| 139 |
0.0159 |
0.3828 |
b2108 |
yehA |
-9.84 |
0.131393 |
50 -- 60 |
55 -- 65 |
putative fimbrial-like adhesin protein |
|
_____________49__________61\n_____________|___________|\n5'-GUU...GGCCA___________UAUUU...UUG-3'\n______________GGGAAGUCAGU\n______________||:||:|||||\n______________CCUUUUAGUCA\n3'-UUU...UACAA___________CCGUU...UUG-5'\n_____________|___________|\n_____________66__________54\n |
54 -- 60 |
55 -- 61 |
-13.8721 kcal/mol |
3.08221 kcal/mol |
0.952476 kcal/mol |
49 61@LB@ | |@LB@5'-GUU...GGCCA UAUUU...UUG-3'@LB@ GGGAAGUCAGU@LB@ ||:||:|||||@LB@ CCUUUUAGUCA@LB@3'-UUU...UACAA CCGUU...UUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -13.8721 kcal/mol@LB@Unfolding Energy - mRNA 3.08221 kcal/mol@LB@Unfolding Energy - sRNA 0.952476 kcal/mol@LB@@LB@Position - mRNA 50 -- 60@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 112 |
0.0105 |
0.3154 |
b2136 |
yohD |
-14.01 |
0.014269 |
227 -- 295 |
6 -- 72 |
DedA family inner membrane protein |
|
_____________226_____________________________________________________________________296\n_____________|_______________________________________________________________________|\n5'-GAU...UCACA_____GUUAUGCCG__C____________A____________________C_____UUUGCUG________UGCGG-3'\n______________AUAUG_________CG_UGGUGAU_CGGU_GCCUGGCGGAAGGUGAAA_C_GUGAC_______GGAGGCGU\n______________|||||_________|:_|||::||_|::|_|||:::|:|||::|:|||_|_|||||_______::||||:|\n______________UAUAC_________GU_ACCGUUA_GUUA_CGGGUUGUCUUUUAUUUU_G_CACUG_______UUUCCGUA\n3'-UUU...AAAAA_____AACCUUUUA__C_______C____C__________________A_A_____UUA____________UAUUG-5'\n_____________|_______________________________________________________________________|\n_____________73______________________________________________________________________5\n |
289 -- 295 |
6 -- 12 |
-51.7055 kcal/mol |
25.533 kcal/mol |
12.1614 kcal/mol |
226 296@LB@ | |@LB@5'-GAU...UCACA GUUAUGCCG C A C UUUGCUG UGCGG-3'@LB@ AUAUG CG UGGUGAU CGGU GCCUGGCGGAAGGUGAAA C GUGAC GGAGGCGU@LB@ ||||| |: |||::|| |::| |||:::|:|||::|:||| | ||||| ::||||:|@LB@ UAUAC GU ACCGUUA GUUA CGGGUUGUCUUUUAUUUU G CACUG UUUCCGUA@LB@3'-UUU...AAAAA AACCUUUUA C C C A A UUA UAUUG-5'@LB@ | |@LB@ 73 5@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -51.7055 kcal/mol@LB@Unfolding Energy - mRNA 25.533 kcal/mol@LB@Unfolding Energy - sRNA 12.1614 kcal/mol@LB@@LB@Position - mRNA 227 -- 295@LB@Position - sRNA 6 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 179 |
0.02223 |
0.4143 |
b2167 |
fruA |
-7.15 |
0.399094 |
192 -- 200 |
5 -- 13 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________191_______201\n_____________|_________|\n5'-CGC...GCAGG_________AUGAA...AAA-3'\n______________AGAGGCAUA\n______________|:|||||||\n______________UUUCCGUAU\n3'-UUU...UGUUA_________AUUG-5'\n_____________|_________|\n_____________14________4\n |
194 -- 200 |
5 -- 11 |
-11.8443 kcal/mol |
1.8873 kcal/mol |
2.80332 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...GCAGG AUGAA...AAA-3'@LB@ AGAGGCAUA@LB@ |:|||||||@LB@ UUUCCGUAU@LB@3'-UUU...UGUUA AUUG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -11.8443 kcal/mol@LB@Unfolding Energy - mRNA 1.8873 kcal/mol@LB@Unfolding Energy - sRNA 2.80332 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 168 |
0.01999 |
0.3993 |
b2171 |
yeiP |
-9.24 |
0.172435 |
8 -- 24 |
39 -- 54 |
elongation factor P-like protein |
|
_____________7_________________25\n_____________|_________________|\n____5'-UUGAAGG__________CAC____CGCAA...GCG-3'\n______________GGCAGUGCAA___GCCC\n______________||||:|||||___||||\n______________CCGUUACGUU___CGGG\n3'-UUU...AGUCA__________AC_____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
11 -- 17 |
45 -- 51 |
-22.1688 kcal/mol |
8.16527 kcal/mol |
4.76022 kcal/mol |
7 25@LB@ | |@LB@ 5'-UUGAAGG CAC CGCAA...GCG-3'@LB@ GGCAGUGCAA GCCC@LB@ ||||:||||| ||||@LB@ CCGUUACGUU CGGG@LB@3'-UUU...AGUCA AC UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -22.1688 kcal/mol@LB@Unfolding Energy - mRNA 8.16527 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 8 -- 24@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 114 |
0.01136 |
0.3326 |
b2203 |
napB |
-12.98 |
0.025868 |
242 -- 255 |
39 -- 54 |
nitrate reductase small cytochrome C550 subunit periplasmic |
|
_____________241______________256\n_____________|________________|\n5'-ACC...UGGAC________________UGGUG...UUA-3'\n______________GGCGAUGC__UGGCCC\n______________|||:||||__||||||\n______________CCGUUACG__ACCGGG\n3'-UUU...AGUCA________UU______UUGUC...UUG-5'\n_____________|________________|\n_____________55_______________38\n |
243 -- 249 |
47 -- 53 |
-25.1467 kcal/mol |
7.40583 kcal/mol |
4.76022 kcal/mol |
241 256@LB@ | |@LB@5'-ACC...UGGAC UGGUG...UUA-3'@LB@ GGCGAUGC UGGCCC@LB@ |||:|||| ||||||@LB@ CCGUUACG ACCGGG@LB@3'-UUU...AGUCA UU UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1467 kcal/mol@LB@Unfolding Energy - mRNA 7.40583 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 1 |
0 |
0 |
b2215 |
ompC |
-25.52 |
0.000001 |
134 -- 186 |
1 -- 70 |
outer membrane porin protein C |
|
_____________133____________________________________________________________________187\n_____________|______________________________________________________________________|\n5'-AUC...GAUUA___AG__UU_____________________________________AAGCA___________________AGAGG...AUC-3'\n______________AUG__GG__AAUCAGU____AUGCAGUGGC__________AUAAAA________AAUAAAGGCAUAUAAC\n______________|||__||__|||||||____|||||:||||__________||||||________||||||||||||||||\n______________UAC__CC__UUAGUCA____UACGUUACCG__________UAUUUU________UUAUUUCCGUAUAUUG\n3'-UUU...AAAUA___AA__UU_______CCGU__________GGUUGUCUUU______AGACACUG________________-5'\n_____________|_____________________________________________________________________|\n_____________71____________________________________________________________________1\n |
180 -- 186 |
1 -- 7 |
-48.3995 kcal/mol |
10.7142 kcal/mol |
12.1618 kcal/mol |
133 187@LB@ | |@LB@5'-AUC...GAUUA AG UU AAGCA AGAGG...AUC-3'@LB@ AUG GG AAUCAGU AUGCAGUGGC AUAAAA AAUAAAGGCAUAUAAC@LB@ ||| || ||||||| |||||:|||| |||||| ||||||||||||||||@LB@ UAC CC UUAGUCA UACGUUACCG UAUUUU UUAUUUCCGUAUAUUG@LB@3'-UUU...AAAUA AA UU CCGU GGUUGUCUUU AGACACUG -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -25.52 kcal/mol@LB@Hybridization Energy -48.3995 kcal/mol@LB@Unfolding Energy - mRNA 10.7142 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 134 -- 186@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 162 |
0.01861 |
0.3864 |
b2280 |
nuoJ |
-11.65 |
0.053319 |
100 -- 143 |
1 -- 58 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________99____________________________________________________________144\n_____________|_____________________________________________________________|\n5'-GAU...UCUAC___A_______________AA_______C__________________________A_____AGAGA...UUA-3'\n______________CGG_UGGCAG_GU_AUGGC__UCGACGG_AAA_____________GAUAAGGGCG___AGC\n______________|:|_|||||:_|:_|||||__:|:||:|_|||_____________:||||:|||:___|:|\n______________GUC_ACCGUU_CG_UACCG__GGUUGUC_UUU_____________UUAUUUCCGU___UUG\n3'-UUU...UUUUA__________A__U______________U___AUUUUAGACACUG__________AUA___-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
133 -- 139 |
7 -- 13 |
-36.1441 kcal/mol |
12.3456 kcal/mol |
12.1476 kcal/mol |
99 144@LB@ | |@LB@5'-GAU...UCUAC A AA C A AGAGA...UUA-3'@LB@ CGG UGGCAG GU AUGGC UCGACGG AAA GAUAAGGGCG AGC@LB@ |:| |||||: |: ||||| :|:||:| ||| :||||:|||: |:|@LB@ GUC ACCGUU CG UACCG GGUUGUC UUU UUAUUUCCGU UUG@LB@3'-UUU...UUUUA A U U AUUUUAGACACUG AUA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -36.1441 kcal/mol@LB@Unfolding Energy - mRNA 12.3456 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 100 -- 143@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 84 |
0.00705 |
0.2822 |
b2341 |
fadJ |
-9.52 |
0.152421 |
171 -- 187 |
39 -- 55 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________170_______________188\n_____________|_________________|\n5'-CAU...GGGCU_____CG__________UGGAG...CGG-3'\n______________UGGCG__GCAAUGGUUC\n______________||||:__|||||||::|\n______________ACCGU__CGUUACCGGG\n3'-UUU...UAGUC_____UA__________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
181 -- 187 |
39 -- 45 |
-22.4983 kcal/mol |
8.21876 kcal/mol |
4.76312 kcal/mol |
170 188@LB@ | |@LB@5'-CAU...GGGCU CG UGGAG...CGG-3'@LB@ UGGCG GCAAUGGUUC@LB@ ||||: |||||||::|@LB@ ACCGU CGUUACCGGG@LB@3'-UUU...UAGUC UA UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -22.4983 kcal/mol@LB@Unfolding Energy - mRNA 8.21876 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 171 -- 187@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 39 -- 45@LB@ |
