| 77 |
0.00159 |
0.07263 |
b2159 |
nfo |
-11.23 |
0.018951 |
134 -- 154 |
4 -- 22 |
endonuclease IV with intrinsic 3'-5' exonuclease activity |
|
_____________133___________________155\n_____________|_____________________|\n5'-GAC...CCACU__________C____UA____GCUAU...CCA-3'\n______________ACAUCUUGCU_CUGU__ACCC\n______________|||||||:|:_||||__||||\n______________UGUAGAAUGG_GACA__UGGG\n3'-AUU...UAUCU__________A__________AUG-5'\n_____________|_____________________|\n_____________23____________________3\n |
134 -- 140 |
16 -- 22 |
-23.2044 kcal/mol |
4.007 kcal/mol |
7.98841 kcal/mol |
133 155@LB@ | |@LB@5'-GAC...CCACU C UA GCUAU...CCA-3'@LB@ ACAUCUUGCU CUGU ACCC@LB@ |||||||:|: |||| ||||@LB@ UGUAGAAUGG GACA UGGG@LB@3'-AUU...UAUCU A AUG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -23.2044 kcal/mol@LB@Unfolding Energy - mRNA 4.007 kcal/mol@LB@Unfolding Energy - sRNA 7.98841 kcal/mol@LB@@LB@Position - mRNA 134 -- 154@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 93 |
0.002634 |
0.09947 |
b2202 |
napC |
-9.04 |
0.084220 |
177 -- 197 |
34 -- 54 |
quinol dehydrogenase electron source for NapAB |
|
_____________176___________________198\n_____________|_____________________|\n5'-ACG...CAAAA_______G___A_________AUUAU...GUU-3'\n______________GGUUACG_GAA_UAAGAGGUU\n______________|:|||||_|||_|||:||||:\n______________CUAAUGC_CUU_AUUUUCCAG\n3'-AUU...UUAGG_______A___C_________ACUUU...AUG-5'\n_____________|_____________________|\n_____________55____________________33\n |
177 -- 183 |
48 -- 54 |
-21.2793 kcal/mol |
4.43682 kcal/mol |
7.71857 kcal/mol |
176 198@LB@ | |@LB@5'-ACG...CAAAA G A AUUAU...GUU-3'@LB@ GGUUACG GAA UAAGAGGUU@LB@ |:||||| ||| |||:||||:@LB@ CUAAUGC CUU AUUUUCCAG@LB@3'-AUU...UUAGG A C ACUUU...AUG-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.2793 kcal/mol@LB@Unfolding Energy - mRNA 4.43682 kcal/mol@LB@Unfolding Energy - sRNA 7.71857 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 105 |
0.003348 |
0.1101 |
b2218 |
rcsC |
-11.03 |
0.021992 |
174 -- 214 |
1 -- 37 |
hybrid sensory kinase in two-component regulatory system with RcsB and YojN |
|
_____________173_______________________________________215\n_____________|_________________________________________|\n5'-AGC...CCAUC____ACCU____C_____U__GCC______AAA________UUCUU...CCG-3'\n______________GGUC____GAGG_GGAGC_UC___CCUUUG___UACCUUGC\n______________||||____:||:_:||:|_||___|||:||___||||:|:|\n______________CCAG____UUCU_UCUUG_AG___GGAGAC___AUGGGAUG\n3'-AUU...AUUUU____ACU_____A_____U__AAU_________________-5'\n_____________|________________________________________|\n_____________38_______________________________________1\n |
208 -- 214 |
1 -- 7 |
-33.3544 kcal/mol |
10.9963 kcal/mol |
11.3499 kcal/mol |
173 215@LB@ | |@LB@5'-AGC...CCAUC ACCU C U GCC AAA UUCUU...CCG-3'@LB@ GGUC GAGG GGAGC UC CCUUUG UACCUUGC@LB@ |||| :||: :||:| || |||:|| ||||:|:|@LB@ CCAG UUCU UCUUG AG GGAGAC AUGGGAUG@LB@3'-AUU...AUUUU ACU A U AAU -5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -33.3544 kcal/mol@LB@Unfolding Energy - mRNA 10.9963 kcal/mol@LB@Unfolding Energy - sRNA 11.3499 kcal/mol@LB@@LB@Position - mRNA 174 -- 214@LB@Position - sRNA 1 -- 37@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 164 |
0.006623 |
0.1421 |
b2278 |
nuoL |
-8.77 |
0.099276 |
203 -- 221 |
5 -- 24 |
NADH:ubiquinone oxidoreductase membrane subunit L |
|
_____________202___________________222\n_____________|_____________________|\n5'-GGU...CGGAU______G________A_____AUUAU...UCG-3'\n______________GAACAU_CUUGCCUU___ACC\n______________||||||_|||:|||:___|||\n______________CUUGUA_GAAUGGAG___UGG\n3'-AUU...UCUAU_______________ACA___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
211 -- 217 |
11 -- 17 |
-20.7037 kcal/mol |
3.94864 kcal/mol |
8.01095 kcal/mol |
202 222@LB@ | |@LB@5'-GGU...CGGAU G A AUUAU...UCG-3'@LB@ GAACAU CUUGCCUU ACC@LB@ |||||| |||:|||: |||@LB@ CUUGUA GAAUGGAG UGG@LB@3'-AUU...UCUAU ACA GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.77 kcal/mol@LB@Hybridization Energy -20.7037 kcal/mol@LB@Unfolding Energy - mRNA 3.94864 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 109 |
0.003426 |
0.1101 |
b2280 |
nuoJ |
-6.41 |
0.346318 |
31 -- 43 |
48 -- 59 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________30____________44\n_____________|_____________|\n5'-GAU...GCCAG_________U___AGAAA...UUA-3'\n______________GAUCUGGUU_ACG\n______________:|||:|:||_|||\n______________UUAGGCUAA_UGC\n3'-AUU...UCGGU_____________ACUUC...AUG-5'\n_____________|_____________|\n_____________60____________47\n |
33 -- 39 |
51 -- 57 |
-11.2654 kcal/mol |
3.27917 kcal/mol |
1.55995 kcal/mol |
30 44@LB@ | |@LB@5'-GAU...GCCAG U AGAAA...UUA-3'@LB@ GAUCUGGUU ACG@LB@ :|||:|:|| |||@LB@ UUAGGCUAA UGC@LB@3'-AUU...UCGGU ACUUC...AUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -11.2654 kcal/mol@LB@Unfolding Energy - mRNA 3.27917 kcal/mol@LB@Unfolding Energy - sRNA 1.55995 kcal/mol@LB@@LB@Position - mRNA 31 -- 43@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 177 |
0.007672 |
0.1511 |
b2307 |
hisM |
-10.48 |
0.032509 |
175 -- 237 |
1 -- 57 |
histidine ABC transporter permease |
|
_____________174__________________________________________________________________238\n_____________|____________________________________________________________________|\n5'-CUC...GCUAC____UGGG___________________CCUGU___C___________AUGAAUA___GAA___G____UGUGG...CGG-3'\n______________UCCG____UGUGAAG___AGGG_CUGA_____GAU_GAA_AUCUUAC_______CUG___ACC_CUGC\n______________||||____:||||||___|:||_||||_____|||_|||_|||||||_______|||___|||_||:|\n______________AGGC____GCACUUC___UUCC_GACU_____CUA_CUU_UAGAAUG_______GAC___UGG_GAUG\n3'-AUU...GGUUU____UAAU_______AUU____A____UU______U___G_______GA________A__________-5'\n_____________|___________________________________________________________________|\n_____________58__________________________________________________________________1\n |
210 -- 216 |
14 -- 20 |
-38.5224 kcal/mol |
15.358 kcal/mol |
12.7026 kcal/mol |
174 238@LB@ | |@LB@5'-CUC...GCUAC UGGG CCUGU C AUGAAUA GAA G UGUGG...CGG-3'@LB@ UCCG UGUGAAG AGGG CUGA GAU GAA AUCUUAC CUG ACC CUGC@LB@ |||| :|||||| |:|| |||| ||| ||| ||||||| ||| ||| ||:|@LB@ AGGC GCACUUC UUCC GACU CUA CUU UAGAAUG GAC UGG GAUG@LB@3'-AUU...GGUUU UAAU AUU A UU U G GA A -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -38.5224 kcal/mol@LB@Unfolding Energy - mRNA 15.358 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 175 -- 237@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 67 |
0.001147 |
0.05856 |
b2319 |
usg |
-10.96 |
0.023185 |
203 -- 221 |
18 -- 36 |
putative semialdehyde dehydrogenase |
|
_____________202_________________222\n_____________|___________________|\n5'-GAG...ACCAU_________C_________GCCGU...AAA-3'\n______________GUCUGAAGG_UGGAACAUU\n______________|||||||:|_|:||||||:\n______________CAGACUUUC_AUCUUGUAG\n3'-AUU...UUUUC_________U_________AAUGG...AUG-5'\n_____________|___________________|\n_____________37__________________17\n |
215 -- 221 |
18 -- 24 |
-22.956 kcal/mol |
5.32254 kcal/mol |
6.60045 kcal/mol |
202 222@LB@ | |@LB@5'-GAG...ACCAU C GCCGU...AAA-3'@LB@ GUCUGAAGG UGGAACAUU@LB@ |||||||:| |:||||||:@LB@ CAGACUUUC AUCUUGUAG@LB@3'-AUU...UUUUC U AAUGG...AUG-5'@LB@ | |@LB@ 37 17@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.956 kcal/mol@LB@Unfolding Energy - mRNA 5.32254 kcal/mol@LB@Unfolding Energy - sRNA 6.60045 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 18 -- 36@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 197 |
0.00873 |
0.1558 |
b2324 |
mnmC |
-9.11 |
0.080832 |
111 -- 120 |
52 -- 61 |
fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme |
|
_____________110________121\n_____________|__________|\n5'-GCU...CCGAA__________CAGCC...ACG-3'\n______________CAAGUCCGAU\n______________|||:||||||\n______________GUUUAGGCUA\n3'-AUU...AGUCG__________AUGCA...AUG-5'\n_____________|__________|\n_____________62_________51\n |
114 -- 120 |
52 -- 58 |
-12.6788 kcal/mol |
1.38997 kcal/mol |
2.20422 kcal/mol |
110 121@LB@ | |@LB@5'-GCU...CCGAA CAGCC...ACG-3'@LB@ CAAGUCCGAU@LB@ |||:||||||@LB@ GUUUAGGCUA@LB@3'-AUU...AGUCG AUGCA...AUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -12.6788 kcal/mol@LB@Unfolding Energy - mRNA 1.38997 kcal/mol@LB@Unfolding Energy - sRNA 2.20422 kcal/mol@LB@@LB@Position - mRNA 111 -- 120@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 114 |
0.003723 |
0.1147 |
b2327 |
yfcA |
-8.38 |
0.125082 |
22 -- 29 |
1 -- 8 |
TauE/TSUP family inner membrane protein |
|
_____________21_______30\n_____________|________|\n5'-CAU...UACGU________CGAUA...GUG-3'\n______________UGCCCUGC\n______________|:||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
23 -- 29 |
1 -- 7 |
-12.241 kcal/mol |
1.76759 kcal/mol |
2.11603 kcal/mol |
21 30@LB@ | |@LB@5'-CAU...UACGU CGAUA...GUG-3'@LB@ UGCCCUGC@LB@ |:||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -12.241 kcal/mol@LB@Unfolding Energy - mRNA 1.76759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 21 |
0.0001601 |
0.02641 |
b2344 |
fadL |
-13.31 |
0.003531 |
80 -- 135 |
1 -- 58 |
long-chain fatty acid outer membrane transporter |
|
_____________79_________________________________________________________________136\n_____________|__________________________________________________________________|\n5'-UCC...AGCUG______CCUA___UCUCGCCACU________UUUCU____________________A_________ACUUC...UUU-3'\n______________GUCCGA____UAC___________GGUCUGA_____AAGAUG________UACCUC_G_ACCCUAC\n______________:|||||____|||___________|||||||_____|||||:________||||||_|_|||||||\n______________UAGGCU____AUG___________CCAGACU_____UUCUAU________AUGGAG_C_UGGGAUG\n3'-AUU...CGGUU______A______CACUUCAUUUU__________________CUUGUAGA______A_A_______-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
129 -- 135 |
1 -- 7 |
-38.7471 kcal/mol |
12.7593 kcal/mol |
12.7027 kcal/mol |
79 136@LB@ | |@LB@5'-UCC...AGCUG CCUA UCUCGCCACU UUUCU A ACUUC...UUU-3'@LB@ GUCCGA UAC GGUCUGA AAGAUG UACCUC G ACCCUAC@LB@ :||||| ||| ||||||| |||||: |||||| | |||||||@LB@ UAGGCU AUG CCAGACU UUCUAU AUGGAG C UGGGAUG@LB@3'-AUU...CGGUU A CACUUCAUUUU CUUGUAGA A A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -38.7471 kcal/mol@LB@Unfolding Energy - mRNA 12.7593 kcal/mol@LB@Unfolding Energy - sRNA 12.7027 kcal/mol@LB@@LB@Position - mRNA 80 -- 135@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 1 -- 7@LB@ |
