| 29 |
0.001819 |
0.2065 |
b3648 |
gmk |
-8.89 |
0.201842 |
236 -- 243 |
51 -- 58 |
guanylate kinase |
|
_____________235______244\n_____________|________|\n5'-GUG...GCCCC________CGGGU...CCC-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
237 -- 243 |
51 -- 57 |
-13.8917 kcal/mol |
2.3096 kcal/mol |
2.69685 kcal/mol |
235 244@LB@ | |@LB@5'-GUG...GCCCC CGGGU...CCC-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -13.8917 kcal/mol@LB@Unfolding Energy - mRNA 2.3096 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 236 -- 243@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 149 |
0.01777 |
0.3828 |
b3024 |
ygiW |
-12.90 |
0.027028 |
214 -- 237 |
39 -- 58 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________213______________________238\n_____________|________________________|\n5'-UGA...AUUCG___CA_____CGCA__________UGUGC...AAA-3'\n______________CAG__GUAAU____GUAAUGGCCC\n______________|||__|:|||____|:||||||||\n______________GUC__CGUUA____CGUUACCGGG\n3'-UUU...UUUUA___AC___________________UUGUC...UUG-5'\n_____________|________________________|\n_____________59_______________________38\n |
231 -- 237 |
39 -- 45 |
-23.1488 kcal/mol |
3.67833 kcal/mol |
6.56779 kcal/mol |
213 238@LB@ | |@LB@5'-UGA...AUUCG CA CGCA UGUGC...AAA-3'@LB@ CAG GUAAU GUAAUGGCCC@LB@ ||| |:||| |:||||||||@LB@ GUC CGUUA CGUUACCGGG@LB@3'-UUU...UUUUA AC UUGUC...UUG-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -23.1488 kcal/mol@LB@Unfolding Energy - mRNA 3.67833 kcal/mol@LB@Unfolding Energy - sRNA 6.56779 kcal/mol@LB@@LB@Position - mRNA 214 -- 237@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 62 |
0.004714 |
0.2539 |
b0973 |
hyaB |
-9.08 |
0.185506 |
169 -- 187 |
48 -- 64 |
hydrogenase 1 large subunit |
|
_____________168_________________188\n_____________|___________________|\n5'-GGU...AAACC___C_____CCA_______AGGAU...GCG-3'\n______________GAA_AUCAG___GGCAAUG\n______________|||_|||||___|||||||\n______________CUU_UAGUC___CCGUUAC\n3'-UUU...ACAAC___U_____A_________GUUAC...UUG-5'\n_____________|___________________|\n_____________65__________________47\n |
181 -- 187 |
48 -- 54 |
-17.0784 kcal/mol |
4.02672 kcal/mol |
3.97302 kcal/mol |
168 188@LB@ | |@LB@5'-GGU...AAACC C CCA AGGAU...GCG-3'@LB@ GAA AUCAG GGCAAUG@LB@ ||| ||||| |||||||@LB@ CUU UAGUC CCGUUAC@LB@3'-UUU...ACAAC U A GUUAC...UUG-5'@LB@ | |@LB@ 65 47@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -17.0784 kcal/mol@LB@Unfolding Energy - mRNA 4.02672 kcal/mol@LB@Unfolding Energy - sRNA 3.97302 kcal/mol@LB@@LB@Position - mRNA 169 -- 187@LB@Position - sRNA 48 -- 64@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 200 |
0.0254 |
0.4256 |
b0975 |
hyaD |
-14.05 |
0.013908 |
10 -- 31 |
42 -- 66 |
hydrogenase 1 maturation protease |
|
_____________9_________________________32\n_____________|_________________________|\n5'-UUU...UCUAC____CG___________CU______ACAUU...ACC-3'\n______________UGGA_____GGUGGCAA__CAAUGG\n______________||||_____:|||||||__||||||\n______________ACCU_____UCACCGUU__GUUACC\n3'-UUU...AUACA____UUUAG________AC______GGGUU...UUG-5'\n_____________|_________________________|\n_____________67________________________41\n |
17 -- 23 |
50 -- 56 |
-23.7385 kcal/mol |
4.08533 kcal/mol |
5.59884 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...UCUAC CG CU ACAUU...ACC-3'@LB@ UGGA GGUGGCAA CAAUGG@LB@ |||| :||||||| ||||||@LB@ ACCU UCACCGUU GUUACC@LB@3'-UUU...AUACA UUUAG AC GGGUU...UUG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -23.7385 kcal/mol@LB@Unfolding Energy - mRNA 4.08533 kcal/mol@LB@Unfolding Energy - sRNA 5.59884 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 109 |
0.01013 |
0.3127 |
b3805 |
hemC |
-12.29 |
0.037947 |
146 -- 209 |
1 -- 60 |
hydroxymethylbilane synthase |
|
_____________145_____________________________________________________________________210\n_____________|_______________________________________________________________________|\n5'-AAA...CUGAC____CUC_____AGG____UAG_____A________U____________________CAA______UA___AAUGU...GCC-3'\n______________AUCA___UGGCA___AUGU___GAUGG_CC_ACGGA_GAUAA______UGACGGUAA___GCAUGU__GAC\n______________||||___|||||___|||:___:||||_||_||:||_:||||______||||::|||___||||:|__:||\n______________UAGU___ACCGU___UACG___UUACC_GG_UGUCU_UUAUU______ACUGUUAUU___CGUAUA__UUG\n3'-UUU...CCUUU____C______________________G__U_____U_____UUAGAC_________UC____________-5'\n_____________|______________________________________________________________________|\n_____________61_____________________________________________________________________1\n |
189 -- 195 |
12 -- 18 |
-39.6606 kcal/mol |
15.2176 kcal/mol |
12.1554 kcal/mol |
145 210@LB@ | |@LB@5'-AAA...CUGAC CUC AGG UAG A U CAA UA AAUGU...GCC-3'@LB@ AUCA UGGCA AUGU GAUGG CC ACGGA GAUAA UGACGGUAA GCAUGU GAC@LB@ |||| ||||| |||: :|||| || ||:|| :|||| ||||::||| ||||:| :||@LB@ UAGU ACCGU UACG UUACC GG UGUCU UUAUU ACUGUUAUU CGUAUA UUG@LB@3'-UUU...CCUUU C G U U UUAGAC UC -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -39.6606 kcal/mol@LB@Unfolding Energy - mRNA 15.2176 kcal/mol@LB@Unfolding Energy - sRNA 12.1554 kcal/mol@LB@@LB@Position - mRNA 146 -- 209@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 136 |
0.01532 |
0.3774 |
b3054 |
ygiF |
-8.05 |
0.285135 |
192 -- 208 |
38 -- 53 |
inorganic triphosphatase |
|
_____________191_______________209\n_____________|_________________|\n5'-GGC...GAUAA____AG__C________GGAAA...CCG-3'\n______________GUAA__GC_AUGGCUCA\n______________|:||__||_|||||:||\n______________CGUU__CG_UACCGGGU\n3'-UUU...GUCAC____A___U________UGUCU...UUG-5'\n_____________|_________________|\n_____________54________________37\n |
202 -- 208 |
38 -- 44 |
-16.8567 kcal/mol |
4.04422 kcal/mol |
4.7597 kcal/mol |
191 209@LB@ | |@LB@5'-GGC...GAUAA AG C GGAAA...CCG-3'@LB@ GUAA GC AUGGCUCA@LB@ |:|| || |||||:||@LB@ CGUU CG UACCGGGU@LB@3'-UUU...GUCAC A U UGUCU...UUG-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -16.8567 kcal/mol@LB@Unfolding Energy - mRNA 4.04422 kcal/mol@LB@Unfolding Energy - sRNA 4.7597 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 67 |
0.005347 |
0.2645 |
b4278 |
insG |
-9.22 |
0.173962 |
151 -- 164 |
45 -- 58 |
IS4 transposase |
|
_____________150____________165\n_____________|______________|\n5'-GUU...CGAUC_______U______GAAUC...CUC-3'\n______________CAGUGGC_GUGUAA\n______________|||||||_:||:||\n______________GUCACCG_UACGUU\n3'-UUU...UUUUA_______U______ACCGG...UUG-5'\n_____________|______________|\n_____________59_____________44\n |
151 -- 157 |
52 -- 58 |
-18.8848 kcal/mol |
6.17717 kcal/mol |
3.48403 kcal/mol |
150 165@LB@ | |@LB@5'-GUU...CGAUC U GAAUC...CUC-3'@LB@ CAGUGGC GUGUAA@LB@ ||||||| :||:||@LB@ GUCACCG UACGUU@LB@3'-UUU...UUUUA U ACCGG...UUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -18.8848 kcal/mol@LB@Unfolding Energy - mRNA 6.17717 kcal/mol@LB@Unfolding Energy - sRNA 3.48403 kcal/mol@LB@@LB@Position - mRNA 151 -- 164@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 115 |
0.0114 |
0.3326 |
b2531 |
iscR |
-8.61 |
0.227442 |
42 -- 64 |
8 -- 31 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________41_______________________65\n_____________|________________________|\n5'-AUG...GCCAC_______AAA______C_______UAAAU...AAC-3'\n______________GAUAAAA____UGGCA_UGAAGGU\n______________:||||||____||:||_|:||||:\n______________UUAUUUU____ACUGU_AUUUCCG\n3'-UUU...GUCUU_______AGAC_____U_______UAUAUUG-5'\n_____________|________________________|\n_____________32_______________________7\n |
58 -- 64 |
8 -- 14 |
-15.5579 kcal/mol |
1.96266 kcal/mol |
4.98963 kcal/mol |
41 65@LB@ | |@LB@5'-AUG...GCCAC AAA C UAAAU...AAC-3'@LB@ GAUAAAA UGGCA UGAAGGU@LB@ :|||||| ||:|| |:||||:@LB@ UUAUUUU ACUGU AUUUCCG@LB@3'-UUU...GUCUU AGAC U UAUAUUG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -15.5579 kcal/mol@LB@Unfolding Energy - mRNA 1.96266 kcal/mol@LB@Unfolding Energy - sRNA 4.98963 kcal/mol@LB@@LB@Position - mRNA 42 -- 64@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 161 |
0.01858 |
0.3864 |
b3237 |
argR |
-5.47 |
0.658327 |
53 -- 70 |
1 -- 21 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________52____________________71\n_____________|_____________________|\n5'-ACA...AUGCC______C___________UU_UCAAU...UGC-3'\n______________GUGACG____AGGCAUGU__C\n______________|||||:____||||||:|__|\n______________CACUGU____UCCGUAUA__G\n3'-UUU...UUAGA______UAUU________UU_-5'\n_____________|____________________|\n_____________22___________________1\n |
61 -- 67 |
4 -- 10 |
-16.8661 kcal/mol |
6.97949 kcal/mol |
4.41334 kcal/mol |
52 71@LB@ | |@LB@5'-ACA...AUGCC C UU UCAAU...UGC-3'@LB@ GUGACG AGGCAUGU C@LB@ |||||: ||||||:| |@LB@ CACUGU UCCGUAUA G@LB@3'-UUU...UUAGA UAUU UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -16.8661 kcal/mol@LB@Unfolding Energy - mRNA 6.97949 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 53 -- 70@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 110 |
0.01026 |
0.313 |
b0063 |
araB |
-12.48 |
0.034183 |
202 -- 260 |
1 -- 55 |
L-ribulokinase |
|
_____________201___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-CGG...AACGA_______U____U_____U____UUU__C_____U___________GCUUU____GUG___UGCGC...GGU-3'\n______________UGGCGAU_GCAA_UGGCC_CGAU___GG_AGUGA__UCUGUG_CGA_____GGCG___GAC\n______________||||:||_||||_|||||_|:|:___|:_|:|:|__||||||_|:|_____|||:___:||\n______________ACCGUUA_CGUU_ACCGG_GUUG___CU_UUAUU__AGACAC_GUU_____CCGU___UUG\n3'-UUU...UAGUC_______________________U____U_____UU______U___AUUU_____AUA___-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
202 -- 208 |
49 -- 55 |
-46.0779 kcal/mol |
21.5533 kcal/mol |
12.0455 kcal/mol |
201 261@LB@ | |@LB@5'-CGG...AACGA U U U UUU C U GCUUU GUG UGCGC...GGU-3'@LB@ UGGCGAU GCAA UGGCC CGAU GG AGUGA UCUGUG CGA GGCG GAC@LB@ ||||:|| |||| ||||| |:|: |: |:|:| |||||| |:| |||: :||@LB@ ACCGUUA CGUU ACCGG GUUG CU UUAUU AGACAC GUU CCGU UUG@LB@3'-UUU...UAGUC U U UU U AUUU AUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -46.0779 kcal/mol@LB@Unfolding Energy - mRNA 21.5533 kcal/mol@LB@Unfolding Energy - sRNA 12.0455 kcal/mol@LB@@LB@Position - mRNA 202 -- 260@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
