB@ 70 15@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -21.4956 kcal/mol@LB@Unfolding Energy - mRNA 4.52534 kcal/mol@LB@Unfolding Energy - sRNA 8.18567 kcal/mol@LB@@LB@Position - mRNA 69 -- 117@LB@Position - sRNA 16 -- 69@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 155 -- 161@LB@ |
41 |
0.003653 |
0.2912 |
b2842 |
kduD |
-13.01 |
0.069205 |
14 -- 50 |
128 -- 174 |
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase |
b4266 b2774 |
_____________13_______________________________________________51\n_____________|________________________________________________|\n5'-CCG...AACGC______U____________________GAG____________G_____CCCGA...CGG-3'\n______________GUCAUA_UGUGAUGCA_______UAAC___CAG____GCGGU_AUCUC\n______________||||:|_::|||||||_______:|||___|||____|||||_|||:|\n______________CAGUGU_GUACUACGU_______GUUG___GUC____CGCCA_UAGGG\n3'-UUU...UGAGU________________CCGUUCA____AAA___UUAA_____G_____UGACG...UAG-5'\n_____________|________________________________________________|\n_____________175______________________________________________127\n |
23 -- 29 |
160 -- 166 |
-35.8105 kcal/mol |
9.71011 kcal/mol |
15.5834 kcal/mol |
13 51@LB@ | |@LB@5'-CCG...AACGC U GAG G CCCGA...CGG-3'@LB@ GUCAUA UGUGAUGCA UAAC CAG GCGGU AUCUC@LB@ ||||:| ::||||||| :||| ||| ||||| |||:|@LB@ CAGUGU GUACUACGU GUUG GUC CGCCA UAGGG@LB@3'-UUU...UGAGU CCGUUCA AAA UUAA G UGACG...UAG-5'@LB@ | |@LB@ 175 127@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -35.8105 kcal/mol@LB@Unfolding Energy - mRNA 9.71011 kcal/mol@LB@Unfolding Energy - sRNA 15.5834 kcal/mol@LB@@LB@Position - mRNA 14 -- 50@LB@Position - sRNA 128 -- 174@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 160 -- 166@LB@ |
33 |
0.002591 |
0.2642 |
b0331 |
prpB |
-22.44 |
0.000909 |
137 -- 159 |
1 -- 22 |
2-methylisocitrate lyase |
|
_____________136__________________160\n_____________|____________________|\n5'-GUC...AUUGU_____A______________UUUAU...UGG-3'\n______________GGCAC_CCCCUUGCUUUGUC\n______________|||||_||||||||||::||\n______________CCGUG_GGGGAACGAAGUAG\n3'-UUU...GUACC____________________-5'\n_____________|___________________|\n_____________23__________________1\n |
153 -- 159 |
1 -- 7 |
-33.844 kcal/mol |
4.2272 kcal/mol |
8.43224 kcal/mol |
136 160@LB@ | |@LB@5'-GUC...AUUGU A UUUAU...UGG-3'@LB@ GGCAC CCCCUUGCUUUGUC@LB@ ||||| ||||||||||::||@LB@ CCGUG GGGGAACGAAGUAG@LB@3'-UUU...GUACC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -22.44 kcal/mol@LB@Hybridization Energy -33.844 kcal/mol@LB@Unfolding Energy - mRNA 4.2272 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
148 |
0.01584 |
0.3602 |
b1822 |
rlmA |
-10.68 |
0.203557 |
148 -- 239 |
111 -- 186 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________147___________240\n_____________|_____________|\n5'-AAG...GCGUG_____C_______UUGCG...GGU-3'\n______________AUUCG_GUUACAC\n______________|:||:_||:||||\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________187___________110\n |
163 -- 169 |
168 -- 174 |
-12.5288 kcal/mol |
1.89227 kcal/mol |
0.283892 kcal/mol |
147 240@LB@ | |@LB@5'-AAG...GCGUG C UUGCG...GGU-3'@LB@ AUUCG GUUACAC@LB@ |:||: ||:||||@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 187 110@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -12.5288 kcal/mol@LB@Unfolding Energy - mRNA 1.89227 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 148 -- 239@LB@Position - sRNA 111 -- 186@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 168 -- 174@LB@ |
44 |
0.003817 |
0.292 |
b0967 |
rlmI |
-10.41 |
0.230051 |
81 -- 118 |
128 -- 161 |
23S rRNA m(5)C1962 methyltransferase SAM-dependent |
|
_____________80_________________________________119\n_____________|__________________________________|\n5'-CGU...UGAAC____C___AAACC_______UUAU_CA_______GACAU...AAG-3'\n______________UCGC_CGU_____CAGGCAA____G__GACUUUC\n______________||:|_|:|_____|||||||____|__:||||||\n______________AGUG_GUA_____GUCCGUU____C__UUGAAAG\n3'-UUU...GAGUC____U___CUAC_____________AG_______UCUUA...UAG-5'\n_____________|__________________________________|\n_____________162________________________________127\n |
95 -- 101 |
145 -- 151 |
-21.0542 kcal/mol |
5.99356 kcal/mol |
7.97203 kcal/mol |
80 119@LB@ | |@LB@5'-CGU...UGAAC C AAACC UUAU CA GACAU...AAG-3'@LB@ UCGC CGU CAGGCAA G GACUUUC@LB@ ||:| |:| ||||||| | :||||||@LB@ AGUG GUA GUCCGUU C UUGAAAG@LB@3'-UUU...GAGUC U CUAC AG UCUUA...UAG-5'@LB@ | |@LB@ 162 127@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -21.0542 kcal/mol@LB@Unfolding Energy - mRNA 5.99356 kcal/mol@LB@Unfolding Energy - sRNA 7.97203 kcal/mol@LB@@LB@Position - mRNA 81 -- 118@LB@Position - sRNA 128 -- 161@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 145 -- 151@LB@ |
16 |
0.0008966 |
0.1886 |
b0807 |
rlmF |
-16.29 |
0.014793 |
117 -- 160 |
51 -- 97 |
23S rRNA m(6)A1618 methyltransferase SAM-dependent |
|
_____________116_____________________________________________161\n_____________|_______________________________________________|\n5'-AUU...UUAAG___U_____AA______A_______________U__A_C________UUAUG...UCC-3'\n______________GUU_UGGGG____UGAU_AACGCAGCCAG_AUA_UU_C_CUGUCGCG\n______________|||_||||:____|:|:_||||||:||||_|:|_:|_|_||||||||\n______________CAA_ACCCU____AUUG_UUGCGUUGGUC_UGU_GA_G_GACAGCGC\n3'-UUU...AUUAG___C_____GCGA____G___________G___U__A_C________CAUUU...UAG-5'\n_____________|_______________________________________________|\n_____________98______________________________________________50\n |
154 -- 160 |
51 -- 57 |
-44.7843 kcal/mol |
10.0752 kcal/mol |
25.3667 kcal/mol |
116 161@LB@ | |@LB@5'-AUU...UUAAG U AA A U A C UUAUG...UCC-3'@LB@ GUU UGGGG UGAU AACGCAGCCAG AUA UU C CUGUCGCG@LB@ ||| ||||: |:|: ||||||:|||| |:| :| | ||||||||@LB@ CAA ACCCU AUUG UUGCGUUGGUC UGU GA G GACAGCGC@LB@3'-UUU...AUUAG C GCGA G G U A C CAUUU...UAG-5'@LB@ | |@LB@ 98 50@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -44.7843 kcal/mol@LB@Unfolding Energy - mRNA 10.0752 kcal/mol@LB@Unfolding Energy - sRNA 25.3667 kcal/mol@LB@@LB@Position - mRNA 117 -- 160@LB@Position - sRNA 51 -- 97@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 51 -- 57@LB@ |
186 |
0.02152 |
0.3833 |
b3581 |
sgbH |
-10.17 |
0.255482 |
135 -- 158 |
123 -- 153 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________134________159\n_____________|__________|\n5'-UUU...UAAGG__________UAUGA...AAG-3'\n______________AG_CACACAU\n______________||_|||||||\n______________UC_GUGUGUA\n3'-UUU...AUGAG__A_______CUACG...UAG-5'\n_____________|__________|\n_____________154________122\n |
193 -- 199 |
166 -- 172 |
-9.15702 kcal/mol |
1.98532 kcal/mol |
0.591348 kcal/mol |
134 159@LB@ | |@LB@5'-UUU...UAAGG UAUGA...AAG-3'@LB@ AG CACACAU@LB@ || |||||||@LB@ UC GUGUGUA@LB@3'-UUU...AUGAG A CUACG...UAG-5'@LB@ | |@LB@ 154 122@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -9.15702 kcal/mol@LB@Unfolding Energy - mRNA 1.98532 kcal/mol@LB@Unfolding Energy - sRNA 0.591348 kcal/mol@LB@@LB@Position - mRNA 135 -- 158@LB@Position - sRNA 123 -- 153@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 166 -- 172@LB@ |
25 |
0.002009 |
0.2633 |
b0134 |
panB |
-9.88 |
0.290153 |
57 -- 67 |
176 -- 186 |
3-methyl-2-oxobutanoate hydroxymethyltransferase |
|
_____________56__________68\n_____________|___________|\n5'-CAG...AAAGC___________UCCAG...UUG-3'\n______________CACCAGUACUU\n______________|||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________187_________175\n |
61 -- 67 |
176 -- 182 |
-15.2136 kcal/mol |
0.973349 kcal/mol |
3.38772 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAGC UCCAG...UUG-3'@LB@ CACCAGUACUU@LB@ |||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 187 175@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2136 kcal/mol@LB@Unfolding Energy - mRNA 0.973349 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 176 -- 186@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 176 -- 182@LB@ |
109 |
0.01201 |
0.3575 |
b1096 |
pabC |
-8.08 |
0.578936 |
115 -- 139 |
144 -- 163 |
4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex |
|
_____________114____________140\n_____________|______________|\n5'-GUU...GUGUA_______CG_____GGUGG...ACG-3'\n______________ACUCCUU__GCUUC\n______________||:||:|__|||||\n______________UGGGGGA__CGAAG\n3'-UUU...CCCCG_______A______UAG-5'\n_____________|______________|\n_____________164____________143\n |
29 -- 35 |
10 -- 16 |
-15.037 kcal/mol |
0.971533 kcal/mol |
6.96912 kcal/mol |
114 140@LB@ | |@LB@5'-GUU...GUGUA CG GGUGG...ACG-3'@LB@ ACUCCUU GCUUC@LB@ ||:||:| |||||@LB@ UGGGGGA CGAAG@LB@3'-UUU...CCCCG A UAG-5'@LB@ | |@LB@ 164 143@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -15.037 kcal/mol@LB@Unfolding Energy - mRNA 0.971533 kcal/mol@LB@Unfolding Energy - sRNA 6.96912 kcal/mol@LB@@LB@Position - mRNA 115 -- 139@LB@Position - sRNA 144 -- 163@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 10 -- 16@LB@ |