91 |
0.006547 |
0.2317 |
b1323 |
tyrR |
-8.26 |
0.051378 |
202 -- 222 |
3 -- 23 |
aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
|
_____________201___________________223\n_____________|_____________________|\n5'-UCG...UCCCA______U________UU____AAGAC...UUG-3'\n______________UGCGUC_GGAAGUCU__UGUG\n______________|:|::|_||||:|||__||||\n______________AUGUGG_CCUUUAGA__ACAC\n3'-UUU...AAGCA______U________CU____AA-5'\n_____________|_____________________|\n_____________24____________________2\n |
209 -- 215 |
10 -- 16 |
-19.6247 kcal/mol |
3.79223 kcal/mol |
7.5769 kcal/mol |
201 223@LB@ | |@LB@5'-UCG...UCCCA U UU AAGAC...UUG-3'@LB@ UGCGUC GGAAGUCU UGUG@LB@ |:|::| ||||:||| ||||@LB@ AUGUGG CCUUUAGA ACAC@LB@3'-UUU...AAGCA U CU AA-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -19.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.79223 kcal/mol@LB@Unfolding Energy - sRNA 7.5769 kcal/mol@LB@@LB@Position - mRNA 202 -- 222@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 10 -- 16@LB@ |
92 |
0.006692 |
0.2343 |
b2421 |
cysM |
-10.79 |
0.009324 |
40 -- 63 |
37 -- 60 |
cysteine synthase B (O-acetylserine sulfhydrolase B) |
|
_____________39_______________________64\n_____________|________________________|\n5'-GCU...GAUGA__________CUC___CA______CUGAU...GCA-3'\n______________GGAACUUGCU___GCA__AAGCGC\n______________|:||||||||___|||__||||:|\n______________CUUUGAACGA___CGU__UUCGUG\n3'-UUU...CCCUA__________AUU___UC______AAUUU...CAA-5'\n_____________|________________________|\n_____________61_______________________36\n |
43 -- 49 |
51 -- 57 |
-24.0401 kcal/mol |
7.00094 kcal/mol |
6.24651 kcal/mol |
39 64@LB@ | |@LB@5'-GCU...GAUGA CUC CA CUGAU...GCA-3'@LB@ GGAACUUGCU GCA AAGCGC@LB@ |:|||||||| ||| ||||:|@LB@ CUUUGAACGA CGU UUCGUG@LB@3'-UUU...CCCUA AUU UC AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -24.0401 kcal/mol@LB@Unfolding Energy - mRNA 7.00094 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 40 -- 63@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 51 -- 57@LB@ |
93 |
0.006966 |
0.2379 |
b0436 |
tig |
-6.81 |
0.123164 |
173 -- 190 |
25 -- 42 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________172________________191\n_____________|__________________|\n5'-UAC...UGACC_______GU__UUU____AGGUA...UCA-3'\n______________GAGCACU__GA___UUUG\n______________:||||||__:|___||:|\n______________UUCGUGA__UU___AAGC\n3'-UUU...CGUUC_______AU__UUU____AAUGU...CAA-5'\n_____________|__________________|\n_____________43_________________24\n |
173 -- 179 |
36 -- 42 |
-10.673 kcal/mol |
2.21437 kcal/mol |
1.64855 kcal/mol |
172 191@LB@ | |@LB@5'-UAC...UGACC GU UUU AGGUA...UCA-3'@LB@ GAGCACU GA UUUG@LB@ :|||||| :| ||:|@LB@ UUCGUGA UU AAGC@LB@3'-UUU...CGUUC AU UUU AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -10.673 kcal/mol@LB@Unfolding Energy - mRNA 2.21437 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 173 -- 190@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 36 -- 42@LB@ |
95 |
0.007016 |
0.2379 |
b0464 |
acrR |
-8.52 |
0.043413 |
219 -- 228 |
37 -- 46 |
transcriptional repressor |
|
_____________218________229\n_____________|__________|\n5'-AAG...CCAAA__________AAGAA...CGC-3'\n______________CAAGAAGCGC\n______________||||||||:|\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
222 -- 228 |
37 -- 43 |
-15.2794 kcal/mol |
1.54243 kcal/mol |
5.21654 kcal/mol |
218 229@LB@ | |@LB@5'-AAG...CCAAA AAGAA...CGC-3'@LB@ CAAGAAGCGC@LB@ ||||||||:|@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -15.2794 kcal/mol@LB@Unfolding Energy - mRNA 1.54243 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 219 -- 228@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 37 -- 43@LB@ |
94 |
0.006975 |
0.2379 |
b1284 |
yciT |
-8.66 |
0.039674 |
34 -- 64 |
15 -- 42 |
global regulator of transcription; DeoR family |
|
_____________33_______________________________65\n_____________|________________________________|\n5'-GCA...AUCUC___A________GCA___C_____________UUGCU...CCA-3'\n______________GAG_UACUUAAA___GAA_UC_UUGCGCCAGG\n______________:||_:|||||||___:||_||_||:|:|||||\n______________UUC_GUGAAUUU___UUU_AG_AAUGUGGUCC\n3'-UUU...CGUUC__________________A__C__________UUUAG...CAA-5'\n_____________|________________________________|\n_____________43_______________________________14\n |
58 -- 64 |
15 -- 21 |
-23.4161 kcal/mol |
5.55126 kcal/mol |
9.20431 kcal/mol |
33 65@LB@ | |@LB@5'-GCA...AUCUC A GCA C UUGCU...CCA-3'@LB@ GAG UACUUAAA GAA UC UUGCGCCAGG@LB@ :|| :||||||| :|| || ||:|:|||||@LB@ UUC GUGAAUUU UUU AG AAUGUGGUCC@LB@3'-UUU...CGUUC A C UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -23.4161 kcal/mol@LB@Unfolding Energy - mRNA 5.55126 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 34 -- 64@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
97 |
0.007216 |
0.239 |
b2021 |
hisC |
-5.42 |
0.261518 |
59 -- 66 |
37 -- 44 |
histidinol-phosphate aminotransferase |
|
_____________58_______67\n_____________|________|\n5'-GUU...UUUCC________AUGAC...GGC-3'\n______________AGAAGCGC\n______________||||||:|\n______________UCUUCGUG\n3'-UUU...UUCGU________AAUUU...CAA-5'\n_____________|________|\n_____________45_______36\n |
60 -- 66 |
37 -- 43 |
-11.6623 kcal/mol |
1.85203 kcal/mol |
4.39141 kcal/mol |
58 67@LB@ | |@LB@5'-GUU...UUUCC AUGAC...GGC-3'@LB@ AGAAGCGC@LB@ ||||||:|@LB@ UCUUCGUG@LB@3'-UUU...UUCGU AAUUU...CAA-5'@LB@ | |@LB@ 45 36@LB@@LB@@LB@Energy -5.42 kcal/mol@LB@Hybridization Energy -11.6623 kcal/mol@LB@Unfolding Energy - mRNA 1.85203 kcal/mol@LB@Unfolding Energy - sRNA 4.39141 kcal/mol@LB@@LB@Position - mRNA 59 -- 66@LB@Position - sRNA 37 -- 44@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 37 -- 43@LB@ |
96 |
0.007122 |
0.239 |
b2060 |
wzc |
-5.51 |
0.249431 |
285 -- 291 |
37 -- 43 |
colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase |
|
_____________284_____292\n_____________|_______|\n5'-GAA...UCAUU_______GCUGG...GGG-3'\n______________GAAGCGC\n______________|||||:|\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
285 -- 291 |
37 -- 43 |
-9.9751 kcal/mol |
0.803081 kcal/mol |
3.6595 kcal/mol |
284 292@LB@ | |@LB@5'-GAA...UCAUU GCUGG...GGG-3'@LB@ GAAGCGC@LB@ |||||:|@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -5.51 kcal/mol@LB@Hybridization Energy -9.9751 kcal/mol@LB@Unfolding Energy - mRNA 0.803081 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 285 -- 291@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 37 -- 43@LB@ |
98 |
0.007325 |
0.239 |
b4171 |
miaA |
-8.40 |
0.046782 |
42 -- 58 |
5 -- 24 |
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase |
|
_____________41___________________59\n_____________|____________________|\n5'-GAA...GUGGA____________________AGCGA...UUU-3'\n______________UUGCAC___GAAAUCUGAUG\n______________||:|||___|||||||||||\n______________AAUGUG___CUUUAGACUAC\n3'-UUU...UAAGC______GUC___________ACAA-5'\n_____________|____________________|\n_____________25___________________4\n |
52 -- 58 |
5 -- 11 |
-19.996 kcal/mol |
4.00751 kcal/mol |
7.58501 kcal/mol |
41 59@LB@ | |@LB@5'-GAA...GUGGA AGCGA...UUU-3'@LB@ UUGCAC GAAAUCUGAUG@LB@ ||:||| |||||||||||@LB@ AAUGUG CUUUAGACUAC@LB@3'-UUU...UAAGC GUC ACAA-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -19.996 kcal/mol@LB@Unfolding Energy - mRNA 4.00751 kcal/mol@LB@Unfolding Energy - sRNA 7.58501 kcal/mol@LB@@LB@Position - mRNA 42 -- 58@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 5 -- 11@LB@ |
99 |
0.007347 |
0.239 |
b4348 |
hsdS |
-4.18 |
0.460078 |
133 -- 139 |
70 -- 76 |
specificity determinant for hsdM and hsdR |
|
_____________132_____140\n_____________|_______|\n5'-CUG...GUGAA_______CGAGC...UAA-3'\n______________CUGGGGG\n______________|||:|||\n______________GACUCCC\n3'-UUU...GCUGG_______CCAGC...CAA-5'\n_____________|_______|\n_____________77______69\n |
133 -- 139 |
70 -- 76 |
-10.3039 kcal/mol |
2.51492 kcal/mol |
3.60488 kcal/mol |
132 140@LB@ | |@LB@5'-CUG...GUGAA CGAGC...UAA-3'@LB@ CUGGGGG@LB@ |||:|||@LB@ GACUCCC@LB@3'-UUU...GCUGG CCAGC...CAA-5'@LB@ | |@LB@ 77 69@LB@@LB@@LB@Energy -4.18 kcal/mol@LB@Hybridization Energy -10.3039 kcal/mol@LB@Unfolding Energy - mRNA 2.51492 kcal/mol@LB@Unfolding Energy - sRNA 3.60488 kcal/mol@LB@@LB@Position - mRNA 133 -- 139@LB@Position - sRNA 70 -- 76@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 70 -- 76@LB@ |
100 |
0.007523 |
0.2423 |
b1744 |
astE |
-9.81 |
0.018546 |
117 -- 135 |
36 -- 53 |
succinylglutamate desuccinylase |
|
_____________116_________________136\n_____________|___________________|\n5'-GGU...GCUGC__GAA______________GGAUG...UGC-3'\n______________GC___GGGCGGGAAGCACU\n______________||___::||::||||||||\n______________CG___UUCGUUCUUCGUGA\n3'-UUU...UUGAA__AA_______________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
129 -- 135 |
36 -- 42 |
-22.0517 kcal/mol |
6.14291 kcal/mol |
6.10238 kcal/mol |
116 136@LB@ | |@LB@5'-GGU...GCUGC GAA GGAUG...UGC-3'@LB@ GC GGGCGGGAAGCACU@LB@ || ::||::||||||||@LB@ CG UUCGUUCUUCGUGA@LB@3'-UUU...UUGAA AA AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -22.0517 kcal/mol@LB@Unfolding Energy - mRNA 6.14291 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 117 -- 135@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 36 -- 42@LB@ |