| 154 |
0.009082 |
0.2059 |
b2676 |
nrdF |
-13.94 |
0.023769 |
159 -- 176 |
53 -- 69 |
ribonucleoside-diphosphate reductase 2 beta subunit ferritin-like protein |
|
_____________158________________177\n_____________|__________________|\n5'-AAG...GCACU______GAA_________UCCUG...CAG-3'\n______________GAAAUU___GGCUGCGUC\n______________|||||:___|||||||:|\n______________CUUUAG___CCGACGCGG\n3'-UUU...GGUCC______AA__________CAUUU...GUG-5'\n_____________|__________________|\n_____________70_________________52\n |
170 -- 176 |
53 -- 59 |
-23.1658 kcal/mol |
2.38862 kcal/mol |
6.83371 kcal/mol |
158 177@LB@ | |@LB@5'-AAG...GCACU GAA UCCUG...CAG-3'@LB@ GAAAUU GGCUGCGUC@LB@ |||||: |||||||:|@LB@ CUUUAG CCGACGCGG@LB@3'-UUU...GGUCC AA CAUUU...GUG-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -13.94 kcal/mol@LB@Hybridization Energy -23.1658 kcal/mol@LB@Unfolding Energy - mRNA 2.38862 kcal/mol@LB@Unfolding Energy - sRNA 6.83371 kcal/mol@LB@@LB@Position - mRNA 159 -- 176@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 74 |
0.003792 |
0.1804 |
b2520 |
yfhM |
-12.28 |
0.050623 |
263 -- 298 |
53 -- 91 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________262_____________________________________299\n_____________|_______________________________________|\n5'-CUC...AACAA___UA____________G___U____AAAGA________UU-3'\n______________CGA__AC_GCGCCAACA_CGG_GAAA_______UGCGCC\n______________|||__||_|||||||||_|:|_||||_______||||||\n______________GCU__UG_CGCGGUUGU_GUC_CUUU_______ACGCGG\n3'-UUU...CACGC___UA__A_________G___C____AGAACCG______CAUUU...GUG-5'\n_____________|_______________________________________|\n_____________92______________________________________52\n |
272 -- 278 |
75 -- 81 |
-39.9109 kcal/mol |
10.9563 kcal/mol |
16.677 kcal/mol |
262 299@LB@ | |@LB@5'-CUC...AACAA UA G U AAAGA UU-3'@LB@ CGA AC GCGCCAACA CGG GAAA UGCGCC@LB@ ||| || ||||||||| |:| |||| ||||||@LB@ GCU UG CGCGGUUGU GUC CUUU ACGCGG@LB@3'-UUU...CACGC UA A G C AGAACCG CAUUU...GUG-5'@LB@ | |@LB@ 92 52@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -39.9109 kcal/mol@LB@Unfolding Energy - mRNA 10.9563 kcal/mol@LB@Unfolding Energy - sRNA 16.677 kcal/mol@LB@@LB@Position - mRNA 263 -- 298@LB@Position - sRNA 53 -- 91@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 5 |
5.466e-05 |
0.03849 |
b0713 |
ybgL |
-10.83 |
0.096857 |
234 -- 242 |
53 -- 61 |
UPF0271 family protein |
|
_____________233_______243\n_____________|_________|\n5'-GCC...GCGAA_________AGCGA...AUG-3'\n______________GGCUGCGCC\n______________|||||||||\n______________CCGACGCGG\n3'-UUU...UAGAA_________CAUUU...GUG-5'\n_____________|_________|\n_____________62________52\n |
236 -- 242 |
53 -- 59 |
-22.2033 kcal/mol |
6.50503 kcal/mol |
4.87107 kcal/mol |
233 243@LB@ | |@LB@5'-GCC...GCGAA AGCGA...AUG-3'@LB@ GGCUGCGCC@LB@ |||||||||@LB@ CCGACGCGG@LB@3'-UUU...UAGAA CAUUU...GUG-5'@LB@ | |@LB@ 62 52@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 6.50503 kcal/mol@LB@Unfolding Energy - sRNA 4.87107 kcal/mol@LB@@LB@Position - mRNA 234 -- 242@LB@Position - sRNA 53 -- 61@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 41 |
0.002142 |
0.1727 |
b2153 |
folE |
-10.82 |
0.097170 |
217 -- 276 |
53 -- 121 |
GTP cyclohydrolase I |
|
_____________216________________________________________________________________________277\n_____________|__________________________________________________________________________|\n5'-CUG...CAGUA______C__________CAU__AG__UUA_U________G____GA____________________________CGCCC...ACG-3'\n______________AAGAAG_GGCCCUGGUU___GA__CG___G_UGCGCGAG_ACUG____AACACC____________GCUGCGCC\n______________||:||:_|:|||:||:|___||__||___|_|||||||:_||||____||||||____________||||||||\n______________UUUUUU_CUGGGGCCGA___CU__GC___C_ACGCGCUU_UGAC____UUGUGG____________CGACGCGG\n___________3'-______A__________U____G___C___C________A____GCGG______UCCCUUUAGAAC________CAUUU...GUG-5'\n______________|_________________________________________________________________________|\n______________121_______________________________________________________________________52\n |
270 -- 276 |
53 -- 59 |
-62.0592 kcal/mol |
19.5041 kcal/mol |
31.7353 kcal/mol |
216 277@LB@ | |@LB@5'-CUG...CAGUA C CAU AG UUA U G GA CGCCC...ACG-3'@LB@ AAGAAG GGCCCUGGUU GA CG G UGCGCGAG ACUG AACACC GCUGCGCC@LB@ ||:||: |:|||:||:| || || | |||||||: |||| |||||| ||||||||@LB@ UUUUUU CUGGGGCCGA CU GC C ACGCGCUU UGAC UUGUGG CGACGCGG@LB@ 3'- A U G C C A GCGG UCCCUUUAGAAC CAUUU...GUG-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -62.0592 kcal/mol@LB@Unfolding Energy - mRNA 19.5041 kcal/mol@LB@Unfolding Energy - sRNA 31.7353 kcal/mol@LB@@LB@Position - mRNA 217 -- 276@LB@Position - sRNA 53 -- 121@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 72 |
0.00375 |
0.1804 |
b0386 |
proC |
-10.69 |
0.102749 |
216 -- 233 |
53 -- 70 |
pyrroline-5-carboxylate reductase NAD(P)-binding |
|
_____________215________________234\n_____________|__________________|\n5'-CAU...AAAUC__UUUUA_________G_AAUAU...GGG-3'\n______________GG_____UUGGCUGCG_C\n______________||_____|||||||||_|\n______________CC_____AACCGACGC_G\n3'-UUU...UGGUC__UUUAG_________G_CAUUU...GUG-5'\n_____________|__________________|\n_____________71_________________52\n |
225 -- 231 |
55 -- 61 |
-21.889 kcal/mol |
4.36146 kcal/mol |
6.83419 kcal/mol |
215 234@LB@ | |@LB@5'-CAU...AAAUC UUUUA G AAUAU...GGG-3'@LB@ GG UUGGCUGCG C@LB@ || ||||||||| |@LB@ CC AACCGACGC G@LB@3'-UUU...UGGUC UUUAG G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -21.889 kcal/mol@LB@Unfolding Energy - mRNA 4.36146 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 216 -- 233@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 171 |
0.01011 |
0.2071 |
b4086 |
alsC |
-10.38 |
0.118114 |
189 -- 207 |
53 -- 70 |
D-allose ABC transporter permease |
|
_____________188_________________208\n_____________|___________________|\n5'-CGC...GAAGA_______A____A__G___UUACC...CGA-3'\n______________GGAGAUU_UGGC_UG_GCU\n______________|||:||:_||||_||_||:\n______________CCUUUAG_ACCG_AC_CGG\n3'-UUU...UGGUC_______A_______G___CAUUU...GUG-5'\n_____________|___________________|\n_____________71__________________52\n |
189 -- 195 |
64 -- 70 |
-21.9341 kcal/mol |
4.72392 kcal/mol |
6.83419 kcal/mol |
188 208@LB@ | |@LB@5'-CGC...GAAGA A A G UUACC...CGA-3'@LB@ GGAGAUU UGGC UG GCU@LB@ |||:||: |||| || ||:@LB@ CCUUUAG ACCG AC CGG@LB@3'-UUU...UGGUC A G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -21.9341 kcal/mol@LB@Unfolding Energy - mRNA 4.72392 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 71 |
0.003482 |
0.1727 |
b4046 |
zur |
-8.96 |
0.216158 |
254 -- 300 |
53 -- 94 |
transcriptional repressor Zn(II)-binding |
|
_____________253__________________________________________________300\n_____________|____________________________________________________|\n5'-UAA...UGCGC__A___U___________UGACCCCAC______U___________________-3'\n______________GC_GCG_AAUG_UGCGCC_________AGCGCC__GGAAGU____GUUGCGCC\n______________||_|||_|||:_||||||_________|:|:||__||||:|____|:||||||\n______________CG_CGC_UUAU_ACGCGG_________UUGUGG__CCUUUA____CGACGCGG\n3'-UUU...CCCCA___________G_____________________UC______GAAC________CAUUU...GUG-5'\n_____________|_____________________________________________________|\n_____________95____________________________________________________52\n |
294 -- 300 |
53 -- 59 |
-43.5981 kcal/mol |
17.5702 kcal/mol |
17.0684 kcal/mol |
253 300@LB@ | |@LB@5'-UAA...UGCGC A U UGACCCCAC U -3'@LB@ GC GCG AAUG UGCGCC AGCGCC GGAAGU GUUGCGCC@LB@ || ||| |||: |||||| |:|:|| ||||:| |:||||||@LB@ CG CGC UUAU ACGCGG UUGUGG CCUUUA CGACGCGG@LB@3'-UUU...CCCCA G UC GAAC CAUUU...GUG-5'@LB@ | |@LB@ 95 52@LB@@LB@@LB@Energy -8.96 kcal/mol@LB@Hybridization Energy -43.5981 kcal/mol@LB@Unfolding Energy - mRNA 17.5702 kcal/mol@LB@Unfolding Energy - sRNA 17.0684 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 53 -- 94@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 70 |
0.003478 |
0.1727 |
b1919 |
dcyD |
-7.16 |
0.432573 |
249 -- 279 |
53 -- 83 |
D-cysteine desulfhydrase PLP-dependent |
|
_____________248_______________________________280\n_____________|_________________________________|\n5'-CUG...UCGGC____________CUC___U________C_____UUUCU...GGG-3'\n______________GCGCCAACGCCG___GAA_AUCU__GC_GCGCU\n______________||||||||:||:___|||_||||__||_||||:\n______________CGCGGUUGUGGU___CUU_UAGA__CG_CGCGG\n3'-UUU...UAUGA____________CC_________AC__A_____CAUUU...GUG-5'\n_____________|_________________________________|\n_____________84________________________________52\n |
252 -- 258 |
74 -- 80 |
-36.5845 kcal/mol |
12.956 kcal/mol |
16.4685 kcal/mol |
248 280@LB@ | |@LB@5'-CUG...UCGGC CUC U C UUUCU...GGG-3'@LB@ GCGCCAACGCCG GAA AUCU GC GCGCU@LB@ ||||||||:||: ||| |||| || ||||:@LB@ CGCGGUUGUGGU CUU UAGA CG CGCGG@LB@3'-UUU...UAUGA CC AC A CAUUU...GUG-5'@LB@ | |@LB@ 84 52@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -36.5845 kcal/mol@LB@Unfolding Energy - mRNA 12.956 kcal/mol@LB@Unfolding Energy - sRNA 16.4685 kcal/mol@LB@@LB@Position - mRNA 249 -- 279@LB@Position - sRNA 53 -- 83@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 132 |
0.007501 |
0.1993 |
b1947 |
fliO |
-6.89 |
0.474041 |
212 -- 250 |
53 -- 93 |
flagellar biosynthesis protein |
|
_____________211_____________________________________________251\n_____________|_______________________________________________|\n5'-AUG...AACCA______________AAUCUUCC_______UU________________ACUGC...UCG-3'\n______________CGC___UACUGUGC________GCGCCGG_____UCU__GCUGCGCC\n______________|||___|||||:||________:|:||:|_____|||__||||||||\n______________GCG___AUGACGCG________UGUGGUC_____AGA__CGACGCGG\n3'-UUU...CCCAC___CUU________GU_____________CCUUU___AC________CAUUU...GUG-5'\n_____________|_______________________________________________|\n_____________94______________________________________________52\n |
244 -- 250 |
53 -- 59 |
-40.0502 kcal/mol |
16.0889 kcal/mol |
17.0683 kcal/mol |
211 251@LB@ | |@LB@5'-AUG...AACCA AAUCUUCC UU ACUGC...UCG-3'@LB@ CGC UACUGUGC GCGCCGG UCU GCUGCGCC@LB@ ||| |||||:|| :|:||:| ||| ||||||||@LB@ GCG AUGACGCG UGUGGUC AGA CGACGCGG@LB@3'-UUU...CCCAC CUU GU CCUUU AC CAUUU...GUG-5'@LB@ | |@LB@ 94 52@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -40.0502 kcal/mol@LB@Unfolding Energy - mRNA 16.0889 kcal/mol@LB@Unfolding Energy - sRNA 17.0683 kcal/mol@LB@@LB@Position - mRNA 212 -- 250@LB@Position - sRNA 53 -- 93@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 7 |
0.0001601 |
0.08054 |
b1864 |
yebC |
-15.40 |
0.012230 |
213 -- 249 |
54 -- 89 |
UPF0082 family protein |
|
_____________212_____________________________________250\n_____________|_______________________________________|\n5'-CGU...GUCAU____AA__G___________AC_____GUAAA_______AGGAU...UAA-3'\n______________AGUA__UG_GCCAACACCAG____AUC_____GCUGCGC\n______________|:||__||_|||||||||||____|||_____|||||||\n______________UUAU__AC_CGGUUGUGGUC____UAG_____CGACGCG\n3'-UUU...CGCGC____G___G___________CCUU___AAC_________GCAUU...GUG-5'\n_____________|_______________________________________|\n_____________90______________________________________53\n |
243 -- 249 |
54 -- 60 |
-38.8431 kcal/mol |
7.10336 kcal/mol |
16.3388 kcal/mol |
212 250@LB@ | |@LB@5'-CGU...GUCAU AA G AC GUAAA AGGAU...UAA-3'@LB@ AGUA UG GCCAACACCAG AUC GCUGCGC@LB@ |:|| || ||||||||||| ||| |||||||@LB@ UUAU AC CGGUUGUGGUC UAG CGACGCG@LB@3'-UUU...CGCGC G G CCUU AAC GCAUU...GUG-5'@LB@ | |@LB@ 90 53@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -38.8431 kcal/mol@LB@Unfolding Energy - mRNA 7.10336 kcal/mol@LB@Unfolding Energy - sRNA 16.3388 kcal/mol@LB@@LB@Position - mRNA 213 -- 249@LB@Position - sRNA 54 -- 89@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
