148 |
0.007836 |
0.1845 |
stm2318 |
nuoL |
-12.84 |
0.254324 |
144 -- 178 |
37 -- 76 |
NADH-quinone oxidoreductase subunit L |
|
_____________143___________________179\n_____________|_____________________|\n5'-GGG...AGACC_____U____U__________UUCUC...UUG-3'\n______________GAUGG_CAGG___GAUGUACA\n______________||::|_||||___:|||||||\n______________CUGUC_GUCC___UUACAUGU\n3'-UUU...GAUAC_____U____CAU________CCUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________36\n |
82 -- 88 |
142 -- 148 |
-19.9967 kcal/mol |
7.20144 kcal/mol |
3.50251 kcal/mol |
143 179@LB@ | |@LB@5'-GGG...AGACC U U UUCUC...UUG-3'@LB@ GAUGG CAGG GAUGUACA@LB@ ||::| |||| :|||||||@LB@ CUGUC GUCC UUACAUGU@LB@3'-UUU...GAUAC U CAU CCUUC...UCA-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -19.9967 kcal/mol@LB@Unfolding Energy - mRNA 7.20144 kcal/mol@LB@Unfolding Energy - sRNA 3.50251 kcal/mol@LB@@LB@Position - mRNA 144 -- 178@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 142 -- 148@LB@ |
3 |
3.698e-05 |
0.04123 |
stm4398 |
cycA |
-21.36 |
0.010235 |
127 -- 178 |
38 -- 82 |
D-serine/D-alanine/glycine transporter |
|
_____________126_________________________________________________179\n_____________|___________________________________________________|\n5'-CGU...GCCCG___AAC__________________________________CAU_____A__AGGUA...UUG-3'\n______________CAC_____ACAGACAGG_______UACAGGAA__GAAAAA___GGUAG_UC\n______________|||_____|||||||||_______||||||||__||||||___|||||_||\n______________GUG_____UGUCUGUCC_______AUGUCCUU__CUUUUU___CCAUC_AG\n3'-UUU...AAUUA___AUACC_________CAUUUAC________CA______C__________AGCGA...UCA-5'\n_____________|___________________________________________________|\n_____________83__________________________________________________37\n |
187 -- 193 |
138 -- 144 |
-35.3631 kcal/mol |
4.42279 kcal/mol |
10.6404 kcal/mol |
126 179@LB@ | |@LB@5'-CGU...GCCCG AAC CAU A AGGUA...UUG-3'@LB@ CAC ACAGACAGG UACAGGAA GAAAAA GGUAG UC@LB@ ||| ||||||||| |||||||| |||||| ||||| ||@LB@ GUG UGUCUGUCC AUGUCCUU CUUUUU CCAUC AG@LB@3'-UUU...AAUUA AUACC CAUUUAC CA C AGCGA...UCA-5'@LB@ | |@LB@ 83 37@LB@@LB@@LB@Energy -21.36 kcal/mol@LB@Hybridization Energy -35.3631 kcal/mol@LB@Unfolding Energy - mRNA 4.42279 kcal/mol@LB@Unfolding Energy - sRNA 10.6404 kcal/mol@LB@@LB@Position - mRNA 127 -- 178@LB@Position - sRNA 38 -- 82@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 138 -- 144@LB@ |
22 |
0.0005859 |
0.08814 |
stm1976 |
fliM |
-14.91 |
0.122150 |
23 -- 60 |
38 -- 69 |
flagellar motor switch protein FliM |
|
_____________22_____________________________________61\n_____________|______________________________________|\n5'-AAA...AAGUG_________CU____UUGUUGUUUU_____________CGCCG...GCG-3'\n______________CGCAGCCGU__GCUG__________CCCGUCAGAAUGC\n______________|:||:||||__||::__________|||:||||||::|\n______________GUGUUGGCA__CGGU__________GGGUAGUCUUGUG\n3'-UUU...UUGUA_________UU____UUUC___________________CGUAA...UCA-5'\n_____________|______________________________________|\n_____________70_____________________________________37\n |
49 -- 55 |
43 -- 49 |
-35.5971 kcal/mol |
10.3893 kcal/mol |
19.1758 kcal/mol |
22 61@LB@ | |@LB@5'-AAA...AAGUG CU UUGUUGUUUU CGCCG...GCG-3'@LB@ CGCAGCCGU GCUG CCCGUCAGAAUGC@LB@ |:||:|||| ||:: |||:||||||::|@LB@ GUGUUGGCA CGGU GGGUAGUCUUGUG@LB@3'-UUU...UUGUA UU UUUC CGUAA...UCA-5'@LB@ | |@LB@ 70 37@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -35.5971 kcal/mol@LB@Unfolding Energy - mRNA 10.3893 kcal/mol@LB@Unfolding Energy - sRNA 19.1758 kcal/mol@LB@@LB@Position - mRNA 23 -- 60@LB@Position - sRNA 38 -- 69@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 43 -- 49@LB@ |
78 |
0.003685 |
0.1596 |
stm0423 |
ispA |
-20.49 |
0.014403 |
269 -- 289 |
38 -- 58 |
(2E 6E)-farnesyl diphosphate synthase |
|
_____________268____________________290\n_____________|______________________|\n5'-UGA...AUCGC____CU_____UU_________UCCCG...UCG-3'\n______________GCCA___GCCC__UCAGAACAC\n______________||||___||||__|||||||||\n______________CGGU___CGGG__AGUCUUGUG\n3'-UUU...GCAUU____UUU____U__________CGUAA...UCA-5'\n_____________|______________________|\n_____________59_____________________37\n |
281 -- 287 |
40 -- 46 |
-28.5082 kcal/mol |
2.40221 kcal/mol |
13.7699 kcal/mol |
268 290@LB@ | |@LB@5'-UGA...AUCGC CU UU UCCCG...UCG-3'@LB@ GCCA GCCC UCAGAACAC@LB@ |||| |||| |||||||||@LB@ CGGU CGGG AGUCUUGUG@LB@3'-UUU...GCAUU UUU U CGUAA...UCA-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -20.49 kcal/mol@LB@Hybridization Energy -28.5082 kcal/mol@LB@Unfolding Energy - mRNA 2.40221 kcal/mol@LB@Unfolding Energy - sRNA 13.7699 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 40 -- 46@LB@ |
109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
124 |
0.006123 |
0.1758 |
stm0794 |
bioB |
-18.46 |
0.031660 |
1 -- 37 |
38 -- 79 |
biotin synthase |
|
______________1________________38\n______________|________________|\n___________5'-_________________UUCGG...AGC-3'\n______________AAC_CAGC_UCGCAGCC\n______________|||_||:|_||:||:||\n______________UUG_GUUG_AGUGUUGG\n3'-UUU...UGUUG___U____U________CAUUC...UCA-5'\n_____________|_________________|\n_____________80________________37\n |
9 -- 15 |
63 -- 69 |
-17.7754 kcal/mol |
2.27351 kcal/mol |
6.48115 kcal/mol |
1 38@LB@ | |@LB@ 5'- UUCGG...AGC-3'@LB@ AAC CAGC UCGCAGCC@LB@ ||| ||:| ||:||:||@LB@ UUG GUUG AGUGUUGG@LB@3'-UUU...UGUUG U U CAUUC...UCA-5'@LB@ | |@LB@ 80 37@LB@@LB@@LB@Energy -18.46 kcal/mol@LB@Hybridization Energy -17.7754 kcal/mol@LB@Unfolding Energy - mRNA 2.27351 kcal/mol@LB@Unfolding Energy - sRNA 6.48115 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 38 -- 79@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 63 -- 69@LB@ |
132 |
0.006673 |
0.1774 |
stm2677 |
ffh |
-17.54 |
0.045291 |
232 -- 275 |
38 -- 86 |
4.5S-RNP protein |
|
_____________231_________________________________________________________________________________________________276\n_____________|___________________________________________________________________________________________________|\n5'-UAG...CAAAA_______UA__U_____CG____UU__CC__________A_A____A___A__G___UACG___C______CU____CC__U____________AA___GGCUU...AAG-3'\n______________ACGGGCA__GU__GUGU__ACAG__GA__AGUGAGAAAG_G_AG_C__GU_UA_CGU____UGA__CGCAG__CCAA__GU__GCAUAACAACA__GAC\n______________||:|:||__||__:|||__||||__||__|||||:||||_|_||_|__|:_||_|||____|||__|||||__||||__|:__:||:|||||||__:||\n______________UGUCUGU__CA__UACA__UGUC__CU__UCACUUUUUC_C_UC_G__CG_AU_GCA____ACU__GCGUC__GGUU__CG__UGUGUUGUUGU__UUG\n3'-UUU...AUACC_______CC__UU__________________________C_A__A_AG_____G___CCAG___UA_____U_____AA__UU___________G____UAGUG...UCA-5'\n_____________|___________________________________________________________________________________________________|\n_____________87__________________________________________________________________________________________________37\n |
110 -- 116 |
76 -- 82 |
-60.3799 kcal/mol |
23.7315 kcal/mol |
24.6218 kcal/mol |
231 276@LB@ | |@LB@5'-UAG...CAAAA UA U CG UU CC A A A A G UACG C CU CC U AA GGCUU...AAG-3'@LB@ ACGGGCA GU GUGU ACAG GA AGUGAGAAAG G AG C GU UA CGU UGA CGCAG CCAA GU GCAUAACAACA GAC@LB@ ||:|:|| || :||| |||| || |||||:|||| | || | |: || ||| ||| ||||| |||| |: :||:||||||| :||@LB@ UGUCUGU CA UACA UGUC CU UCACUUUUUC C UC G CG AU GCA ACU GCGUC GGUU CG UGUGUUGUUGU UUG@LB@3'-UUU...AUACC CC UU C A A AG G CCAG UA U AA UU G UAGUG...UCA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -60.3799 kcal/mol@LB@Unfolding Energy - mRNA 23.7315 kcal/mol@LB@Unfolding Energy - sRNA 24.6218 kcal/mol@LB@@LB@Position - mRNA 232 -- 275@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 76 -- 82@LB@ |
167 |
0.009062 |
0.1932 |
stm2673 |
rplS |
-14.99 |
0.118272 |
119 -- 180 |
38 -- 88 |
50S ribosomal protein L19 |
|
_____________118_________________181\n_____________|___________________|\n5'-GAU...GUUCA_____G____C________GCAGC...UUG-3'\n______________AAACA_AACA_GCACAACA\n______________|||||_||||_:|||||||\n______________UUUGU_UUGU_UGUGUUGU\n3'-UUU...UAACG_____G_____________AGUGU...UCA-5'\n_____________|___________________|\n_____________89__________________37\n |
126 -- 132 |
71 -- 77 |
-18.964 kcal/mol |
3.18358 kcal/mol |
3.68874 kcal/mol |
118 181@LB@ | |@LB@5'-GAU...GUUCA G C GCAGC...UUG-3'@LB@ AAACA AACA GCACAACA@LB@ ||||| |||| :|||||||@LB@ UUUGU UUGU UGUGUUGU@LB@3'-UUU...UAACG G AGUGU...UCA-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -18.964 kcal/mol@LB@Unfolding Energy - mRNA 3.18358 kcal/mol@LB@Unfolding Energy - sRNA 3.68874 kcal/mol@LB@@LB@Position - mRNA 119 -- 180@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 71 -- 77@LB@ |
184 |
0.01016 |
0.1966 |
stm1690 |
pspA |
-15.34 |
0.103900 |
116 -- 183 |
38 -- 113 |
phage shock protein PspA |
|
_____________115____________________________________________________184\n_____________|______________________________________________________|\n5'-GCC...UAUCA_____A____AAGU_G___C__A_______UUAAU__________G________CCGUU...UUC-3'\n______________GUGGU_UGAA____U_GCA_GC_AAUUGUA_____CAC_AUAGCA_GGCAUCGC\n______________|||||_||||____|_|||_:|_|||||:|_____|||_|:|:||_::||||:|\n______________CACCA_ACUU____A_CGU_UG_UUAACGU_____GUG_UGUUGU_UUGUAGUG\n3'-UUU...GAUGG_____G_________G___C__G_______UU______U______G________UUGGC...UCA-5'\n_____________|______________________________________________________|\n_____________114____________________________________________________37\n |
162 -- 168 |
67 -- 73 |
-39.4413 kcal/mol |
11.996 kcal/mol |
15.147 kcal/mol |
115 184@LB@ | |@LB@5'-GCC...UAUCA A AAGU G C A UUAAU G CCGUU...UUC-3'@LB@ GUGGU UGAA U GCA GC AAUUGUA CAC AUAGCA GGCAUCGC@LB@ ||||| |||| | ||| :| |||||:| ||| |:|:|| ::||||:|@LB@ CACCA ACUU A CGU UG UUAACGU GUG UGUUGU UUGUAGUG@LB@3'-UUU...GAUGG G G C G UU U G UUGGC...UCA-5'@LB@ | |@LB@ 114 37@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -39.4413 kcal/mol@LB@Unfolding Energy - mRNA 11.996 kcal/mol@LB@Unfolding Energy - sRNA 15.147 kcal/mol@LB@@LB@Position - mRNA 116 -- 183@LB@Position - sRNA 38 -- 113@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 67 -- 73@LB@ |
185 |
0.01043 |
0.1967 |
stm1700 |
fabI |
-13.03 |
0.238331 |
75 -- 107 |
38 -- 76 |
enoyl-[acyl-carrier-protein] reductase |
|
_____________74______________________________108\n_____________|_______________________________|\n5'-AGU...AGCGU____C______C___________________UAUAA...CUG-3'\n______________GACA_ACGGGG________CA_GGAGUGGGA\n______________||||_||:|||________||_|:||||::|\n______________CUGU_UGUCCC________GU_CUUCACUUU\n3'-UUU...GAUAC____C______AUUUACAU__C_________UUCCC...UCA-5'\n_____________|_______________________________|\n_____________77______________________________37\n |
96 -- 102 |
134 -- 140 |
-20.8604 kcal/mol |
6.05685 kcal/mol |
6.0649 kcal/mol |
74 108@LB@ | |@LB@5'-AGU...AGCGU C C UAUAA...CUG-3'@LB@ GACA ACGGGG CA GGAGUGGGA@LB@ |||| ||:||| || |:||||::|@LB@ CUGU UGUCCC GU CUUCACUUU@LB@3'-UUU...GAUAC C AUUUACAU C UUCCC...UCA-5'@LB@ | |@LB@ 77 37@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -20.8604 kcal/mol@LB@Unfolding Energy - mRNA 6.05685 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 75 -- 107@LB@Position - sRNA 38 -- 76@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 134 -- 140@LB@ |