78 |
0.004296 |
0.1855 |
b3258 |
panF |
-10.37 |
0.118507 |
142 -- 153 |
52 -- 62 |
pantothenate:sodium symporter |
|
_____________141__________154\n_____________|____________|\n5'-GGC...UUUAU___A________GGCGA...UUA-3'\n______________UGG_CUGUGCUG\n______________|||_|||:||:|\n______________ACC_GACGCGGC\n3'-UUU...UUAGA____________AUUUA...GUG-5'\n_____________|____________|\n_____________63___________51\n |
147 -- 153 |
52 -- 58 |
-17.1407 kcal/mol |
1.89201 kcal/mol |
4.8804 kcal/mol |
141 154@LB@ | |@LB@5'-GGC...UUUAU A GGCGA...UUA-3'@LB@ UGG CUGUGCUG@LB@ ||| |||:||:|@LB@ ACC GACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -17.1407 kcal/mol@LB@Unfolding Energy - mRNA 1.89201 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 52 -- 58@LB@ |
181 |
0.0108 |
0.2089 |
b1683 |
sufB |
-11.33 |
0.077347 |
153 -- 175 |
52 -- 74 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________152_______________________176\n_____________|_________________________|\n5'-GUU...AAAGC____AAU___UG__________G__AAAGC...AGC-3'\n______________CCAG___GAA____UGGCUGUG_CG\n______________||||___|||____||||||:|_||\n______________GGUC___CUU____ACCGACGC_GC\n3'-UUU...GUUGU____C_____UAGA________G__AUUUA...GUG-5'\n_____________|_________________________|\n_____________75________________________51\n |
166 -- 172 |
55 -- 61 |
-23.8546 kcal/mol |
3.76094 kcal/mol |
8.7601 kcal/mol |
152 176@LB@ | |@LB@5'-GUU...AAAGC AAU UG G AAAGC...AGC-3'@LB@ CCAG GAA UGGCUGUG CG@LB@ |||| ||| ||||||:| ||@LB@ GGUC CUU ACCGACGC GC@LB@3'-UUU...GUUGU C UAGA G AUUUA...GUG-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -23.8546 kcal/mol@LB@Unfolding Energy - mRNA 3.76094 kcal/mol@LB@Unfolding Energy - sRNA 8.7601 kcal/mol@LB@@LB@Position - mRNA 153 -- 175@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 55 -- 61@LB@ |
191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
166 |
0.009748 |
0.2068 |
b1261 |
trpB |
-12.89 |
0.038353 |
88 -- 97 |
52 -- 61 |
tryptophan synthase beta subunit |
|
_____________87_________98\n_____________|__________|\n5'-UGG...AAACC__________GACUU...UCA-3'\n______________GGCUGCGCCG\n______________||||||||||\n______________CCGACGCGGC\n3'-UUU...UAGAA__________AUUUA...GUG-5'\n_____________|__________|\n_____________62_________51\n |
91 -- 97 |
52 -- 58 |
-23.3299 kcal/mol |
5.56351 kcal/mol |
4.87533 kcal/mol |
87 98@LB@ | |@LB@5'-UGG...AAACC GACUU...UCA-3'@LB@ GGCUGCGCCG@LB@ ||||||||||@LB@ CCGACGCGGC@LB@3'-UUU...UAGAA AUUUA...GUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -23.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.56351 kcal/mol@LB@Unfolding Energy - sRNA 4.87533 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
49 |
0.00252 |
0.1727 |
b3452 |
ugpA |
-14.40 |
0.019328 |
59 -- 78 |
52 -- 70 |
sn-glycerol-3-phosphate ABC transporter permease |
|
_____________58___________________79\n_____________|____________________|\n5'-GAG...AGCGU_______AGUU_________CUUUG...CGG-3'\n______________GGAAAUC____GCUGCGCCG\n______________|||||||____|||||||||\n______________CCUUUAG____CGACGCGGC\n3'-UUU...UGGUC_______AAC__________AUUUA...GUG-5'\n_____________|____________________|\n_____________71___________________51\n |
72 -- 78 |
52 -- 58 |
-27.9409 kcal/mol |
6.69662 kcal/mol |
6.84683 kcal/mol |
58 79@LB@ | |@LB@5'-GAG...AGCGU AGUU CUUUG...CGG-3'@LB@ GGAAAUC GCUGCGCCG@LB@ ||||||| |||||||||@LB@ CCUUUAG CGACGCGGC@LB@3'-UUU...UGGUC AAC AUUUA...GUG-5'@LB@ | |@LB@ 71 51@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -27.9409 kcal/mol@LB@Unfolding Energy - mRNA 6.69662 kcal/mol@LB@Unfolding Energy - sRNA 6.84683 kcal/mol@LB@@LB@Position - mRNA 59 -- 78@LB@Position - sRNA 52 -- 70@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 52 -- 58@LB@ |
26 |
0.001553 |
0.1727 |
b0853 |
ybjN |
-8.94 |
0.217650 |
161 -- 169 |
52 -- 60 |
negative regulator of motility; multicopy suppressor of coaA(Ts) |
|
_____________160_______170\n_____________|_________|\n5'-CGC...CGUAA_________GUCUU...AUC-3'\n______________GCUGUGCCG\n______________||||:||||\n______________CGACGCGGC\n3'-UUU...AGAAC_________AUUUA...GUG-5'\n_____________|_________|\n_____________61________51\n |
163 -- 169 |
52 -- 58 |
-18.9448 kcal/mol |
5.13325 kcal/mol |
4.86882 kcal/mol |
160 170@LB@ | |@LB@5'-CGC...CGUAA GUCUU...AUC-3'@LB@ GCUGUGCCG@LB@ ||||:||||@LB@ CGACGCGGC@LB@3'-UUU...AGAAC AUUUA...GUG-5'@LB@ | |@LB@ 61 51@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -18.9448 kcal/mol@LB@Unfolding Energy - mRNA 5.13325 kcal/mol@LB@Unfolding Energy - sRNA 4.86882 kcal/mol@LB@@LB@Position - mRNA 161 -- 169@LB@Position - sRNA 52 -- 60@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
9 |
0.0003241 |
0.1198 |
b1110 |
ycfJ |
-9.50 |
0.172514 |
224 -- 251 |
52 -- 76 |
uncharacterized protein |
|
_____________223__________________________252\n_____________|____________________________|\n5'-ACU...GCGGG_______AUU__U___GCA_________GGCGU...AAU-3'\n______________UAUCGGG___GG_GUC___GCUGCGCUG\n______________:|:|:||___|:_:||___|||||||:|\n______________GUGGUCC___CU_UAG___CGACGCGGC\n3'-UUU...CGGUU____________U___AAC_________AUUUA...GUG-5'\n_____________|____________________________|\n_____________77___________________________51\n |
245 -- 251 |
52 -- 58 |
-26.6822 kcal/mol |
7.91875 kcal/mol |
9.26585 kcal/mol |
223 252@LB@ | |@LB@5'-ACU...GCGGG AUU U GCA GGCGU...AAU-3'@LB@ UAUCGGG GG GUC GCUGCGCUG@LB@ :|:|:|| |: :|| |||||||:|@LB@ GUGGUCC CU UAG CGACGCGGC@LB@3'-UUU...CGGUU U AAC AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -26.6822 kcal/mol@LB@Unfolding Energy - mRNA 7.91875 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 224 -- 251@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 52 -- 58@LB@ |
172 |
0.0102 |
0.2071 |
b1383 |
ydbL |
-9.96 |
0.141752 |
21 -- 31 |
52 -- 62 |
DUF1318 family protein |
|
_____________20__________32\n_____________|___________|\n5'-AAA...UUUAC___________ACGUC...UAG-3'\n______________UGGCUGCGUUG\n______________||||||||::|\n______________ACCGACGCGGC\n3'-UUU...UUAGA___________AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
25 -- 31 |
52 -- 58 |
-19.6889 kcal/mol |
4.85225 kcal/mol |
4.8804 kcal/mol |
20 32@LB@ | |@LB@5'-AAA...UUUAC ACGUC...UAG-3'@LB@ UGGCUGCGUUG@LB@ ||||||||::|@LB@ ACCGACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -19.6889 kcal/mol@LB@Unfolding Energy - mRNA 4.85225 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 21 -- 31@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 52 -- 58@LB@ |
80 |
0.004451 |
0.1855 |
b3578 |
yiaN |
-12.19 |
0.052777 |
198 -- 212 |
52 -- 66 |
2 3-diketo-L-gulonate TRAP transporter large permease protein |
|
_____________197_____________213\n_____________|_______________|\n5'-GGC...GCUUA___A___________AUUUU...UCU-3'\n______________AUC_UGGCUGUGCUG\n______________|||_||||||:||:|\n______________UAG_ACCGACGCGGC\n3'-UUU...CCCUU___A___________AUUUA...GUG-5'\n_____________|_______________|\n_____________67______________51\n |
206 -- 212 |
52 -- 58 |
-22.6247 kcal/mol |
3.67694 kcal/mol |
6.76246 kcal/mol |
197 213@LB@ | |@LB@5'-GGC...GCUUA A AUUUU...UCU-3'@LB@ AUC UGGCUGUGCUG@LB@ ||| ||||||:||:|@LB@ UAG ACCGACGCGGC@LB@3'-UUU...CCCUU A AUUUA...GUG-5'@LB@ | |@LB@ 67 51@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -22.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.67694 kcal/mol@LB@Unfolding Energy - sRNA 6.76246 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 52 -- 66@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 52 -- 58@LB@ |
171 |
0.01011 |
0.2071 |
b4086 |
alsC |
-10.38 |
0.118114 |
189 -- 207 |
53 -- 70 |
D-allose ABC transporter permease |
|
_____________188_________________208\n_____________|___________________|\n5'-CGC...GAAGA_______A____A__G___UUACC...CGA-3'\n______________GGAGAUU_UGGC_UG_GCU\n______________|||:||:_||||_||_||:\n______________CCUUUAG_ACCG_AC_CGG\n3'-UUU...UGGUC_______A_______G___CAUUU...GUG-5'\n_____________|___________________|\n_____________71__________________52\n |
189 -- 195 |
64 -- 70 |
-21.9341 kcal/mol |
4.72392 kcal/mol |
6.83419 kcal/mol |
188 208@LB@ | |@LB@5'-CGC...GAAGA A A G UUACC...CGA-3'@LB@ GGAGAUU UGGC UG GCU@LB@ |||:||: |||| || ||:@LB@ CCUUUAG ACCG AC CGG@LB@3'-UUU...UGGUC A G CAUUU...GUG-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -21.9341 kcal/mol@LB@Unfolding Energy - mRNA 4.72392 kcal/mol@LB@Unfolding Energy - sRNA 6.83419 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 64 -- 70@LB@ |