140 |
0.005114 |
0.1284 |
b3993 |
thiE |
-7.64 |
0.188958 |
243 -- 250 |
4 -- 11 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________242______251\n_____________|________|\n5'-CAC...CAGGA________GGUGG...UAC-3'\n______________CUGUACCC\n______________||||||||\n______________GACAUGGG\n3'-AUU...AUGGA________AUG-5'\n_____________|________|\n_____________12_______3\n |
244 -- 250 |
4 -- 10 |
-13.9053 kcal/mol |
2.83489 kcal/mol |
3.45361 kcal/mol |
242 251@LB@ | |@LB@5'-CAC...CAGGA GGUGG...UAC-3'@LB@ CUGUACCC@LB@ ||||||||@LB@ GACAUGGG@LB@3'-AUU...AUGGA AUG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -13.9053 kcal/mol@LB@Unfolding Energy - mRNA 2.83489 kcal/mol@LB@Unfolding Energy - sRNA 3.45361 kcal/mol@LB@@LB@Position - mRNA 243 -- 250@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 4 -- 10@LB@ |
120 |
0.003999 |
0.1172 |
b2582 |
trxC |
-9.28 |
0.072721 |
206 -- 219 |
4 -- 16 |
thioredoxin 2 |
|
_____________205____________220\n_____________|______________|\n5'-CUC...AUGAA____G_________AUUGU...UUG-3'\n______________UACC_UUUGUACCC\n______________||||_|:|||||||\n______________AUGG_AGACAUGGG\n3'-AUU...GUAGA______________AUG-5'\n_____________|______________|\n_____________17_____________3\n |
213 -- 219 |
4 -- 10 |
-18.1109 kcal/mol |
2.27225 kcal/mol |
6.59015 kcal/mol |
205 220@LB@ | |@LB@5'-CUC...AUGAA G AUUGU...UUG-3'@LB@ UACC UUUGUACCC@LB@ |||| |:|||||||@LB@ AUGG AGACAUGGG@LB@3'-AUU...GUAGA AUG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -9.28 kcal/mol@LB@Hybridization Energy -18.1109 kcal/mol@LB@Unfolding Energy - mRNA 2.27225 kcal/mol@LB@Unfolding Energy - sRNA 6.59015 kcal/mol@LB@@LB@Position - mRNA 206 -- 219@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 4 -- 10@LB@ |
23 |
0.0001777 |
0.02687 |
b0774 |
bioA |
-12.72 |
0.005870 |
209 -- 228 |
5 -- 24 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________208___________________229\n_____________|_____________________|\n5'-ACG...ACAAC____G________________AACGC...AAG-3'\n______________GGAC_AUCUUGCCUUUG_ACC\n______________|:||_|||||:|||:||_|||\n______________CUUG_UAGAAUGGAGAC_UGG\n3'-AUU...UCUAU_________________A___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
219 -- 225 |
9 -- 15 |
-24.4474 kcal/mol |
3.74608 kcal/mol |
8.01095 kcal/mol |
208 229@LB@ | |@LB@5'-ACG...ACAAC G AACGC...AAG-3'@LB@ GGAC AUCUUGCCUUUG ACC@LB@ |:|| |||||:|||:|| |||@LB@ CUUG UAGAAUGGAGAC UGG@LB@3'-AUU...UCUAU A GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -24.4474 kcal/mol@LB@Unfolding Energy - mRNA 3.74608 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 9 -- 15@LB@ |
45 |
0.0004826 |
0.03773 |
b4133 |
cadC |
-9.27 |
0.072737 |
38 -- 110 |
5 -- 66 |
cadBA operon transcriptional activator |
|
_____________37______________________________________________________________________________111\n_____________|_______________________________________________________________________________|\n5'-GAU...GGUUC_____A______U_______AAUACUAUGUAAUCAA_____UUAU_______UAAAAAU__________A_________AAUAA...UAA-3'\n______________UCAGU_AAAUCC__UU_CGU________________GAAGU____GG_CUGG_______AACGUCUUGC_UUC___ACC\n______________||||:_||||||__||_|||________________|||||____||_|||:_______|||:||||:|_:||___|||\n______________AGUCG_UUUAGG__AA_GCA________________CUUCA____CC_GACU_______UUGUAGAAUG_GAG___UGG\n3'-AUU...UUAUA_____G______CU__U________________________UUUU__A____UUCUAUC______________ACA___GAUG-5'\n_____________|_______________________________________________________________________________|\n_____________67______________________________________________________________________________4\n |
97 -- 103 |
14 -- 20 |
-38.0459 kcal/mol |
10.2122 kcal/mol |
18.5819 kcal/mol |
37 111@LB@ | |@LB@5'-GAU...GGUUC A U AAUACUAUGUAAUCAA UUAU UAAAAAU A AAUAA...UAA-3'@LB@ UCAGU AAAUCC UU CGU GAAGU GG CUGG AACGUCUUGC UUC ACC@LB@ ||||: |||||| || ||| ||||| || |||: |||:||||:| :|| |||@LB@ AGUCG UUUAGG AA GCA CUUCA CC GACU UUGUAGAAUG GAG UGG@LB@3'-AUU...UUAUA G CU U UUUU A UUCUAUC ACA GAUG-5'@LB@ | |@LB@ 67 4@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -38.0459 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 18.5819 kcal/mol@LB@@LB@Position - mRNA 38 -- 110@LB@Position - sRNA 5 -- 66@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 14 -- 20@LB@ |
199 |
0.008811 |
0.1558 |
b4515 |
cydX |
-11.13 |
0.020449 |
151 -- 184 |
5 -- 31 |
cytochrome d (bd-I) ubiquinol oxidase subunit X |
|
_____________150________________________________185\n_____________|__________________________________|\n5'-ACC...CCAAA_______UU______AAC___CACUC________AAGUA...GUC-3'\n______________GAAGAUA__GAACGU___ACC_____UCUGUACU\n______________:||||||__||||:|___|||_____|||||||:\n______________UUUCUAU__CUUGUA___UGG_____AGACAUGG\n3'-AUU...CAGAC_______________GAA________________GAUG-5'\n_____________|__________________________________|\n_____________32_________________________________4\n |
178 -- 184 |
5 -- 11 |
-22.8813 kcal/mol |
3.72257 kcal/mol |
8.05162 kcal/mol |
150 185@LB@ | |@LB@5'-ACC...CCAAA UU AAC CACUC AAGUA...GUC-3'@LB@ GAAGAUA GAACGU ACC UCUGUACU@LB@ :|||||| ||||:| ||| |||||||:@LB@ UUUCUAU CUUGUA UGG AGACAUGG@LB@3'-AUU...CAGAC GAA GAUG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -22.8813 kcal/mol@LB@Unfolding Energy - mRNA 3.72257 kcal/mol@LB@Unfolding Energy - sRNA 8.05162 kcal/mol@LB@@LB@Position - mRNA 151 -- 184@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 5 -- 11@LB@ |
164 |
0.006623 |
0.1421 |
b2278 |
nuoL |
-8.77 |
0.099276 |
203 -- 221 |
5 -- 24 |
NADH:ubiquinone oxidoreductase membrane subunit L |
|
_____________202___________________222\n_____________|_____________________|\n5'-GGU...CGGAU______G________A_____AUUAU...UCG-3'\n______________GAACAU_CUUGCCUU___ACC\n______________||||||_|||:|||:___|||\n______________CUUGUA_GAAUGGAG___UGG\n3'-AUU...UCUAU_______________ACA___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
211 -- 217 |
11 -- 17 |
-20.7037 kcal/mol |
3.94864 kcal/mol |
8.01095 kcal/mol |
202 222@LB@ | |@LB@5'-GGU...CGGAU G A AUUAU...UCG-3'@LB@ GAACAU CUUGCCUU ACC@LB@ |||||| |||:|||: |||@LB@ CUUGUA GAAUGGAG UGG@LB@3'-AUU...UCUAU ACA GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.77 kcal/mol@LB@Hybridization Energy -20.7037 kcal/mol@LB@Unfolding Energy - mRNA 3.94864 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
150 |
0.00611 |
0.1406 |
b0735 |
ybgE |
-10.35 |
0.035619 |
38 -- 71 |
5 -- 31 |
putative inner membrane protein in cydABX-ybgE operon |
|
_____________37_________________________________72\n_____________|__________________________________|\n5'-CUG...CCAAA_______UU______AAC___CACUC________AAGUA...UUU-3'\n______________GAAGAUA__GAACGU___ACC_____UCUGUACU\n______________:||||||__||||:|___|||_____|||||||:\n______________UUUCUAU__CUUGUA___UGG_____AGACAUGG\n3'-AUU...CAGAC_______________GAA________________GAUG-5'\n_____________|__________________________________|\n_____________32_________________________________4\n |
65 -- 71 |
5 -- 11 |
-23.0678 kcal/mol |
4.68737 kcal/mol |
8.05162 kcal/mol |
37 72@LB@ | |@LB@5'-CUG...CCAAA UU AAC CACUC AAGUA...UUU-3'@LB@ GAAGAUA GAACGU ACC UCUGUACU@LB@ :|||||| ||||:| ||| |||||||:@LB@ UUUCUAU CUUGUA UGG AGACAUGG@LB@3'-AUU...CAGAC GAA GAUG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -23.0678 kcal/mol@LB@Unfolding Energy - mRNA 4.68737 kcal/mol@LB@Unfolding Energy - sRNA 8.05162 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 5 -- 11@LB@ |
176 |
0.007357 |
0.147 |
b2905 |
gcvT |
-7.40 |
0.214118 |
198 -- 224 |
6 -- 30 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________197__________________________225\n_____________|____________________________|\n5'-CUG...AGGAC_______CAC____GACU__________GAACA...AAA-3'\n______________AAGAUGG___AACA_____CCUUUGUAC\n______________|||||:|___||||_____|||:|||||\n______________UUCUAUC___UUGU_____GGAGACAUG\n3'-AUU...AGACU______________AGAAU_________GGAUG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
218 -- 224 |
6 -- 12 |
-21.3805 kcal/mol |
5.97871 kcal/mol |
8.02863 kcal/mol |
197 225@LB@ | |@LB@5'-CUG...AGGAC CAC GACU GAACA...AAA-3'@LB@ AAGAUGG AACA CCUUUGUAC@LB@ |||||:| |||| |||:|||||@LB@ UUCUAUC UUGU GGAGACAUG@LB@3'-AUU...AGACU AGAAU GGAUG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.3805 kcal/mol@LB@Unfolding Energy - mRNA 5.97871 kcal/mol@LB@Unfolding Energy - sRNA 8.02863 kcal/mol@LB@@LB@Position - mRNA 198 -- 224@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 6 -- 12@LB@ |
1 |
0 |
0 |
b0757 |
galK |
-15.06 |
0.000658 |
183 -- 231 |
8 -- 60 |
galactokinase |
|
_____________182_____________________________________________________232\n_____________|_______________________________________________________|\n5'-CAU...UUCGC_______GA______U___AAAU_____________AAA____CA__________UUGCC...GUG-3'\n______________GAAUCCG_____GUG_AAG____GAG_UCUGAAAGA___AACA____AUCUCUGU\n______________:||||||_____|||_|||____:||_|||||||||___||||____|:||||||\n______________UUUAGGC_____CAC_UUC____UUC_AGACUUUCU___UUGU____UGGAGACA\n3'-AUU...GUCGG_______UAAUG_______AUU____C_________AUC____AGAA________UGGGAUG-5'\n_____________|_______________________________________________________|\n_____________61______________________________________________________7\n |
225 -- 231 |
8 -- 14 |
-35.0906 kcal/mol |
7.3474 kcal/mol |
12.6967 kcal/mol |
182 232@LB@ | |@LB@5'-CAU...UUCGC GA U AAAU AAA CA UUGCC...GUG-3'@LB@ GAAUCCG GUG AAG GAG UCUGAAAGA AACA AUCUCUGU@LB@ :|||||| ||| ||| :|| ||||||||| |||| |:||||||@LB@ UUUAGGC CAC UUC UUC AGACUUUCU UUGU UGGAGACA@LB@3'-AUU...GUCGG UAAUG AUU C AUC AGAA UGGGAUG-5'@LB@ | |@LB@ 61 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -35.0906 kcal/mol@LB@Unfolding Energy - mRNA 7.3474 kcal/mol@LB@Unfolding Energy - sRNA 12.6967 kcal/mol@LB@@LB@Position - mRNA 183 -- 231@LB@Position - sRNA 8 -- 60@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
72 |
0.001216 |
0.05856 |
b3699 |
gyrB |
-10.53 |
0.031588 |
1 -- 17 |
9 -- 25 |
DNA gyrase subunit B |
|
______________1________________18\n______________|________________|\n___________5'-___UG____________AGCUU...GCA-3'\n______________AGA__AUUUUGCCUCUG\n______________|||__||:||:||||||\n______________UCU__UAGAAUGGAGAC\n3'-AUU...UUCUA___UG____________AUGGGAUG-5'\n_____________|_________________|\n_____________26________________8\n |
11 -- 17 |
9 -- 15 |
-19.3204 kcal/mol |
1.07855 kcal/mol |
7.71376 kcal/mol |
1 18@LB@ | |@LB@ 5'- UG AGCUU...GCA-3'@LB@ AGA AUUUUGCCUCUG@LB@ ||| ||:||:||||||@LB@ UCU UAGAAUGGAGAC@LB@3'-AUU...UUCUA UG AUGGGAUG-5'@LB@ | |@LB@ 26 8@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -19.3204 kcal/mol@LB@Unfolding Energy - mRNA 1.07855 kcal/mol@LB@Unfolding Energy - sRNA 7.71376 kcal/mol@LB@@LB@Position - mRNA 1 -- 17@LB@Position - sRNA 9 -- 25@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 9 -- 15@LB@ |