91 |
0.007817 |
0.2889 |
b3380 |
yhfW |
-10.82 |
0.081759 |
179 -- 205 |
41 -- 67 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________178_________________________206\n_____________|___________________________|\n5'-CUC...CAGUC_______C__UC___G__C________GCGAU...GUG-3'\n______________UUGGAAA_UC__UGG_GG_GUAAUGGC\n______________|||||||_||__|||_::_|:||||||\n______________AACCUUU_AG__ACC_UU_CGUUACCG\n3'-UUU...UAUAC_______U__UC___G__A________GGUUG...UUG-5'\n_____________|___________________________|\n_____________68__________________________40\n |
199 -- 205 |
41 -- 47 |
-26.7792 kcal/mol |
10.1319 kcal/mol |
5.83043 kcal/mol |
178 206@LB@ | |@LB@5'-CUC...CAGUC C UC G C GCGAU...GUG-3'@LB@ UUGGAAA UC UGG GG GUAAUGGC@LB@ ||||||| || ||| :: |:||||||@LB@ AACCUUU AG ACC UU CGUUACCG@LB@3'-UUU...UAUAC U UC G A GGUUG...UUG-5'@LB@ | |@LB@ 68 40@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -26.7792 kcal/mol@LB@Unfolding Energy - mRNA 10.1319 kcal/mol@LB@Unfolding Energy - sRNA 5.83043 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 41 -- 67@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
92 |
0.007983 |
0.2918 |
b2513 |
yfgM |
-8.87 |
0.203113 |
70 -- 109 |
9 -- 65 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________69___________________________________________________________110\n_____________|____________________________________________________________|\n5'-GGC...UGCUG__U_____UGA_____________C___A_______________________________AUUUG...UUG-3'\n______________GG_GAGUC___AGUGGC____UAA_GGC_CAGCAG________________UAGUGAAGG\n______________||_:|:||___||||||____:||_|||_||:|||________________:|:|:||||\n______________CC_UUUAG___UCACCG____GUU_CCG_GUUGUC________________GUUAUUUCC\n3'-UUU...UACAA__U______________UUAC___A___G______UUUUAUUUUAGACACU_________GUAUAUUG-5'\n_____________|____________________________________________________________|\n_____________66___________________________________________________________8\n |
103 -- 109 |
9 -- 15 |
-31.9345 kcal/mol |
11.9273 kcal/mol |
11.1365 kcal/mol |
69 110@LB@ | |@LB@5'-GGC...UGCUG U UGA C A AUUUG...UUG-3'@LB@ GG GAGUC AGUGGC UAA GGC CAGCAG UAGUGAAGG@LB@ || :|:|| |||||| :|| ||| ||:||| :|:|:||||@LB@ CC UUUAG UCACCG GUU CCG GUUGUC GUUAUUUCC@LB@3'-UUU...UACAA U UUAC A G UUUUAUUUUAGACACU GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -8.87 kcal/mol@LB@Hybridization Energy -31.9345 kcal/mol@LB@Unfolding Energy - mRNA 11.9273 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 70 -- 109@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 9 -- 15@LB@ |
93 |
0.008233 |
0.2977 |
b2669 |
stpA |
-8.51 |
0.236304 |
244 -- 255 |
39 -- 50 |
DNA binding protein nucleoid-associated |
|
_____________243__________256\n_____________|____________|\n5'-UUC...CCUCC____________GCGAA...UCA-3'\n______________GUGCGAUGGCUC\n______________:|||:|||||:|\n______________UACGUUACCGGG\n3'-UUU...ACCGU____________UUGUC...UUG-5'\n_____________|____________|\n_____________51___________38\n |
249 -- 255 |
39 -- 45 |
-19.1222 kcal/mol |
5.86982 kcal/mol |
4.73799 kcal/mol |
243 256@LB@ | |@LB@5'-UUC...CCUCC GCGAA...UCA-3'@LB@ GUGCGAUGGCUC@LB@ :|||:|||||:|@LB@ UACGUUACCGGG@LB@3'-UUU...ACCGU UUGUC...UUG-5'@LB@ | |@LB@ 51 38@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -19.1222 kcal/mol@LB@Unfolding Energy - mRNA 5.86982 kcal/mol@LB@Unfolding Energy - sRNA 4.73799 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 39 -- 50@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 39 -- 45@LB@ |
94 |
0.008385 |
0.3 |
b1804 |
rnd |
-8.17 |
0.271836 |
224 -- 238 |
41 -- 54 |
ribonuclease D |
|
_____________223_____________239\n_____________|_______________|\n5'-GUC...ACCAC__A_______C____UUCUU...GUA-3'\n______________GG_CGAUGCG_UGGC\n______________||_|:||||:_||||\n______________CC_GUUACGU_ACCG\n3'-UUU...AGUCA__________U____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
227 -- 233 |
46 -- 52 |
-18.0571 kcal/mol |
5.99437 kcal/mol |
3.89026 kcal/mol |
223 239@LB@ | |@LB@5'-GUC...ACCAC A C UUCUU...GUA-3'@LB@ GG CGAUGCG UGGC@LB@ || |:||||: ||||@LB@ CC GUUACGU ACCG@LB@3'-UUU...AGUCA U GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -18.0571 kcal/mol@LB@Unfolding Energy - mRNA 5.99437 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 224 -- 238@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 46 -- 52@LB@ |
95 |
0.008588 |
0.304 |
b4551 |
yheV |
-11.20 |
0.067476 |
257 -- 273 |
47 -- 65 |
DUF2387 family putative metal-binding protein |
|
_____________256_________________274\n_____________|___________________|\n5'-AUC...GCGCA___U_____A_________GGCGC...UUG-3'\n______________GGA___UCA_UGGCGAUGU\n______________|||___|||_||||:|||:\n______________CCU___AGU_ACCGUUACG\n3'-UUU...UACAA___UUU___C_________UUACC...UUG-5'\n_____________|___________________|\n_____________66__________________46\n |
267 -- 273 |
47 -- 53 |
-19.3348 kcal/mol |
4.06987 kcal/mol |
4.06844 kcal/mol |
256 274@LB@ | |@LB@5'-AUC...GCGCA U A GGCGC...UUG-3'@LB@ GGA UCA UGGCGAUGU@LB@ ||| ||| ||||:|||:@LB@ CCU AGU ACCGUUACG@LB@3'-UUU...UACAA UUU C UUACC...UUG-5'@LB@ | |@LB@ 66 46@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.3348 kcal/mol@LB@Unfolding Energy - mRNA 4.06987 kcal/mol@LB@Unfolding Energy - sRNA 4.06844 kcal/mol@LB@@LB@Position - mRNA 257 -- 273@LB@Position - sRNA 47 -- 65@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 47 -- 53@LB@ |
96 |
0.009004 |
0.3118 |
b3981 |
secE |
-8.82 |
0.207803 |
253 -- 270 |
42 -- 57 |
preprotein translocase membrane subunit |
|
_____________252________________271\n_____________|__________________|\n5'-UAA...GAUGA_____GUCGU________CAUUG...ACU-3'\n______________AGUGG_____UGUGGUGG\n______________|||||_____||:::|||\n______________UCACC_____ACGUUACC\n3'-UUU...UUUAG_____GUU__________GGGUU...UUG-5'\n_____________|__________________|\n_____________58_________________41\n |
264 -- 270 |
42 -- 48 |
-15.0916 kcal/mol |
2.64473 kcal/mol |
3.62906 kcal/mol |
252 271@LB@ | |@LB@5'-UAA...GAUGA GUCGU CAUUG...ACU-3'@LB@ AGUGG UGUGGUGG@LB@ ||||| ||:::|||@LB@ UCACC ACGUUACC@LB@3'-UUU...UUUAG GUU GGGUU...UUG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -15.0916 kcal/mol@LB@Unfolding Energy - mRNA 2.64473 kcal/mol@LB@Unfolding Energy - sRNA 3.62906 kcal/mol@LB@@LB@Position - mRNA 253 -- 270@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 42 -- 48@LB@ |
97 |
0.009098 |
0.3118 |
b3221 |
yhcH |
-21.73 |
0.000051 |
38 -- 71 |
30 -- 66 |
DUF386 family protein cupin superfamily |
|
_____________37____________________________________72\n_____________|_____________________________________|\n5'-AUC...GUGCG___U_________________U_______________GUAUC...AAG-3'\n______________UGG__GGUCGGUGGCA__GCG_UGGUCUGGCAGAAGG\n______________|||__::||:||||||__||:_|||:|:::|||||::\n______________ACC__UUAGUCACCGU__CGU_ACCGGGUUGUCUUUU\n3'-UUU...AUACA___UU___________UA___U_______________AUUUU...UUG-5'\n_____________|_____________________________________|\n_____________67____________________________________29\n |
57 -- 63 |
38 -- 44 |
-43.4799 kcal/mol |
10.7586 kcal/mol |
10.9916 kcal/mol |
37 72@LB@ | |@LB@5'-AUC...GUGCG U U GUAUC...AAG-3'@LB@ UGG GGUCGGUGGCA GCG UGGUCUGGCAGAAGG@LB@ ||| ::||:|||||| ||: |||:|:::|||||::@LB@ ACC UUAGUCACCGU CGU ACCGGGUUGUCUUUU@LB@3'-UUU...AUACA UU UA U AUUUU...UUG-5'@LB@ | |@LB@ 67 29@LB@@LB@@LB@Energy -21.73 kcal/mol@LB@Hybridization Energy -43.4799 kcal/mol@LB@Unfolding Energy - mRNA 10.7586 kcal/mol@LB@Unfolding Energy - sRNA 10.9916 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 30 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
98 |
0.009218 |
0.3118 |
b3391 |
hofQ |
-10.83 |
0.081241 |
8 -- 57 |
7 -- 65 |
DNA catabolic putative fimbrial transporter |
|
_____________7_____________________________________________________________58\n_____________|_____________________________________________________________|\n____5'-CUAUCAG____UGG_________G____GC__A___U___UGU_________________________AAAGA...UAG-3'\n______________GGGA___UAG_GGCGA_GCGA__GC_UCA_CGG___AAUAAAA_____GAC_____GGGCA\n______________||:|___:||_|||:|_||:|__||_:||_|:|___|||||||_____|||_____:||||\n______________CCUU___GUC_CCGUU_CGUU__CG_GGU_GUC___UUAUUUU_____CUG_____UCCGU\n3'-UUU...UACAA____UUA___A_____A____AC______U___UU________AGACA___UUAUU_____AUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________6\n |
43 -- 49 |
25 -- 31 |
-34.6984 kcal/mol |
11.715 kcal/mol |
12.1538 kcal/mol |
7 58@LB@ | |@LB@ 5'-CUAUCAG UGG G GC A U UGU AAAGA...UAG-3'@LB@ GGGA UAG GGCGA GCGA GC UCA CGG AAUAAAA GAC GGGCA@LB@ ||:| :|| |||:| ||:| || :|| |:| ||||||| ||| :||||@LB@ CCUU GUC CCGUU CGUU CG GGU GUC UUAUUUU CUG UCCGU@LB@3'-UUU...UACAA UUA A A AC U UU AGACA UUAUU AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -34.6984 kcal/mol@LB@Unfolding Energy - mRNA 11.715 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 8 -- 57@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 25 -- 31@LB@ |
99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
100 |
0.009417 |
0.3118 |
b4363 |
yjjB |
-11.70 |
0.052026 |
267 -- 280 |
41 -- 54 |
DUF3815 family inner membrane protein |
|
_____________266____________281\n_____________|______________|\n5'-ACU...CGGUC___UU_________GUUCA...GGG-3'\n______________GGC__UGCGAUGGU\n______________|||__|||:||||:\n______________CCG__ACGUUACCG\n3'-UUU...AGUCA___UU_________GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
274 -- 280 |
41 -- 47 |
-20.909 kcal/mol |
5.32115 kcal/mol |
3.89026 kcal/mol |
266 281@LB@ | |@LB@5'-ACU...CGGUC UU GUUCA...GGG-3'@LB@ GGC UGCGAUGGU@LB@ ||| |||:||||:@LB@ CCG ACGUUACCG@LB@3'-UUU...AGUCA UU GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -20.909 kcal/mol@LB@Unfolding Energy - mRNA 5.32115 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 267 -- 280@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 41 -- 47@LB@ |