117 |
0.003878 |
0.1165 |
b3078 |
ygjI |
-10.25 |
0.038289 |
174 -- 181 |
1 -- 8 |
putative transporter |
b0899 |
_____________173______182\n_____________|________|\n5'-GGA...ACCGC________UCAUU...UUG-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
175 -- 181 |
1 -- 7 |
-12.7576 kcal/mol |
0.416118 kcal/mol |
2.11603 kcal/mol |
173 182@LB@ | |@LB@5'-GGA...ACCGC UCAUU...UUG-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -12.7576 kcal/mol@LB@Unfolding Energy - mRNA 0.416118 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 174 -- 181@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 1 -- 7@LB@ |
2 |
0 |
0 |
b0796 |
ybiH |
-7.52 |
0.201543 |
119 -- 140 |
54 -- 76 |
DUF1956 domain-containing tetR family putative transcriptional regulator |
b1013 |
_____________118_____________________141\n_____________|_______________________|\n5'-CGG...GCGUU________UC_______UA____GACAA...CCA-3'\n______________GCUAAAAU__UUAGCCA___CUG\n______________||||||||__|:|||||___|:|\n______________CGAUUUUA__AGUCGGU___GGC\n3'-AUU...CCCGC________UA_______UUA___UAAUG...AUG-5'\n_____________|_______________________|\n_____________77______________________53\n |
129 -- 135 |
60 -- 66 |
-19.7488 kcal/mol |
5.88928 kcal/mol |
6.3634 kcal/mol |
118 141@LB@ | |@LB@5'-CGG...GCGUU UC UA GACAA...CCA-3'@LB@ GCUAAAAU UUAGCCA CUG@LB@ |||||||| |:||||| |:|@LB@ CGAUUUUA AGUCGGU GGC@LB@3'-AUU...CCCGC UA UUA UAAUG...AUG-5'@LB@ | |@LB@ 77 53@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -19.7488 kcal/mol@LB@Unfolding Energy - mRNA 5.88928 kcal/mol@LB@Unfolding Energy - sRNA 6.3634 kcal/mol@LB@@LB@Position - mRNA 119 -- 140@LB@Position - sRNA 54 -- 76@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 60 -- 66@LB@ |
26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
53 |
0.0007581 |
0.04961 |
b1302 |
puuE |
-16.93 |
0.000076 |
166 -- 207 |
20 -- 57 |
4-aminobutyrate aminotransferase PLP-dependent |
b2662 |
_____________165_________________________________________208\n_____________|___________________________________________|\n5'-AGC...UAAUU________AC_______AGUC_______G_____C________ACAAU...CGC-3'\n______________UCCGAUUA__CGUGAAG____AAAAGGU_UGAAA_AU_GAGCA\n______________||||||||__|||||||____|||||||_|||||_||_||:||\n______________AGGCUAAU__GCACUUC____UUUUCCA_ACUUU_UA_CUUGU\n3'-AUU...GGUUU_________________A__________G_____C__U_____AGAAU...AUG-5'\n_____________|___________________________________________|\n_____________58__________________________________________19\n |
176 -- 182 |
43 -- 49 |
-36.956 kcal/mol |
7.85943 kcal/mol |
12.1551 kcal/mol |
165 208@LB@ | |@LB@5'-AGC...UAAUU AC AGUC G C ACAAU...CGC-3'@LB@ UCCGAUUA CGUGAAG AAAAGGU UGAAA AU GAGCA@LB@ |||||||| ||||||| ||||||| ||||| || ||:||@LB@ AGGCUAAU GCACUUC UUUUCCA ACUUU UA CUUGU@LB@3'-AUU...GGUUU A G C U AGAAU...AUG-5'@LB@ | |@LB@ 58 19@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -36.956 kcal/mol@LB@Unfolding Energy - mRNA 7.85943 kcal/mol@LB@Unfolding Energy - sRNA 12.1551 kcal/mol@LB@@LB@Position - mRNA 166 -- 207@LB@Position - sRNA 20 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 43 -- 49@LB@ |
163 |
0.006545 |
0.1413 |
b0532 |
sfmD |
-7.71 |
0.181786 |
104 -- 132 |
48 -- 76 |
putative outer membrane export usher protein |
b3144 b4317 b0940 |
_____________103____________________________133\n_____________|______________________________|\n5'-UCA...GGAAA______________A___UUAA________GUUCA...GCU-3'\n______________GCUGAAAU_UUCAG_CCG____UGAUUAUG\n______________|||:||||_|||||_||:____:|||||:|\n______________CGAUUUUA_AAGUC_GGU____GCUAAUGC\n3'-AUU...CCCGC________U_________UUAG________ACUUC...AUG-5'\n_____________|______________________________|\n_____________77_____________________________47\n |
126 -- 132 |
48 -- 54 |
-23.9612 kcal/mol |
8.59534 kcal/mol |
7.67378 kcal/mol |
103 133@LB@ | |@LB@5'-UCA...GGAAA A UUAA GUUCA...GCU-3'@LB@ GCUGAAAU UUCAG CCG UGAUUAUG@LB@ |||:|||| ||||| ||: :|||||:|@LB@ CGAUUUUA AAGUC GGU GCUAAUGC@LB@3'-AUU...CCCGC U UUAG ACUUC...AUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -23.9612 kcal/mol@LB@Unfolding Energy - mRNA 8.59534 kcal/mol@LB@Unfolding Energy - sRNA 7.67378 kcal/mol@LB@@LB@Position - mRNA 104 -- 132@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 48 -- 54@LB@ |
158 |
0.00634 |
0.1412 |
b3598 |
yibI |
-10.19 |
0.039756 |
289 -- 298 |
49 -- 58 |
DUF3302 family inner membrane protein |
b3587 |
_____________288________299\n_____________|__________|\n5'-CGU...CCCUU__________CA-3'\n______________AUCUGAUUGC\n______________|||:||||:|\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
292 -- 298 |
49 -- 55 |
-10.9433 kcal/mol |
0.440755 kcal/mol |
0.318367 kcal/mol |
288 299@LB@ | |@LB@5'-CGU...CCCUU CA-3'@LB@ AUCUGAUUGC@LB@ |||:||||:|@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -10.9433 kcal/mol@LB@Unfolding Energy - mRNA 0.440755 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
88 |
0.002339 |
0.09349 |
b3878 |
yihQ |
-11.00 |
0.022508 |
260 -- 267 |
1 -- 8 |
putative sulpholipid alpha-glucosidase; alpha-glucosyl fluoride glucosidase |
b3656 |
_____________259______268\n_____________|________|\n5'-AAC...AGUUU________AUUUU...GCA-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
261 -- 267 |
1 -- 7 |
-13.427 kcal/mol |
0.33456 kcal/mol |
2.11603 kcal/mol |
259 268@LB@ | |@LB@5'-AAC...AGUUU AUUUU...GCA-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -13.427 kcal/mol@LB@Unfolding Energy - mRNA 0.33456 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 260 -- 267@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 1 -- 7@LB@ |
175 |
0.007291 |
0.1466 |
b1498 |
ydeN |
-8.19 |
0.139530 |
95 -- 124 |
45 -- 67 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________94_____________________________125\n_____________|______________________________|\n5'-AUU...CUUUU______________CUAUCUCU________CUAAC...UAA-3'\n______________UUUAGCUAAAUCUG________UUAUGUGA\n______________||:|||:|||||:|________|||:||||\n______________AAGUCGGUUUAGGC________AAUGCACU\n3'-AUU...UUUAU______________U_______________UCAUU...AUG-5'\n_____________|______________________________|\n_____________68_____________________________44\n |
118 -- 124 |
45 -- 51 |
-22.2428 kcal/mol |
5.90754 kcal/mol |
8.16749 kcal/mol |
94 125@LB@ | |@LB@5'-AUU...CUUUU CUAUCUCU CUAAC...UAA-3'@LB@ UUUAGCUAAAUCUG UUAUGUGA@LB@ ||:|||:|||||:| |||:||||@LB@ AAGUCGGUUUAGGC AAUGCACU@LB@3'-AUU...UUUAU U UCAUU...AUG-5'@LB@ | |@LB@ 68 44@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -22.2428 kcal/mol@LB@Unfolding Energy - mRNA 5.90754 kcal/mol@LB@Unfolding Energy - sRNA 8.16749 kcal/mol@LB@@LB@Position - mRNA 95 -- 124@LB@Position - sRNA 45 -- 67@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
191 |
0.008587 |
0.1558 |
b0823 |
ybiW |
-9.49 |
0.063221 |
47 -- 54 |
1 -- 8 |
putative pyruvate formate lyase |
b3951 |
_____________46_______55\n_____________|________|\n5'-ACC...UUUUC________CACAC...CGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
48 -- 54 |
1 -- 7 |
-12.4662 kcal/mol |
0.878635 kcal/mol |
2.11603 kcal/mol |
46 55@LB@ | |@LB@5'-ACC...UUUUC CACAC...CGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -12.4662 kcal/mol@LB@Unfolding Energy - mRNA 0.878635 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 47 -- 54@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 1 -- 7@LB@ |
79 |
0.001698 |
0.07533 |
b2890 |
lysS |
-8.16 |
0.142186 |
53 -- 64 |
54 -- 65 |
lysine tRNA synthetase constitutive |
b4129 |
_____________52___________65\n_____________|____________|\n5'-AAA...UGGGG____________UUCUU...GGA-3'\n______________CAGCCAGAUUCG\n______________||||||:||:||\n______________GUCGGUUUAGGC\n3'-AUU...UAUAA____________UAAUG...AUG-5'\n_____________|____________|\n_____________66___________53\n |
58 -- 64 |
54 -- 60 |
-18.439 kcal/mol |
4.14677 kcal/mol |
6.15795 kcal/mol |
52 65@LB@ | |@LB@5'-AAA...UGGGG UUCUU...GGA-3'@LB@ CAGCCAGAUUCG@LB@ ||||||:||:||@LB@ GUCGGUUUAGGC@LB@3'-AUU...UAUAA UAAUG...AUG-5'@LB@ | |@LB@ 66 53@LB@@LB@@LB@Energy -8.16 kcal/mol@LB@Hybridization Energy -18.439 kcal/mol@LB@Unfolding Energy - mRNA 4.14677 kcal/mol@LB@Unfolding Energy - sRNA 6.15795 kcal/mol@LB@@LB@Position - mRNA 53 -- 64@LB@Position - sRNA 54 -- 65@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 54 -- 60@LB@ |