10 |
2.916e-05 |
0.0098 |
b1890 |
motA |
-14.10 |
0.019983 |
224 -- 242 |
28 -- 46 |
proton conductor component of flagella motor |
|
_____________223_________________243\n_____________|___________________|\n5'-GAC...UACCU___U_____C_________UUCGG...AAC-3'\n______________GGU_GUUCU_GGUACAGUU\n______________|||_||||:_|||||||:|\n______________CCA_CAAGG_CCAUGUCGA\n3'-UUU...UUCCU___C_____A_________UCGUA...UCG-5'\n_____________|___________________|\n_____________47__________________27\n |
236 -- 242 |
28 -- 34 |
-23.9025 kcal/mol |
5.49413 kcal/mol |
4.3041 kcal/mol |
223 243@LB@ | |@LB@5'-GAC...UACCU U C UUCGG...AAC-3'@LB@ GGU GUUCU GGUACAGUU@LB@ ||| ||||: |||||||:|@LB@ CCA CAAGG CCAUGUCGA@LB@3'-UUU...UUCCU C A UCGUA...UCG-5'@LB@ | |@LB@ 47 27@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.9025 kcal/mol@LB@Unfolding Energy - mRNA 5.49413 kcal/mol@LB@Unfolding Energy - sRNA 4.3041 kcal/mol@LB@@LB@Position - mRNA 224 -- 242@LB@Position - sRNA 28 -- 46@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 28 -- 34@LB@ |
104 |
0.003825 |
0.1236 |
b0081 |
mraZ |
-12.90 |
0.040525 |
169 -- 210 |
15 -- 49 |
RsmH methytransferase inhibitor |
|
_____________168________________________________________211\n_____________|__________________________________________|\n5'-GAU...AUUGU____CAAA____GAAUAAGG____A_________GUUCC___GAGCA...AAA-3'\n______________GGGG____GUGG________GGUG_GGCUGGCAU_____GGG\n______________||:|____||||________|||:_:|||:||||_____|||\n______________CCUC____CACC________CCAU_UCGAUCGUA_____CCC\n3'-UUU...CGAUU____________AAGGA_______G_________AAAUA___AAUAC...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________14\n |
196 -- 202 |
23 -- 29 |
-32.8076 kcal/mol |
15.3299 kcal/mol |
4.57366 kcal/mol |
168 211@LB@ | |@LB@5'-GAU...AUUGU CAAA GAAUAAGG A GUUCC GAGCA...AAA-3'@LB@ GGGG GUGG GGUG GGCUGGCAU GGG@LB@ ||:| |||| |||: :|||:|||| |||@LB@ CCUC CACC CCAU UCGAUCGUA CCC@LB@3'-UUU...CGAUU AAGGA G AAAUA AAUAC...UCG-5'@LB@ | |@LB@ 50 14@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -32.8076 kcal/mol@LB@Unfolding Energy - mRNA 15.3299 kcal/mol@LB@Unfolding Energy - sRNA 4.57366 kcal/mol@LB@@LB@Position - mRNA 169 -- 210@LB@Position - sRNA 15 -- 49@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 23 -- 29@LB@ |
180 |
0.01039 |
0.1919 |
b1778 |
msrB |
-9.69 |
0.189810 |
88 -- 95 |
29 -- 36 |
methionine sulfoxide reductase B |
|
_____________87_______96\n_____________|________|\n5'-CUU...AUUUA________CAUUU...GUC-3'\n______________GGUGCAGC\n______________|||:||||\n______________CCAUGUCG\n3'-UUU...AAGGA________AUCGU...UCG-5'\n_____________|________|\n_____________37_______28\n |
89 -- 95 |
29 -- 35 |
-13.558 kcal/mol |
2.69806 kcal/mol |
1.16901 kcal/mol |
87 96@LB@ | |@LB@5'-CUU...AUUUA CAUUU...GUC-3'@LB@ GGUGCAGC@LB@ |||:||||@LB@ CCAUGUCG@LB@3'-UUU...AAGGA AUCGU...UCG-5'@LB@ | |@LB@ 37 28@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -13.558 kcal/mol@LB@Unfolding Energy - mRNA 2.69806 kcal/mol@LB@Unfolding Energy - sRNA 1.16901 kcal/mol@LB@@LB@Position - mRNA 88 -- 95@LB@Position - sRNA 29 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 29 -- 35@LB@ |
43 |
0.0008959 |
0.07003 |
b3068 |
mug |
-12.52 |
0.050096 |
232 -- 248 |
1 -- 17 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________231_______________249\n_____________|_________________|\n5'-UGG...GUUAC____C_______G____AUCAA...CGG-3'\n______________GGGU_GUGUUUU_CGGU\n______________||||_:||||||_|:|:\n______________CCCA_UACAAAA_GUCG\n3'-UUU...AAAUA____A_______A____-5'\n_____________|________________|\n_____________18_______________1\n |
237 -- 243 |
6 -- 12 |
-17.5569 kcal/mol |
4.10869 kcal/mol |
0.931609 kcal/mol |
231 249@LB@ | |@LB@5'-UGG...GUUAC C G AUCAA...CGG-3'@LB@ GGGU GUGUUUU CGGU@LB@ |||| :|||||| |:|:@LB@ CCCA UACAAAA GUCG@LB@3'-UUU...AAAUA A A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -17.5569 kcal/mol@LB@Unfolding Energy - mRNA 4.10869 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 232 -- 248@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 6 -- 12@LB@ |
66 |
0.001771 |
0.09017 |
b0924 |
mukB |
-12.08 |
0.063147 |
4 -- 24 |
1 -- 22 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________3______________________25\n_____________|______________________|\n________5'-UGG________CCACGACAG_____AAGUU...CUG-3'\n______________UUUAUGGG__________CAGC\n______________||||||||__________||||\n______________AAAUACCC__________GUCG\n3'-UUU...UCGUA________AAUACAAAAA____-5'\n_____________|_____________________|\n_____________23____________________1\n |
5 -- 11 |
15 -- 21 |
-14.8798 kcal/mol |
1.84387 kcal/mol |
0.958674 kcal/mol |
3 25@LB@ | |@LB@ 5'-UGG CCACGACAG AAGUU...CUG-3'@LB@ UUUAUGGG CAGC@LB@ |||||||| ||||@LB@ AAAUACCC GUCG@LB@3'-UUU...UCGUA AAUACAAAAA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -14.8798 kcal/mol@LB@Unfolding Energy - mRNA 1.84387 kcal/mol@LB@Unfolding Energy - sRNA 0.958674 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 15 -- 21@LB@ |
62 |
0.00164 |
0.08891 |
b0922 |
mukF |
-17.51 |
0.001582 |
1 -- 30 |
14 -- 38 |
chromosome condensin MukBEF kleisin-like subunit binds calcium |
|
______________1_____________________________31\n______________|_____________________________|\n___________5'-____AAGAA__U________AA________AAGAC...UGG-3'\n______________CUGG_____GC_GGUUGGCA__UUAUGGGU\n______________||||_____:|_:|:|:|||__||||||||\n______________GACC_____UG_UCGAUCGU__AAUACCCA\n3'-UUU...CCAAG____A_______________AA________AUACA...UCG-5'\n_____________|______________________________|\n_____________39_____________________________13\n |
24 -- 30 |
14 -- 20 |
-25.2653 kcal/mol |
3.2564 kcal/mol |
4.5012 kcal/mol |
1 31@LB@ | |@LB@ 5'- AAGAA U AA AAGAC...UGG-3'@LB@ CUGG GC GGUUGGCA UUAUGGGU@LB@ |||| :| :|:|:||| ||||||||@LB@ GACC UG UCGAUCGU AAUACCCA@LB@3'-UUU...CCAAG A AA AUACA...UCG-5'@LB@ | |@LB@ 39 13@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -25.2653 kcal/mol@LB@Unfolding Energy - mRNA 3.2564 kcal/mol@LB@Unfolding Energy - sRNA 4.5012 kcal/mol@LB@@LB@Position - mRNA 1 -- 30@LB@Position - sRNA 14 -- 38@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 14 -- 20@LB@ |
86 |
0.002806 |
0.1082 |
b1107 |
nagZ |
-13.13 |
0.035629 |
98 -- 119 |
25 -- 47 |
beta N-acetyl-glucosaminidase |
|
_____________97______________________120\n_____________|_______________________|\n5'-AUU...AAGCA_________GA_____C______GACAA...CGC-3'\n______________GGGUGGUUU___GUAC_GCUGGC\n______________:|||||||:___||||_|||:||\n______________UCCACCAAG___CAUG_CGAUCG\n3'-UUU...AUUCC_________GAC____U______UAAAA...UCG-5'\n_____________|_______________________|\n_____________48______________________24\n |
100 -- 106 |
39 -- 45 |
-29.3426 kcal/mol |
11.6523 kcal/mol |
4.55753 kcal/mol |
97 120@LB@ | |@LB@5'-AUU...AAGCA GA C GACAA...CGC-3'@LB@ GGGUGGUUU GUAC GCUGGC@LB@ :|||||||: |||| |||:||@LB@ UCCACCAAG CAUG CGAUCG@LB@3'-UUU...AUUCC GAC U UAAAA...UCG-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -29.3426 kcal/mol@LB@Unfolding Energy - mRNA 11.6523 kcal/mol@LB@Unfolding Energy - sRNA 4.55753 kcal/mol@LB@@LB@Position - mRNA 98 -- 119@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 39 -- 45@LB@ |
169 |
0.009174 |
0.1803 |
b1467 |
narY |
-12.55 |
0.049142 |
183 -- 194 |
25 -- 36 |
nitrate reductase 2 (NRZ) beta subunit |
|
_____________182__________195\n_____________|____________|\n5'-CGC...GAUCA_______GA___GAAAA...GCG-3'\n______________GGUACAG__GGC\n______________|||||||__:||\n______________CCAUGUC__UCG\n3'-UUU...AAGGA_______GA___UAAAA...UCG-5'\n_____________|____________|\n_____________37___________24\n |
183 -- 189 |
30 -- 36 |
-16.0252 kcal/mol |
2.04549 kcal/mol |
1.42738 kcal/mol |
182 195@LB@ | |@LB@5'-CGC...GAUCA GA GAAAA...GCG-3'@LB@ GGUACAG GGC@LB@ ||||||| :||@LB@ CCAUGUC UCG@LB@3'-UUU...AAGGA GA UAAAA...UCG-5'@LB@ | |@LB@ 37 24@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.0252 kcal/mol@LB@Unfolding Energy - mRNA 2.04549 kcal/mol@LB@Unfolding Energy - sRNA 1.42738 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 25 -- 36@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 30 -- 36@LB@ |
76 |
0.002251 |
0.09621 |
b0020 |
nhaR |
-13.73 |
0.025158 |
90 -- 112 |
25 -- 46 |
transcriptional activator of nhaA |
|
_____________89______________________113\n_____________|_______________________|\n5'-AUC...UCUUC__C___AA____A__________UACGC...CUC-3'\n______________GG_GGU__UUGG_UACAGCUGGU\n______________||_|||__:|||_|||||||:|:\n______________CC_CCA__GACC_AUGUCGAUCG\n3'-UUU...UUCCU__A___AG_______________UAAAA...UCG-5'\n_____________|_______________________|\n_____________47______________________24\n |
106 -- 112 |
25 -- 31 |
-27.2836 kcal/mol |
8.99906 kcal/mol |
4.55673 kcal/mol |
89 113@LB@ | |@LB@5'-AUC...UCUUC C AA A UACGC...CUC-3'@LB@ GG GGU UUGG UACAGCUGGU@LB@ || ||| :||| |||||||:|:@LB@ CC CCA GACC AUGUCGAUCG@LB@3'-UUU...UUCCU A AG UAAAA...UCG-5'@LB@ | |@LB@ 47 24@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -27.2836 kcal/mol@LB@Unfolding Energy - mRNA 8.99906 kcal/mol@LB@Unfolding Energy - sRNA 4.55673 kcal/mol@LB@@LB@Position - mRNA 90 -- 112@LB@Position - sRNA 25 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 25 -- 31@LB@ |
96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |