79 |
0.005218 |
0.2128 |
b1264 |
trpE |
-7.84 |
0.066605 |
225 -- 250 |
34 -- 59 |
component I of anthranilate synthase |
|
_____________224__________________________251\n_____________|____________________________|\n5'-UGU...CUCUC_________AACCU______________UCGCG...CGG-3'\n______________GAAC_UGCU_____GCGA_AGGCGCUUA\n______________:|||_||||_____||:|_|:||:||||\n______________UUUG_ACGA_____CGUU_UUCGUGAAU\n3'-UUU...CCUAC____A____AUU______C_________UUUUU...CAA-5'\n_____________|____________________________|\n_____________60___________________________33\n |
244 -- 250 |
34 -- 40 |
-20.2106 kcal/mol |
6.10702 kcal/mol |
6.26371 kcal/mol |
224 251@LB@ | |@LB@5'-UGU...CUCUC AACCU UCGCG...CGG-3'@LB@ GAAC UGCU GCGA AGGCGCUUA@LB@ :||| |||| ||:| |:||:||||@LB@ UUUG ACGA CGUU UUCGUGAAU@LB@3'-UUU...CCUAC A AUU C UUUUU...CAA-5'@LB@ | |@LB@ 60 33@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.2106 kcal/mol@LB@Unfolding Energy - mRNA 6.10702 kcal/mol@LB@Unfolding Energy - sRNA 6.26371 kcal/mol@LB@@LB@Position - mRNA 225 -- 250@LB@Position - sRNA 34 -- 59@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 34 -- 40@LB@ |
182 |
0.02157 |
0.3768 |
b0887 |
cydD |
-7.84 |
0.066788 |
30 -- 38 |
33 -- 41 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________29________39\n_____________|_________|\n5'-AUU...AUGGC_________UGCGG...UGA-3'\n______________AGCACUUGA\n______________|||||||:|\n______________UCGUGAAUU\n3'-UUU...GUUCU_________UUUUA...CAA-5'\n_____________|_________|\n_____________42________32\n |
32 -- 38 |
33 -- 39 |
-10.6359 kcal/mol |
1.18174 kcal/mol |
1.6188 kcal/mol |
29 39@LB@ | |@LB@5'-AUU...AUGGC UGCGG...UGA-3'@LB@ AGCACUUGA@LB@ |||||||:|@LB@ UCGUGAAUU@LB@3'-UUU...GUUCU UUUUA...CAA-5'@LB@ | |@LB@ 42 32@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -10.6359 kcal/mol@LB@Unfolding Energy - mRNA 1.18174 kcal/mol@LB@Unfolding Energy - sRNA 1.6188 kcal/mol@LB@@LB@Position - mRNA 30 -- 38@LB@Position - sRNA 33 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 33 -- 39@LB@ |
146 |
0.01469 |
0.3231 |
b0026 |
ileS |
-7.82 |
0.067581 |
147 -- 206 |
2 -- 59 |
isoleucyl-tRNA synthetase |
|
_____________146_____________________________________________________________207\n_____________|_______________________________________________________________|\n5'-AUG...UAACA____CG________CU_UUAU___AUCAAACC_____A__GA______A___________A__GACUA...CUG-3'\n______________AAAC__GCUUAAGC__G____GUA________GAAAU_CG____ACCG__GAAUCUGAUG_GU\n______________||||__||||||||__|____|:|________:||||_||____|||:__:|||||||||_||\n______________UUUG__CGAAUUCG__C____CGU________UUUUA_GC____UGGU__UUUAGACUAC_CA\n3'-UUU...CCUAC____AA________UU_UU_____GAAUU________A__AAUG____CC__________A__A-5'\n_____________|_______________________________________________________________|\n_____________60______________________________________________________________1\n |
197 -- 203 |
5 -- 11 |
-33.6314 kcal/mol |
11.9684 kcal/mol |
13.8468 kcal/mol |
146 207@LB@ | |@LB@5'-AUG...UAACA CG CU UUAU AUCAAACC A GA A A GACUA...CUG-3'@LB@ AAAC GCUUAAGC G GUA GAAAU CG ACCG GAAUCUGAUG GU@LB@ |||| |||||||| | |:| :|||| || |||: :||||||||| ||@LB@ UUUG CGAAUUCG C CGU UUUUA GC UGGU UUUAGACUAC CA@LB@3'-UUU...CCUAC AA UU UU GAAUU A AAUG CC A A-5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -33.6314 kcal/mol@LB@Unfolding Energy - mRNA 11.9684 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 147 -- 206@LB@Position - sRNA 2 -- 59@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 5 -- 11@LB@ |
72 |
0.003773 |
0.1688 |
b1860 |
ruvB |
-7.81 |
0.067658 |
103 -- 111 |
38 -- 46 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________102_______112\n_____________|_________|\n5'-ACG...AACCA_________AGCCG...GUC-3'\n______________CAAGAAGCA\n______________|||||||||\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
105 -- 111 |
38 -- 44 |
-11.4188 kcal/mol |
0.978333 kcal/mol |
2.62609 kcal/mol |
102 112@LB@ | |@LB@5'-ACG...AACCA AGCCG...GUC-3'@LB@ CAAGAAGCA@LB@ |||||||||@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.4188 kcal/mol@LB@Unfolding Energy - mRNA 0.978333 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 103 -- 111@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 38 -- 44@LB@ |
181 |
0.0215 |
0.3768 |
b3843 |
ubiD |
-7.81 |
0.067872 |
2 -- 28 |
14 -- 40 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C_______CAGUACA___AA_________UUGCA...UGG-3'\n______________GCGCUUG________GU__AUACCAGGA\n______________||:|||:________||__|:|||||||\n______________CGUGAAU________CA__UGUGGUCCU\n3'-UUU...UUCUU_______UUUUUAAG__A__________UUAGA...CAA-5'\n_____________|____________________________|\n_____________41___________________________13\n |
22 -- 28 |
14 -- 20 |
-21.9915 kcal/mol |
4.97788 kcal/mol |
9.20436 kcal/mol |
1 29@LB@ | |@LB@ 5'-C CAGUACA AA UUGCA...UGG-3'@LB@ GCGCUUG GU AUACCAGGA@LB@ ||:|||: || |:|||||||@LB@ CGUGAAU CA UGUGGUCCU@LB@3'-UUU...UUCUU UUUUUAAG A UUAGA...CAA-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -21.9915 kcal/mol@LB@Unfolding Energy - mRNA 4.97788 kcal/mol@LB@Unfolding Energy - sRNA 9.20436 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 14 -- 20@LB@ |
195 |
0.02349 |
0.3864 |
b3982 |
nusG |
-7.66 |
0.074558 |
21 -- 55 |
24 -- 55 |
transcription termination factor |
|
_____________20__________________________________56\n_____________|___________________________________|\n5'-GAC...UACCG______UU__CCGU_______GUACC_____C___AAGGU...ACA-3'\n______________UUGCUU__GC____GAAGCGC_____GAAGU_CGU\n______________||||||__||____|||||:|_____:||:|_|||\n______________AACGAA__CG____CUUCGUG_____UUUUA_GCA\n3'-UUU...CUUUG______UU__UU_________AAUU______A___AUGUG...CAA-5'\n_____________|___________________________________|\n_____________56__________________________________23\n |
35 -- 41 |
37 -- 43 |
-23.8738 kcal/mol |
9.94572 kcal/mol |
6.27216 kcal/mol |
20 56@LB@ | |@LB@5'-GAC...UACCG UU CCGU GUACC C AAGGU...ACA-3'@LB@ UUGCUU GC GAAGCGC GAAGU CGU@LB@ |||||| || |||||:| :||:| |||@LB@ AACGAA CG CUUCGUG UUUUA GCA@LB@3'-UUU...CUUUG UU UU AAUU A AUGUG...CAA-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -23.8738 kcal/mol@LB@Unfolding Energy - mRNA 9.94572 kcal/mol@LB@Unfolding Energy - sRNA 6.27216 kcal/mol@LB@@LB@Position - mRNA 21 -- 55@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 37 -- 43@LB@ |
122 |
0.01076 |
0.2828 |
b1908 |
yecA |
-7.65 |
0.074805 |
79 -- 96 |
18 -- 40 |
UPF0149 family protein |
|
_____________78_______________________97\n_____________|________________________|\n5'-UAC...UGCCU__A_____________________CUCCU...UGG-3'\n______________GC_ACUUG______UCGUUACACC\n______________||_||||:______||||||||||\n______________CG_UGAAU______AGCAAUGUGG\n3'-UUU...UUCUU________UUUUUA__________UCCUU...CAA-5'\n_____________|________________________|\n_____________41_______________________17\n |
90 -- 96 |
18 -- 24 |
-19.1188 kcal/mol |
2.30438 kcal/mol |
9.1639 kcal/mol |
78 97@LB@ | |@LB@5'-UAC...UGCCU A CUCCU...UGG-3'@LB@ GC ACUUG UCGUUACACC@LB@ || ||||: ||||||||||@LB@ CG UGAAU AGCAAUGUGG@LB@3'-UUU...UUCUU UUUUUA UCCUU...CAA-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -19.1188 kcal/mol@LB@Unfolding Energy - mRNA 2.30438 kcal/mol@LB@Unfolding Energy - sRNA 9.1639 kcal/mol@LB@@LB@Position - mRNA 79 -- 96@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 18 -- 24@LB@ |
90 |
0.006331 |
0.2266 |
b1710 |
btuE |
-7.57 |
0.078405 |
256 -- 270 |
25 -- 39 |
glutathione peroxidase |
|
_____________255_____________271\n_____________|_______________|\n5'-GCA...GACCA____G__________CCGGU...UCG-3'\n______________CGCU_GAGAAGUUCG\n______________|:||_:|:||:||||\n______________GUGA_UUUUUUAAGC\n3'-UUU...UCUUC____A__________AAUGU...CAA-5'\n_____________|_______________|\n_____________40______________24\n |
264 -- 270 |
25 -- 31 |
-13.949 kcal/mol |
4.72897 kcal/mol |
1.64678 kcal/mol |
255 271@LB@ | |@LB@5'-GCA...GACCA G CCGGU...UCG-3'@LB@ CGCU GAGAAGUUCG@LB@ |:|| :|:||:||||@LB@ GUGA UUUUUUAAGC@LB@3'-UUU...UCUUC A AAUGU...CAA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -13.949 kcal/mol@LB@Unfolding Energy - mRNA 4.72897 kcal/mol@LB@Unfolding Energy - sRNA 1.64678 kcal/mol@LB@@LB@Position - mRNA 256 -- 270@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 25 -- 31@LB@ |
66 |
0.003432 |
0.1645 |
b0882 |
clpA |
-7.45 |
0.084488 |
282 -- 290 |
34 -- 42 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________281_______291\n_____________|_________|\n5'-UUU...CCGUC_________UUACU...CGC-3'\n______________GAGCACUUG\n______________:|||||||:\n______________UUCGUGAAU\n3'-UUU...CGUUC_________UUUUU...CAA-5'\n_____________|_________|\n_____________43________33\n |
284 -- 290 |
34 -- 40 |
-10.5586 kcal/mol |
1.49281 kcal/mol |
1.61613 kcal/mol |
281 291@LB@ | |@LB@5'-UUU...CCGUC UUACU...CGC-3'@LB@ GAGCACUUG@LB@ :|||||||:@LB@ UUCGUGAAU@LB@3'-UUU...CGUUC UUUUU...CAA-5'@LB@ | |@LB@ 43 33@LB@@LB@@LB@Energy -7.45 kcal/mol@LB@Hybridization Energy -10.5586 kcal/mol@LB@Unfolding Energy - mRNA 1.49281 kcal/mol@LB@Unfolding Energy - sRNA 1.61613 kcal/mol@LB@@LB@Position - mRNA 282 -- 290@LB@Position - sRNA 34 -- 42@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 34 -- 40@LB@ |
188 |
0.02199 |
0.3768 |
b3774 |
ilvC |
-7.43 |
0.085257 |
172 -- 181 |
37 -- 46 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________171________182\n_____________|__________|\n5'-AUG...AACAA__________AACAU...GCU-3'\n______________UAAGAAGCAC\n______________:|||||||||\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
175 -- 181 |
37 -- 43 |
-13.663 kcal/mol |
1.01181 kcal/mol |
5.21654 kcal/mol |
171 182@LB@ | |@LB@5'-AUG...AACAA AACAU...GCU-3'@LB@ UAAGAAGCAC@LB@ :|||||||||@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -13.663 kcal/mol@LB@Unfolding Energy - mRNA 1.01181 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 37 -- 43@LB@ |