| 48 |
0.001117 |
0.07744 |
b2829 |
ptsP |
-13.12 |
0.035810 |
22 -- 37 |
14 -- 33 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
_____________21___________________38\n_____________|____________________|\n5'-CCA...GUUUG____________________AAGUU...UGG-3'\n______________ACGGCUGGCG____AUGGGU\n______________||:|||:||:____||||||\n______________UGUCGAUCGU____UACCCA\n3'-UUU...GACCA__________AAAA______AUACA...UCG-5'\n_____________|____________________|\n_____________34___________________13\n |
25 -- 31 |
24 -- 30 |
-23.1334 kcal/mol |
8.56068 kcal/mol |
1.44884 kcal/mol |
21 38@LB@ | |@LB@5'-CCA...GUUUG AAGUU...UGG-3'@LB@ ACGGCUGGCG AUGGGU@LB@ ||:|||:||: ||||||@LB@ UGUCGAUCGU UACCCA@LB@3'-UUU...GACCA AAAA AUACA...UCG-5'@LB@ | |@LB@ 34 13@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -23.1334 kcal/mol@LB@Unfolding Energy - mRNA 8.56068 kcal/mol@LB@Unfolding Energy - sRNA 1.44884 kcal/mol@LB@@LB@Position - mRNA 22 -- 37@LB@Position - sRNA 14 -- 33@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 65 |
0.001744 |
0.09016 |
b3541 |
dppD |
-12.71 |
0.044996 |
114 -- 148 |
14 -- 40 |
dipeptide/heme ABC transporter ATPas |
|
_____________113_________________________________149\n_____________|___________________________________|\n5'-UUU...GGCGA_____CUG___GU__________AACCUG______GACGG...GCG-3'\n______________UCCUG___ACG__GCUGGCAUUU______AUGGGU\n______________|||||___||:__|||:||||||______||||||\n______________AGGAC___UGU__CGAUCGUAAA______UACCCA\n3'-UUU...CACCA_____CA________________A___________AUACA...UCG-5'\n_____________|___________________________________|\n_____________41__________________________________13\n |
130 -- 136 |
21 -- 27 |
-26.5011 kcal/mol |
9.21659 kcal/mol |
4.57003 kcal/mol |
113 149@LB@ | |@LB@5'-UUU...GGCGA CUG GU AACCUG GACGG...GCG-3'@LB@ UCCUG ACG GCUGGCAUUU AUGGGU@LB@ ||||| ||: |||:|||||| ||||||@LB@ AGGAC UGU CGAUCGUAAA UACCCA@LB@3'-UUU...CACCA CA A AUACA...UCG-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -26.5011 kcal/mol@LB@Unfolding Energy - mRNA 9.21659 kcal/mol@LB@Unfolding Energy - sRNA 4.57003 kcal/mol@LB@@LB@Position - mRNA 114 -- 148@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 161 |
0.008114 |
0.1694 |
b3656 |
yicI |
-11.96 |
0.067144 |
124 -- 143 |
14 -- 37 |
putative alpha-glucosidase |
b3878 |
_____________123______________________144\n_____________|________________________|\n5'-ACA...CGUUA___A_________UCA________AAACG...UGG-3'\n______________UGG_ACAGCUGGC_______GGGU\n______________|||_||||||:||_______||||\n______________ACC_UGUCGAUCG_______CCCA\n3'-UUU...CAAGG___A_________UAAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
130 -- 136 |
25 -- 31 |
-23.0355 kcal/mol |
8.41802 kcal/mol |
2.65978 kcal/mol |
123 144@LB@ | |@LB@5'-ACA...CGUUA A UCA AAACG...UGG-3'@LB@ UGG ACAGCUGGC GGGU@LB@ ||| ||||||:|| ||||@LB@ ACC UGUCGAUCG CCCA@LB@3'-UUU...CAAGG A UAAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -23.0355 kcal/mol@LB@Unfolding Energy - mRNA 8.41802 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 124 -- 143@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 17 |
0.0001135 |
0.02244 |
b3531 |
bcsZ |
-11.80 |
0.072553 |
125 -- 136 |
14 -- 30 |
endo-1 4-D-glucanase |
|
_____________124_______________137\n_____________|_________________|\n5'-UCA...AUAUU_________________ACUGU...AGG-3'\n______________GCUGGCA_____UGGGU\n______________|||:|||_____|||||\n______________CGAUCGU_____ACCCA\n3'-UUU...CAUGU_______AAAAU_____AUACA...UCG-5'\n_____________|_________________|\n_____________31________________13\n |
125 -- 131 |
24 -- 30 |
-17.2227 kcal/mol |
4.01076 kcal/mol |
1.40705 kcal/mol |
124 137@LB@ | |@LB@5'-UCA...AUAUU ACUGU...AGG-3'@LB@ GCUGGCA UGGGU@LB@ |||:||| |||||@LB@ CGAUCGU ACCCA@LB@3'-UUU...CAUGU AAAAU AUACA...UCG-5'@LB@ | |@LB@ 31 13@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.2227 kcal/mol@LB@Unfolding Energy - mRNA 4.01076 kcal/mol@LB@Unfolding Energy - sRNA 1.40705 kcal/mol@LB@@LB@Position - mRNA 125 -- 136@LB@Position - sRNA 14 -- 30@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 163 |
0.008426 |
0.1737 |
b2780 |
pyrG |
-11.06 |
0.104451 |
98 -- 140 |
14 -- 51 |
CTP synthetase |
|
_____________97_____________________________________________141\n_____________|______________________________________________|\n5'-UGU...GCGAA_______GAUAAUGAAA____G___C____G______GUUC_____AUACU...GCC-3'\n______________GAGGAGG__________GUUU_UGG_ACAG_U__CAU_____GGGU\n______________:||||||__________|||:_|||_||||_|__|||_____||||\n______________UUCCUCC__________CAAG_ACC_UGUC_A__GUA_____CCCA\n3'-UUU...UCCGA_______AC____________G___A____G_UC___AAAUA____AUACA...UCG-5'\n_____________|______________________________________________|\n_____________52_____________________________________________13\n |
98 -- 104 |
45 -- 51 |
-28.7226 kcal/mol |
13.0099 kcal/mol |
4.65749 kcal/mol |
97 141@LB@ | |@LB@5'-UGU...GCGAA GAUAAUGAAA G C G GUUC AUACU...GCC-3'@LB@ GAGGAGG GUUU UGG ACAG U CAU GGGU@LB@ :|||||| |||: ||| |||| | ||| ||||@LB@ UUCCUCC CAAG ACC UGUC A GUA CCCA@LB@3'-UUU...UCCGA AC G A G UC AAAUA AUACA...UCG-5'@LB@ | |@LB@ 52 13@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.7226 kcal/mol@LB@Unfolding Energy - mRNA 13.0099 kcal/mol@LB@Unfolding Energy - sRNA 4.65749 kcal/mol@LB@@LB@Position - mRNA 98 -- 140@LB@Position - sRNA 14 -- 51@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 56 |
0.001349 |
0.08097 |
b0287 |
yagU |
-10.29 |
0.147287 |
182 -- 196 |
14 -- 37 |
DUF1440 family inner membrane acid resistance protein |
|
_____________181______________________197\n_____________|________________________|\n5'-AAC...CAUAA________________________AGAUA...GGG-3'\n______________UGGUACA___AGCA______GGGU\n______________|||||||___||||______||||\n______________ACCAUGU___UCGU______CCCA\n3'-UUU...CAAGG_______CGA____AAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
182 -- 188 |
31 -- 37 |
-16.1787 kcal/mol |
3.22484 kcal/mol |
2.65978 kcal/mol |
181 197@LB@ | |@LB@5'-AAC...CAUAA AGAUA...GGG-3'@LB@ UGGUACA AGCA GGGU@LB@ ||||||| |||| ||||@LB@ ACCAUGU UCGU CCCA@LB@3'-UUU...CAAGG CGA AAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -16.1787 kcal/mol@LB@Unfolding Energy - mRNA 3.22484 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 182 -- 196@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 9 |
2.519e-05 |
0.009407 |
b0435 |
bolA |
-15.32 |
0.008970 |
138 -- 163 |
15 -- 36 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________137________________________164\n_____________|__________________________|\n5'-UGA...GAAAC___AAAA_____________AAA___AUGGA...CCG-3'\n______________GGU____GCGGCUAGUAUUU___GGG\n______________|||____:|:|||||:||||___|||\n______________CCA____UGUCGAUCGUAAA___CCC\n3'-UUU...AAGGA____________________AUA___AAUAC...UCG-5'\n_____________|__________________________|\n_____________37_________________________14\n |
151 -- 157 |
21 -- 27 |
-22.9811 kcal/mol |
6.21269 kcal/mol |
1.45166 kcal/mol |
137 164@LB@ | |@LB@5'-UGA...GAAAC AAAA AAA AUGGA...CCG-3'@LB@ GGU GCGGCUAGUAUUU GGG@LB@ ||| :|:|||||:|||| |||@LB@ CCA UGUCGAUCGUAAA CCC@LB@3'-UUU...AAGGA AUA AAUAC...UCG-5'@LB@ | |@LB@ 37 14@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -22.9811 kcal/mol@LB@Unfolding Energy - mRNA 6.21269 kcal/mol@LB@Unfolding Energy - sRNA 1.45166 kcal/mol@LB@@LB@Position - mRNA 138 -- 163@LB@Position - sRNA 15 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 32 |
0.0005297 |
0.05563 |
b3456 |
livM |
-14.95 |
0.011565 |
245 -- 274 |
15 -- 42 |
branched-chain amino acid ABC transporter permease |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GCC...GCGAU______U____U___G_____C________CGUGC...CCA-3'\n______________GUUCUU_GUGC_GGC_GGCGU_UUUAUGGG\n______________||||:|_||:|_:||_:||:|_||||||||\n______________CAAGGA_CAUG_UCG_UCGUA_AAAUACCC\n3'-UUU...UCCAC______C________A______________AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
268 -- 274 |
15 -- 21 |
-29.6256 kcal/mol |
10.1077 kcal/mol |
4.57031 kcal/mol |
244 275@LB@ | |@LB@5'-GCC...GCGAU U U G C CGUGC...CCA-3'@LB@ GUUCUU GUGC GGC GGCGU UUUAUGGG@LB@ ||||:| ||:| :|| :||:| ||||||||@LB@ CAAGGA CAUG UCG UCGUA AAAUACCC@LB@3'-UUU...UCCAC C A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -14.95 kcal/mol@LB@Hybridization Energy -29.6256 kcal/mol@LB@Unfolding Energy - mRNA 10.1077 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 15 -- 21@LB@ |
