83 |
0.001985 |
0.08414 |
b1901 |
araF |
-10.36 |
0.035498 |
164 -- 171 |
1 -- 8 |
L-arabinose ABC transporter periplasmic binding protein |
|
_____________163______172\n_____________|________|\n5'-UCC...GUUUU________ACAAA...AGC-3'\n______________UGCCCUAC\n______________|:||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
165 -- 171 |
1 -- 7 |
-13.292 kcal/mol |
0.840759 kcal/mol |
2.11603 kcal/mol |
163 172@LB@ | |@LB@5'-UCC...GUUUU ACAAA...AGC-3'@LB@ UGCCCUAC@LB@ |:||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -13.292 kcal/mol@LB@Unfolding Energy - mRNA 0.840759 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 164 -- 171@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 1 -- 7@LB@ |
198 |
0.008802 |
0.1558 |
b1905 |
ftnA |
-8.07 |
0.149574 |
234 -- 260 |
3 -- 24 |
ferritin iron storage protein (cytoplasmic) |
|
_____________233_________________________261\n_____________|___________________________|\n5'-CAU...UUAAU_____GA_GA____GGAA_________UCACU...AUC-3'\n______________GAGCA__U__ACCU____CUGUACUCU\n______________||:||__|__||||____||||||:||\n______________CUUGU__A__UGGA____GACAUGGGA\n3'-AUU...UCUAU_____AG_A__________________UG-5'\n_____________|___________________________|\n_____________25__________________________2\n |
254 -- 260 |
3 -- 9 |
-20.546 kcal/mol |
4.48094 kcal/mol |
8.02061 kcal/mol |
233 261@LB@ | |@LB@5'-CAU...UUAAU GA GA GGAA UCACU...AUC-3'@LB@ GAGCA U ACCU CUGUACUCU@LB@ ||:|| | |||| ||||||:||@LB@ CUUGU A UGGA GACAUGGGA@LB@3'-AUU...UCUAU AG A UG-5'@LB@ | |@LB@ 25 2@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -20.546 kcal/mol@LB@Unfolding Energy - mRNA 4.48094 kcal/mol@LB@Unfolding Energy - sRNA 8.02061 kcal/mol@LB@@LB@Position - mRNA 234 -- 260@LB@Position - sRNA 3 -- 24@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 3 -- 9@LB@ |
71 |
0.001214 |
0.05856 |
b1921 |
fliZ |
-11.32 |
0.017729 |
260 -- 276 |
48 -- 65 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________259________________277\n_____________|__________________|\n5'-UGC...AAACA___________C______CGCAU...AUC-3'\n______________CAGCCAGA_CC_AUUGCG\n______________||||||:|_||_|||:||\n______________GUCGGUUU_GG_UAAUGC\n3'-AUU...UAUAA________A__C______ACUUC...AUG-5'\n_____________|__________________|\n_____________66_________________47\n |
261 -- 267 |
58 -- 64 |
-20.8295 kcal/mol |
2.05358 kcal/mol |
7.47467 kcal/mol |
259 277@LB@ | |@LB@5'-UGC...AAACA C CGCAU...AUC-3'@LB@ CAGCCAGA CC AUUGCG@LB@ ||||||:| || |||:||@LB@ GUCGGUUU GG UAAUGC@LB@3'-AUU...UAUAA A C ACUUC...AUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -20.8295 kcal/mol@LB@Unfolding Energy - mRNA 2.05358 kcal/mol@LB@Unfolding Energy - sRNA 7.47467 kcal/mol@LB@@LB@Position - mRNA 260 -- 276@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |
143 |
0.005218 |
0.1284 |
b1922 |
fliA |
-8.86 |
0.094137 |
133 -- 141 |
50 -- 58 |
RNA polymerase sigma 28 (sigma F) factor |
|
_____________132_______142\n_____________|_________|\n5'-AGG...UAAUC_________AAAAC...UUC-3'\n______________GUCCGAUUA\n______________:||||||||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
135 -- 141 |
50 -- 56 |
-11.3914 kcal/mol |
2.23267 kcal/mol |
0.317553 kcal/mol |
132 142@LB@ | |@LB@5'-AGG...UAAUC AAAAC...UUC-3'@LB@ GUCCGAUUA@LB@ :||||||||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -11.3914 kcal/mol@LB@Unfolding Energy - mRNA 2.23267 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 133 -- 141@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 50 -- 56@LB@ |
9 |
1.988e-05 |
0.007771 |
b1985 |
yeeO |
-11.51 |
0.015356 |
224 -- 255 |
1 -- 39 |
putative multdrug exporter MATE family |
|
_____________223_____________________________________256\n_____________|_______________________________________|\n5'-GAU...CAAUU______GGCUUU___________________________GCCAG...GCU-3'\n______________AAGGUC_________GAAUAUCU__CCUCUG__CUUUAC\n______________||||||_________|||:||||__||||||__|::|||\n______________UUCCAG_________CUUGUAGA__GGAGAC__GGGAUG\n3'-AUU...UCAUU______ACUUUCUAU________AU______AU______-5'\n_____________|______________________________________|\n_____________40_____________________________________1\n |
237 -- 243 |
17 -- 23 |
-28.0657 kcal/mol |
5.21805 kcal/mol |
11.3576 kcal/mol |
223 256@LB@ | |@LB@5'-GAU...CAAUU GGCUUU GCCAG...GCU-3'@LB@ AAGGUC GAAUAUCU CCUCUG CUUUAC@LB@ |||||| |||:|||| |||||| |::|||@LB@ UUCCAG CUUGUAGA GGAGAC GGGAUG@LB@3'-AUU...UCAUU ACUUUCUAU AU AU -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -28.0657 kcal/mol@LB@Unfolding Energy - mRNA 5.21805 kcal/mol@LB@Unfolding Energy - sRNA 11.3576 kcal/mol@LB@@LB@Position - mRNA 224 -- 255@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 17 -- 23@LB@ |
186 |
0.008252 |
0.1556 |
b2026 |
hisI |
-8.65 |
0.106637 |
17 -- 26 |
42 -- 51 |
phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase |
|
_____________16_________27\n_____________|__________|\n5'-GAA...AAAAG__________UUGCC...UGC-3'\n______________UGCGUGAAGU\n______________|:||||||||\n______________AUGCACUUCA\n3'-AUU...GGCUA__________UUUUC...AUG-5'\n_____________|__________|\n_____________52_________41\n |
20 -- 26 |
42 -- 48 |
-13.8545 kcal/mol |
1.95631 kcal/mol |
3.26026 kcal/mol |
16 27@LB@ | |@LB@5'-GAA...AAAAG UUGCC...UGC-3'@LB@ UGCGUGAAGU@LB@ |:||||||||@LB@ AUGCACUUCA@LB@3'-AUU...GGCUA UUUUC...AUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -13.8545 kcal/mol@LB@Unfolding Energy - mRNA 1.95631 kcal/mol@LB@Unfolding Energy - sRNA 3.26026 kcal/mol@LB@@LB@Position - mRNA 17 -- 26@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 42 -- 48@LB@ |
84 |
0.002084 |
0.08729 |
b2067 |
yegE |
-5.99 |
0.414041 |
137 -- 150 |
1 -- 15 |
putative diguanylate cyclase |
|
_____________136_____________151\n_____________|_______________|\n5'-AGU...GUAAA___________A___AUAAA...CGC-3'\n______________ACUUUUGUACU__GC\n______________||:|:|||||:__:|\n______________UGGAGACAUGG__UG\n3'-AUU...UAGAA___________GA__-5'\n_____________|______________|\n_____________16_____________1\n |
141 -- 147 |
5 -- 11 |
-13.6769 kcal/mol |
1.88278 kcal/mol |
5.82808 kcal/mol |
136 151@LB@ | |@LB@5'-AGU...GUAAA A AUAAA...CGC-3'@LB@ ACUUUUGUACU GC@LB@ ||:|:|||||: :|@LB@ UGGAGACAUGG UG@LB@3'-AUU...UAGAA GA -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -13.6769 kcal/mol@LB@Unfolding Energy - mRNA 1.88278 kcal/mol@LB@Unfolding Energy - sRNA 5.82808 kcal/mol@LB@@LB@Position - mRNA 137 -- 150@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 5 -- 11@LB@ |
131 |
0.004483 |
0.1204 |
b2069 |
yegD |
-6.32 |
0.360285 |
213 -- 222 |
48 -- 57 |
Hsp70 chaperone family protein |
|
_____________212________223\n_____________|__________|\n5'-CAC...UUGGU__________GUACA...UGC-3'\n______________UUUGAUUACG\n______________|::|||||||\n______________AGGCUAAUGC\n3'-AUU...GGUUU__________ACUUC...AUG-5'\n_____________|__________|\n_____________58_________47\n |
216 -- 222 |
48 -- 54 |
-10.2333 kcal/mol |
2.33693 kcal/mol |
1.55976 kcal/mol |
212 223@LB@ | |@LB@5'-CAC...UUGGU GUACA...UGC-3'@LB@ UUUGAUUACG@LB@ |::|||||||@LB@ AGGCUAAUGC@LB@3'-AUU...GGUUU ACUUC...AUG-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -10.2333 kcal/mol@LB@Unfolding Energy - mRNA 2.33693 kcal/mol@LB@Unfolding Energy - sRNA 1.55976 kcal/mol@LB@@LB@Position - mRNA 213 -- 222@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 48 -- 54@LB@ |
11 |
3.674e-05 |
0.01134 |
b2099 |
yegU |
-10.44 |
0.033453 |
166 -- 229 |
3 -- 59 |
ADP-ribosylglycohydrolase family protein |
|
_____________165_________________________________________________________________230\n_____________|___________________________________________________________________|\n5'-GUG...UCGAU____G____AU____U___CAC______AAGUUAAA_____AC________AU______G_______UUAUG...CAC-3'\n______________GAUC_CGAU__UGCG_UGA___AAGGGG________UGAAA___AGAACGU____UCUC_GUGCUCU\n______________:|||_||||__|:||_|||___||::||________|||||___|||||:|____:|||_||:|:||\n______________UUAG_GCUA__AUGC_ACU___UUUUCC________ACUUU___UCUUGUA____GGAG_CAUGGGA\n3'-AUU...UCGGU___________________UCA______AG___________CUA_______GAAU____A_______UG-5'\n_____________|___________________________________________________________________|\n_____________60__________________________________________________________________2\n |
223 -- 229 |
3 -- 9 |
-36.2809 kcal/mol |
13.1575 kcal/mol |
12.7026 kcal/mol |
165 230@LB@ | |@LB@5'-GUG...UCGAU G AU U CAC AAGUUAAA AC AU G UUAUG...CAC-3'@LB@ GAUC CGAU UGCG UGA AAGGGG UGAAA AGAACGU UCUC GUGCUCU@LB@ :||| |||| |:|| ||| ||::|| ||||| |||||:| :||| ||:|:||@LB@ UUAG GCUA AUGC ACU UUUUCC ACUUU UCUUGUA GGAG CAUGGGA@LB@3'-AUU...UCGGU UCA AG CUA GAAU A UG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -36.2809 kcal/mol@LB@Unfolding Energy - mRNA 13.1575 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 166 -- 229@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 3 -- 9@LB@ |
58 |
0.000878 |
0.0531 |
b2150 |
mglB |
-10.24 |
0.038484 |
153 -- 179 |
1 -- 24 |
methyl-galactoside transporter subunit |
|
_____________152__________________________180\n_____________|____________________________|\n5'-GUA...CCGCC______________AAGCAC________AUAAG...AUA-3'\n______________GAGCAUU_UAUCUC______UACCCUGC\n______________||:|||:_||:|||______||||||:|\n______________CUUGUAG_AUGGAG______AUGGGAUG\n3'-AUU...UCUAU_______A______AC____________-5'\n_____________|___________________________|\n_____________25__________________________1\n |
173 -- 179 |
1 -- 7 |
-24.5136 kcal/mol |
6.27388 kcal/mol |
8.02158 kcal/mol |
152 180@LB@ | |@LB@5'-GUA...CCGCC AAGCAC AUAAG...AUA-3'@LB@ GAGCAUU UAUCUC UACCCUGC@LB@ ||:|||: ||:||| ||||||:|@LB@ CUUGUAG AUGGAG AUGGGAUG@LB@3'-AUU...UCUAU A AC -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -24.5136 kcal/mol@LB@Unfolding Energy - mRNA 6.27388 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 153 -- 179@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |