79 |
0.006804 |
0.2822 |
b2947 |
gshB |
-11.48 |
0.058268 |
213 -- 229 |
39 -- 54 |
glutathione synthetase |
|
_____________212_______________230\n_____________|_________________|\n5'-UGC...AGCUC____UC_______A___CAUCG...ACG-3'\n______________GGCA__GUGAUGG_CCC\n______________||||__|::||||_|||\n______________CCGU__CGUUACC_GGG\n3'-UUU...AGUCA____UA___________UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
219 -- 225 |
42 -- 48 |
-21.2333 kcal/mol |
4.99211 kcal/mol |
4.76022 kcal/mol |
212 230@LB@ | |@LB@5'-UGC...AGCUC UC A CAUCG...ACG-3'@LB@ GGCA GUGAUGG CCC@LB@ |||| |::|||| |||@LB@ CCGU CGUUACC GGG@LB@3'-UUU...AGUCA UA UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -21.2333 kcal/mol@LB@Unfolding Energy - mRNA 4.99211 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 42 -- 48@LB@ |
75 |
0.006388 |
0.2822 |
b2813 |
mltA |
-10.80 |
0.082551 |
232 -- 252 |
47 -- 66 |
membrane-bound lytic murein transglycosylase A |
|
_____________231____________________253\n_____________|______________________|\n5'-UGC...UCUUA____CAC_______________UUGCC...AAG-3'\n______________UGGG___GGUU_GUGGCAAUGC\n______________|||:___::|:_||||||||||\n______________ACCU___UUAG_CACCGUUACG\n3'-UUU...AUACA____U______U__________UUACC...UUG-5'\n_____________|______________________|\n_____________67_____________________46\n |
246 -- 252 |
47 -- 53 |
-21.5988 kcal/mol |
6.72365 kcal/mol |
4.0775 kcal/mol |
231 253@LB@ | |@LB@5'-UGC...UCUUA CAC UUGCC...AAG-3'@LB@ UGGG GGUU GUGGCAAUGC@LB@ |||: ::|: ||||||||||@LB@ ACCU UUAG CACCGUUACG@LB@3'-UUU...AUACA U U UUACC...UUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -21.5988 kcal/mol@LB@Unfolding Energy - mRNA 6.72365 kcal/mol@LB@Unfolding Energy - sRNA 4.0775 kcal/mol@LB@@LB@Position - mRNA 232 -- 252@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 47 -- 53@LB@ |
81 |
0.006985 |
0.2822 |
b0333 |
prpC |
-14.20 |
0.012743 |
251 -- 274 |
6 -- 28 |
2-methylcitrate synthase |
|
_____________250______________________275\n_____________|________________________|\n5'-ACU...CCGAA_____________CUUUCU_____UCCGG...GCA-3'\n______________AAAAUCUGUGGCA______GGCGU\n______________||||||||||:||______|||:|\n______________UUUUAGACACUGU______CCGUA\n3'-UUU...UUUUA_____________UAUUU______UAUUG-5'\n_____________|________________________|\n_____________29_______________________5\n |
257 -- 263 |
16 -- 22 |
-23.1913 kcal/mol |
4.0983 kcal/mol |
4.89176 kcal/mol |
250 275@LB@ | |@LB@5'-ACU...CCGAA CUUUCU UCCGG...GCA-3'@LB@ AAAAUCUGUGGCA GGCGU@LB@ ||||||||||:|| |||:|@LB@ UUUUAGACACUGU CCGUA@LB@3'-UUU...UUUUA UAUUU UAUUG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -23.1913 kcal/mol@LB@Unfolding Energy - mRNA 4.0983 kcal/mol@LB@Unfolding Energy - sRNA 4.89176 kcal/mol@LB@@LB@Position - mRNA 251 -- 274@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 16 -- 22@LB@ |
80 |
0.006956 |
0.2822 |
b1914 |
uvrY |
-9.02 |
0.189987 |
260 -- 281 |
5 -- 24 |
response regulator in two-component regulatory system with BarA |
|
_____________259____________________282\n_____________|______________________|\n5'-UUC...CGCAU____GAA____UA_________AAAGU...CAU-3'\n______________UCUG___GAUA__AAGGGUAUA\n______________||||___||:|__||:||:|||\n______________AGAC___CUGU__UUUCCGUAU\n3'-UUU...AUUUU____A______UA_________AUUG-5'\n_____________|______________________|\n_____________25_____________________4\n |
275 -- 281 |
5 -- 11 |
-15.9126 kcal/mol |
2.27135 kcal/mol |
4.61703 kcal/mol |
259 282@LB@ | |@LB@5'-UUC...CGCAU GAA UA AAAGU...CAU-3'@LB@ UCUG GAUA AAGGGUAUA@LB@ |||| ||:| ||:||:|||@LB@ AGAC CUGU UUUCCGUAU@LB@3'-UUU...AUUUU A UA AUUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.9126 kcal/mol@LB@Unfolding Energy - mRNA 2.27135 kcal/mol@LB@Unfolding Energy - sRNA 4.61703 kcal/mol@LB@@LB@Position - mRNA 260 -- 281@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 5 -- 11@LB@ |
85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
86 |
0.007534 |
0.2889 |
b0189 |
rof |
-5.95 |
0.582576 |
103 -- 121 |
40 -- 57 |
modulator of Rho-dependent transcription termination |
|
_____________102_________________122\n_____________|___________________|\n5'-AGG...UUGAA____CUG____A_______GCCGA...GCG-3'\n______________AGUG___AAUG_AAUGGCU\n______________||||___||||_||||||:\n______________UCAC___UUAC_UUACCGG\n3'-UUU...UUUAG____CG_____G_______GUUGU...UUG-5'\n_____________|___________________|\n_____________58__________________39\n |
115 -- 121 |
40 -- 46 |
-14.9441 kcal/mol |
3.94739 kcal/mol |
5.04912 kcal/mol |
102 122@LB@ | |@LB@5'-AGG...UUGAA CUG A GCCGA...GCG-3'@LB@ AGUG AAUG AAUGGCU@LB@ |||| |||| ||||||:@LB@ UCAC UUAC UUACCGG@LB@3'-UUU...UUUAG CG G GUUGU...UUG-5'@LB@ | |@LB@ 58 39@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -14.9441 kcal/mol@LB@Unfolding Energy - mRNA 3.94739 kcal/mol@LB@Unfolding Energy - sRNA 5.04912 kcal/mol@LB@@LB@Position - mRNA 103 -- 121@LB@Position - sRNA 40 -- 57@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 40 -- 46@LB@ |
87 |
0.007653 |
0.2889 |
b1881 |
cheZ |
-13.56 |
0.018568 |
164 -- 190 |
2 -- 28 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________163_________________________191\n_____________|___________________________|\n5'-AUU...UCAAC_______U___G__ACU__________GGAUG...GGG-3'\n______________AAAAUCU_UGA_AA___GGGCAUGUGA\n______________|||||||_|||_||___:|||||:|:|\n______________UUUUAGA_ACU_UU___UCCGUAUAUU\n3'-UUU...UUUUA_______C___G__AUU__________G-5'\n_____________|___________________________|\n_____________29__________________________1\n |
183 -- 189 |
3 -- 9 |
-22.696 kcal/mol |
4.24203 kcal/mol |
4.89261 kcal/mol |
163 191@LB@ | |@LB@5'-AUU...UCAAC U G ACU GGAUG...GGG-3'@LB@ AAAAUCU UGA AA GGGCAUGUGA@LB@ ||||||| ||| || :|||||:|:|@LB@ UUUUAGA ACU UU UCCGUAUAUU@LB@3'-UUU...UUUUA C G AUU G-5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -22.696 kcal/mol@LB@Unfolding Energy - mRNA 4.24203 kcal/mol@LB@Unfolding Energy - sRNA 4.89261 kcal/mol@LB@@LB@Position - mRNA 164 -- 190@LB@Position - sRNA 2 -- 28@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 3 -- 9@LB@ |
91 |
0.007817 |
0.2889 |
b3380 |
yhfW |
-10.82 |
0.081759 |
179 -- 205 |
41 -- 67 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________178_________________________206\n_____________|___________________________|\n5'-CUC...CAGUC_______C__UC___G__C________GCGAU...GUG-3'\n______________UUGGAAA_UC__UGG_GG_GUAAUGGC\n______________|||||||_||__|||_::_|:||||||\n______________AACCUUU_AG__ACC_UU_CGUUACCG\n3'-UUU...UAUAC_______U__UC___G__A________GGUUG...UUG-5'\n_____________|___________________________|\n_____________68__________________________40\n |
199 -- 205 |
41 -- 47 |
-26.7792 kcal/mol |
10.1319 kcal/mol |
5.83043 kcal/mol |
178 206@LB@ | |@LB@5'-CUC...CAGUC C UC G C GCGAU...GUG-3'@LB@ UUGGAAA UC UGG GG GUAAUGGC@LB@ ||||||| || ||| :: |:||||||@LB@ AACCUUU AG ACC UU CGUUACCG@LB@3'-UUU...UAUAC U UC G A GGUUG...UUG-5'@LB@ | |@LB@ 68 40@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -26.7792 kcal/mol@LB@Unfolding Energy - mRNA 10.1319 kcal/mol@LB@Unfolding Energy - sRNA 5.83043 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 41 -- 67@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
89 |
0.007733 |
0.2889 |
b3426 |
glpD |
-8.48 |
0.239884 |
186 -- 234 |
7 -- 64 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________185__________________________________________________________235\n_____________|____________________________________________________________|\n5'-AAC...CGAAA_U____G________________AAA________UCU_______________________GCAUC...AGG-3'\n______________G_GAAU_AG_GGCA__GC_AUGG___CCAA_AGA______GA_UUGUGAUAG__GGGGCG\n______________|_:|||_||_||||__||_||||___||||_|||______:|_:|||||:|:__::|||:\n______________C_UUUA_UC_CCGU__CG_UACC___GGUU_UCU______UU_GACACUGUU__UUCCGU\n3'-UUU...ACAAC_U____G__A____UA__U____G______G___UUUAUU__A_________AU______AUAUUG-5'\n_____________|____________________________________________________________|\n_____________65___________________________________________________________6\n |
222 -- 228 |
15 -- 21 |
-34.508 kcal/mol |
13.8761 kcal/mol |
12.1536 kcal/mol |
185 235@LB@ | |@LB@5'-AAC...CGAAA U G AAA UCU GCAUC...AGG-3'@LB@ G GAAU AG GGCA GC AUGG CCAA AGA GA UUGUGAUAG GGGGCG@LB@ | :||| || |||| || |||| |||| ||| :| :|||||:|: ::|||:@LB@ C UUUA UC CCGU CG UACC GGUU UCU UU GACACUGUU UUCCGU@LB@3'-UUU...ACAAC U G A UA U G G UUUAUU A AU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -34.508 kcal/mol@LB@Unfolding Energy - mRNA 13.8761 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 186 -- 234@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 15 -- 21@LB@ |
90 |
0.007755 |
0.2889 |
b1852 |
zwf |
-12.23 |
0.039232 |
191 -- 223 |
38 -- 65 |
glucose-6-phosphate 1-dehydrogenase |
|
_____________190_______________________________224\n_____________|_________________________________|\n5'-UCA...CUUAA_______G_CA_______AAC____ACA_____GGCCU...UGG-3'\n______________GGAGAAU_A__UGGCGGU___GCAA___GCCCA\n______________|||:|||_|__||||::|___||||___|||||\n______________CCUUUUA_U__ACCGUUA___CGUU___CGGGU\n3'-UUU...UACAA_______G_C_______________AC______UGUCU...UUG-5'\n_____________|_________________________________|\n_____________66________________________________37\n |
202 -- 208 |
49 -- 55 |
-27.1425 kcal/mol |
8.24293 kcal/mol |
6.67322 kcal/mol |
190 224@LB@ | |@LB@5'-UCA...CUUAA G CA AAC ACA GGCCU...UGG-3'@LB@ GGAGAAU A UGGCGGU GCAA GCCCA@LB@ |||:||| | ||||::| |||| |||||@LB@ CCUUUUA U ACCGUUA CGUU CGGGU@LB@3'-UUU...UACAA G C AC UGUCU...UUG-5'@LB@ | |@LB@ 66 37@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -27.1425 kcal/mol@LB@Unfolding Energy - mRNA 8.24293 kcal/mol@LB@Unfolding Energy - sRNA 6.67322 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 38 -- 65@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |