| 189 |
0.008291 |
0.1545 |
b3882 |
yihU |
-11.60 |
0.044017 |
173 -- 244 |
4 -- 78 |
3-sulpholactaldehyde (SLA) reductase NADH-dependent; gamma-hydroxybutyrate dehydrogenase NADH-dependent |
b0509 b3125 |
_____________172________________________________________________________________________________245\n_____________|__________________________________________________________________________________|\n5'-CAC...AAAAA___ACAUAACU________________U______________C___AAUC__________G__UAG___AAA__G_______AAUGG...ACG-3'\n______________GUG________GU_AUUCAGGAGAGGG__________UAUGG_AGC____GCGUUUAUCG_UU___GAC___UG_GUUCGCC\n______________|||________||_|||||::|:|||:__________|||||_|||____:||:::||||_||___|||___||_:|||:||\n______________CAC________CA_UAAGUUUUUUCCU__________AUACC_UCG____UGCGGGUAGC_AA___CUG___AC_UAAGUGG\n3'-UUU...GUUAA___GAUACGU___U_____________UCAUUCUGUU_________CGU___________G________CA___G_______ACG-5'\n_____________|__________________________________________________________________________________|\n_____________79_________________________________________________________________________________3\n |
238 -- 244 |
4 -- 10 |
-50.248 kcal/mol |
17.9839 kcal/mol |
20.6724 kcal/mol |
172 245@LB@ | |@LB@5'-CAC...AAAAA ACAUAACU U C AAUC G UAG AAA G AAUGG...ACG-3'@LB@ GUG GU AUUCAGGAGAGGG UAUGG AGC GCGUUUAUCG UU GAC UG GUUCGCC@LB@ ||| || |||||::|:|||: ||||| ||| :||:::|||| || ||| || :|||:||@LB@ CAC CA UAAGUUUUUUCCU AUACC UCG UGCGGGUAGC AA CUG AC UAAGUGG@LB@3'-UUU...GUUAA GAUACGU U UCAUUCUGUU CGU G CA G ACG-5'@LB@ | |@LB@ 79 3@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -50.248 kcal/mol@LB@Unfolding Energy - mRNA 17.9839 kcal/mol@LB@Unfolding Energy - sRNA 20.6724 kcal/mol@LB@@LB@Position - mRNA 173 -- 244@LB@Position - sRNA 4 -- 78@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 181 |
0.007702 |
0.1499 |
b3145 |
yraK |
-8.82 |
0.202558 |
266 -- 280 |
35 -- 49 |
putative fimbrial-like adhesin protein |
b0533 b0941 |
_____________265_____________281\n_____________|_______________|\n5'-CGA...UCCUC____G__________CGACA...CGA-3'\n______________AGGA_GGUGUGGAGC\n______________|:||_::|:||||||\n______________UUCU_UUAUACCUCG\n3'-UUU...CUUCA____G__________CGUUG...ACG-5'\n_____________|_______________|\n_____________50______________34\n |
274 -- 280 |
35 -- 41 |
-19.5909 kcal/mol |
7.00879 kcal/mol |
3.74396 kcal/mol |
265 281@LB@ | |@LB@5'-CGA...UCCUC G CGACA...CGA-3'@LB@ AGGA GGUGUGGAGC@LB@ |:|| ::|:||||||@LB@ UUCU UUAUACCUCG@LB@3'-UUU...CUUCA G CGUUG...ACG-5'@LB@ | |@LB@ 50 34@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -19.5909 kcal/mol@LB@Unfolding Energy - mRNA 7.00879 kcal/mol@LB@Unfolding Energy - sRNA 3.74396 kcal/mol@LB@@LB@Position - mRNA 266 -- 280@LB@Position - sRNA 35 -- 49@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 10 |
1.762e-05 |
0.005627 |
b1112 |
bhsA |
-13.86 |
0.010205 |
165 -- 186 |
1 -- 22 |
biofilm cell surface and signaling protein |
b0806 b0802 |
_____________164_____________________187\n_____________|_______________________|\n5'-UAA...UAAUU________AC_U___________AUAAG...AAC-3'\n______________GCUUG_CG__G_CAUUCAUCUGC\n______________|||||_||__|_||||||:||||\n______________CGAAC_GC__C_GUAAGUGGACG\n3'-UUU...GGUAG_____U__AA_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
180 -- 186 |
1 -- 7 |
-25.8922 kcal/mol |
3.94114 kcal/mol |
8.09964 kcal/mol |
164 187@LB@ | |@LB@5'-UAA...UAAUU AC U AUAAG...AAC-3'@LB@ GCUUG CG G CAUUCAUCUGC@LB@ ||||| || | ||||||:||||@LB@ CGAAC GC C GUAAGUGGACG@LB@3'-UUU...GGUAG U AA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.86 kcal/mol@LB@Hybridization Energy -25.8922 kcal/mol@LB@Unfolding Energy - mRNA 3.94114 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 165 -- 186@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 50 |
0.0005726 |
0.04013 |
b2215 |
ompC |
-10.22 |
0.097386 |
138 -- 180 |
44 -- 87 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________137___________________________________________181\n_____________|_____________________________________________|\n5'-AUC...AAUGA________CAG____________CA________CAAAUA______UAUAA...AUC-3'\n______________GGGUUAAU_____UAUGCAGUGG__UAAAAAAG______AAGGCA\n______________|::|:|||_____||||||||::__:|||||||______|||:||\n______________CUUAGUUA_____AUACGUCAUU__GUUUUUUC______UUCUGU\n3'-UUU...GCAUG________ACACG__________AA________CUUCA_______UAUAC...ACG-5'\n_____________|_____________________________________________|\n_____________88____________________________________________43\n |
162 -- 168 |
55 -- 61 |
-25.937 kcal/mol |
10.0096 kcal/mol |
5.70573 kcal/mol |
137 181@LB@ | |@LB@5'-AUC...AAUGA CAG CA CAAAUA UAUAA...AUC-3'@LB@ GGGUUAAU UAUGCAGUGG UAAAAAAG AAGGCA@LB@ |::|:||| ||||||||:: :||||||| |||:||@LB@ CUUAGUUA AUACGUCAUU GUUUUUUC UUCUGU@LB@3'-UUU...GCAUG ACACG AA CUUCA UAUAC...ACG-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -25.937 kcal/mol@LB@Unfolding Energy - mRNA 10.0096 kcal/mol@LB@Unfolding Energy - sRNA 5.70573 kcal/mol@LB@@LB@Position - mRNA 138 -- 180@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 126 |
0.004539 |
0.1258 |
b0546 |
ybcM |
-11.00 |
0.062763 |
188 -- 220 |
45 -- 91 |
DLP12 prophage; putative DNA-binding transcriptional regulator |
b1499 b0564 b3515 b4116 b0566 b3516 |
_____________187_____________________________________________221\n_____________|_______________________________________________|\n5'-GCU...AUAAA___G__UGA__GUA_________A_______________________UAACU...GUC-3'\n______________GUA_GG___GA___UGCUG_GCA______________GAGGUAAGAC\n______________|||_|:___:|___||||:_|||______________||:|||||||\n______________CAU_CU___UU___ACGAU_CGU______________CUUCAUUCUG\n3'-UUU...CGCAG___G__UAG__AAC_____A___CAUUAAGUUUUUUC__________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
214 -- 220 |
45 -- 51 |
-23.4531 kcal/mol |
6.72952 kcal/mol |
5.72765 kcal/mol |
187 221@LB@ | |@LB@5'-GCU...AUAAA G UGA GUA A UAACU...GUC-3'@LB@ GUA GG GA UGCUG GCA GAGGUAAGAC@LB@ ||| |: :| ||||: ||| ||:|||||||@LB@ CAU CU UU ACGAU CGU CUUCAUUCUG@LB@3'-UUU...CGCAG G UAG AAC A CAUUAAGUUUUUUC UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -23.4531 kcal/mol@LB@Unfolding Energy - mRNA 6.72952 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 156 |
0.006066 |
0.137 |
b0005 |
yaaX |
-9.16 |
0.170742 |
96 -- 118 |
53 -- 73 |
DUF2502 family putative periplasmic protein |
b2390 |
_____________95______________________119\n_____________|_______________________|\n5'-UCU...AAUAA_________C_______UU____UUGCG...AAU-3'\n______________AUGCGGUAA_UUAGAGA__AGGA\n______________||||:||||_|:|:|:|__||||\n______________UACGUCAUU_AGUUUUU__UCCU\n3'-UUU...CACGA_________A_____________UCAUU...ACG-5'\n_____________|_______________________|\n_____________74______________________52\n |
98 -- 104 |
65 -- 71 |
-18.9701 kcal/mol |
6.27714 kcal/mol |
3.52907 kcal/mol |
95 119@LB@ | |@LB@5'-UCU...AAUAA C UU UUGCG...AAU-3'@LB@ AUGCGGUAA UUAGAGA AGGA@LB@ ||||:|||| |:|:|:| ||||@LB@ UACGUCAUU AGUUUUU UCCU@LB@3'-UUU...CACGA A UCAUU...ACG-5'@LB@ | |@LB@ 74 52@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -18.9701 kcal/mol@LB@Unfolding Energy - mRNA 6.27714 kcal/mol@LB@Unfolding Energy - sRNA 3.52907 kcal/mol@LB@@LB@Position - mRNA 96 -- 118@LB@Position - sRNA 53 -- 73@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 62 |
0.001027 |
0.05816 |
b0717 |
ybgP |
-6.75 |
0.488398 |
48 -- 57 |
53 -- 62 |
putative periplasmic pilin chaperone |
b3047 |
_____________47_________58\n_____________|__________|\n5'-GCG...GUUGG__________CAUGC...CCA-3'\n______________CGAGGAAGGA\n______________|:|::|||||\n______________GUUUUUUCCU\n3'-UUU...AUUAA__________UCAUU...ACG-5'\n_____________|__________|\n_____________63_________52\n |
51 -- 57 |
53 -- 59 |
-10.1576 kcal/mol |
0.982686 kcal/mol |
2.4254 kcal/mol |
47 58@LB@ | |@LB@5'-GCG...GUUGG CAUGC...CCA-3'@LB@ CGAGGAAGGA@LB@ |:|::|||||@LB@ GUUUUUUCCU@LB@3'-UUU...AUUAA UCAUU...ACG-5'@LB@ | |@LB@ 63 52@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -10.1576 kcal/mol@LB@Unfolding Energy - mRNA 0.982686 kcal/mol@LB@Unfolding Energy - sRNA 2.4254 kcal/mol@LB@@LB@Position - mRNA 48 -- 57@LB@Position - sRNA 53 -- 62@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 88 |
0.002437 |
0.09689 |
b0940 |
elfC |
-8.14 |
0.278491 |
92 -- 131 |
23 -- 58 |
putative outer membrane fimbrial subunit export usher protein |
b3144 b0532 b4317 |
_____________91_________________________________________132\n_____________|__________________________________________|\n5'-AUU...CUGCC________CCAAA_____GC___________AUCGAA_____AAUGA...CAC-3'\n______________AAAGGGGG______AAUA___AGCGUAACGU______CCAUC\n______________|||||::|______||||___||||:||||:______|||||\n______________UUUCCUUC______UUAU___UCGCGUUGCG______GGUAG\n3'-UUU...AGUUU________AUUCUG____ACC_____________________CGAAC...ACG-5'\n_____________|__________________________________________|\n_____________59_________________________________________22\n |
112 -- 118 |
30 -- 36 |
-29.3003 kcal/mol |
7.72593 kcal/mol |
13.4354 kcal/mol |
91 132@LB@ | |@LB@5'-AUU...CUGCC CCAAA GC AUCGAA AAUGA...CAC-3'@LB@ AAAGGGGG AAUA AGCGUAACGU CCAUC@LB@ |||||::| |||| ||||:||||: |||||@LB@ UUUCCUUC UUAU UCGCGUUGCG GGUAG@LB@3'-UUU...AGUUU AUUCUG ACC CGAAC...ACG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -29.3003 kcal/mol@LB@Unfolding Energy - mRNA 7.72593 kcal/mol@LB@Unfolding Energy - sRNA 13.4354 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 30 -- 36@LB@ |
