80 |
0.005376 |
0.2146 |
b1520 |
yneE |
-6.66 |
0.134465 |
278 -- 284 |
34 -- 40 |
bestrophin family putative inner membrane protein |
|
_____________277_____285\n_____________|_______|\n5'-CGU...UCCUC_______CUACU...UCU-3'\n______________GCGCUUA\n______________||:||||\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
278 -- 284 |
34 -- 40 |
-8.65652 kcal/mol |
0.386276 kcal/mol |
1.61352 kcal/mol |
277 285@LB@ | |@LB@5'-CGU...UCCUC CUACU...UCU-3'@LB@ GCGCUUA@LB@ ||:||||@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -6.66 kcal/mol@LB@Hybridization Energy -8.65652 kcal/mol@LB@Unfolding Energy - mRNA 0.386276 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 278 -- 284@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 34 -- 40@LB@ |
82 |
0.005534 |
0.2146 |
b1342 |
ydaN |
-6.57 |
0.141434 |
180 -- 206 |
30 -- 54 |
putative Zn(II) transporter |
|
_____________179_________________________207\n_____________|___________________________|\n5'-CGU...AAUAA___G____U_AU_________GU____GCGAU...AUG-3'\n______________UGC_UUGA_G__GGAGGCACU__GGAA\n______________|||_||:|_|__:||:|||||__::||\n______________ACG_AAUU_C__UCUUCGUGA__UUUU\n3'-UUU...UUUGA__________GU_________AU____UAAGC...CAA-5'\n_____________|___________________________|\n_____________55__________________________29\n |
194 -- 200 |
36 -- 42 |
-19.056 kcal/mol |
6.29262 kcal/mol |
6.19579 kcal/mol |
179 207@LB@ | |@LB@5'-CGU...AAUAA G U AU GU GCGAU...AUG-3'@LB@ UGC UUGA G GGAGGCACU GGAA@LB@ ||| ||:| | :||:||||| ::||@LB@ ACG AAUU C UCUUCGUGA UUUU@LB@3'-UUU...UUUGA GU AU UAAGC...CAA-5'@LB@ | |@LB@ 55 29@LB@@LB@@LB@Energy -6.57 kcal/mol@LB@Hybridization Energy -19.056 kcal/mol@LB@Unfolding Energy - mRNA 6.29262 kcal/mol@LB@Unfolding Energy - sRNA 6.19579 kcal/mol@LB@@LB@Position - mRNA 180 -- 206@LB@Position - sRNA 30 -- 54@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 36 -- 42@LB@ |
84 |
0.005596 |
0.2146 |
b4065 |
yjcE |
-5.39 |
0.265673 |
197 -- 210 |
9 -- 22 |
putative cation/proton antiporter |
|
_____________196____________211\n_____________|______________|\n5'-UAU...AGGGA____AU________UCUUC...UGC-3'\n______________ACGC__GGAAAUCU\n______________||:|__||||||||\n______________UGUG__CCUUUAGA\n3'-UUU...AGCAA____GU________CUACACAA-5'\n_____________|______________|\n_____________23_____________8\n |
203 -- 209 |
10 -- 16 |
-15.8377 kcal/mol |
2.89158 kcal/mol |
7.5588 kcal/mol |
196 211@LB@ | |@LB@5'-UAU...AGGGA AU UCUUC...UGC-3'@LB@ ACGC GGAAAUCU@LB@ ||:| ||||||||@LB@ UGUG CCUUUAGA@LB@3'-UUU...AGCAA GU CUACACAA-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.8377 kcal/mol@LB@Unfolding Energy - mRNA 2.89158 kcal/mol@LB@Unfolding Energy - sRNA 7.5588 kcal/mol@LB@@LB@Position - mRNA 197 -- 210@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 10 -- 16@LB@ |
81 |
0.005437 |
0.2146 |
b1073 |
flgB |
-5.23 |
0.286610 |
229 -- 247 |
36 -- 53 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________228_________________248\n_____________|___________________|\n5'-UGA...CUUAC____UCAA___________CAAUC...CCG-3'\n______________GUUU____CAAGAGGCGCU\n______________|:||____|||||:||:||\n______________CGAA____GUUCUUCGUGA\n3'-UUU...UUGAA____UUC____________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
241 -- 247 |
36 -- 42 |
-18.0666 kcal/mol |
6.73003 kcal/mol |
6.10238 kcal/mol |
228 248@LB@ | |@LB@5'-UGA...CUUAC UCAA CAAUC...CCG-3'@LB@ GUUU CAAGAGGCGCU@LB@ |:|| |||||:||:||@LB@ CGAA GUUCUUCGUGA@LB@3'-UUU...UUGAA UUC AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -5.23 kcal/mol@LB@Hybridization Energy -18.0666 kcal/mol@LB@Unfolding Energy - mRNA 6.73003 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 229 -- 247@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 36 -- 42@LB@ |
85 |
0.005692 |
0.2157 |
b4052 |
dnaB |
-8.38 |
0.047402 |
89 -- 103 |
26 -- 40 |
replicative DNA helicase |
|
_____________88______________104\n_____________|_______________|\n5'-UGC...CCACC_______U_______AAUUC...CGG-3'\n______________GUGCUUG_GAAAUUC\n______________|::|||:_:||||||\n______________CGUGAAU_UUUUAAG\n3'-UUU...UUCUU_______U_______CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
97 -- 103 |
26 -- 32 |
-13.045 kcal/mol |
3.01413 kcal/mol |
1.64811 kcal/mol |
88 104@LB@ | |@LB@5'-UGC...CCACC U AAUUC...CGG-3'@LB@ GUGCUUG GAAAUUC@LB@ |::|||: :||||||@LB@ CGUGAAU UUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -13.045 kcal/mol@LB@Unfolding Energy - mRNA 3.01413 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 89 -- 103@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 26 -- 32@LB@ |
86 |
0.005829 |
0.217 |
b2399 |
yfeD |
-9.44 |
0.023742 |
136 -- 182 |
13 -- 56 |
DUF1323 family putative DNA-binding protein |
|
_____________135______________________________________________183\n_____________|________________________________________________|\n5'-UGA...ACAUC_______CU________G_A___UC____________ACGC_______UUCGC...GGA-3'\n______________CUUGCUU__GCGGGAAG_G_UUA__GGAUU_GUUACA____UUAGGGA\n______________|||||||__||::||||_:_|||__::|||_||||||____::|||:|\n______________GAACGAA__CGUUCUUC_U_AAU__UUUAA_CAAUGU____GGUCCUU\n3'-UUU...ACUUU_______UU________G_G___UU_____G_________________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________12\n |
146 -- 152 |
40 -- 46 |
-35.8501 kcal/mol |
12.5789 kcal/mol |
13.8302 kcal/mol |
135 183@LB@ | |@LB@5'-UGA...ACAUC CU G A UC ACGC UUCGC...GGA-3'@LB@ CUUGCUU GCGGGAAG G UUA GGAUU GUUACA UUAGGGA@LB@ ||||||| ||::|||| : ||| ::||| |||||| ::|||:|@LB@ GAACGAA CGUUCUUC U AAU UUUAA CAAUGU GGUCCUU@LB@3'-UUU...ACUUU UU G G UU G UAGAC...CAA-5'@LB@ | |@LB@ 57 12@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -35.8501 kcal/mol@LB@Unfolding Energy - mRNA 12.5789 kcal/mol@LB@Unfolding Energy - sRNA 13.8302 kcal/mol@LB@@LB@Position - mRNA 136 -- 182@LB@Position - sRNA 13 -- 56@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 40 -- 46@LB@ |
87 |
0.005861 |
0.217 |
b3083 |
higB |
-4.01 |
0.492619 |
220 -- 233 |
28 -- 42 |
mRNA interferase toxin of the HigB-HigA toxin-antitoxin system |
|
_____________219_____________234\n_____________|_______________|\n5'-GCA...UCAAA_______________GCUGC...GAU-3'\n______________AAGCAUU_GAAAGAU\n______________|||||:|_:|||:||\n______________UUCGUGA_UUUUUUA\n3'-UUU...CGUUC_______A_______AGCAA...CAA-5'\n_____________|_______________|\n_____________43______________27\n |
220 -- 226 |
36 -- 42 |
-9.16043 kcal/mol |
3.51035 kcal/mol |
1.63711 kcal/mol |
219 234@LB@ | |@LB@5'-GCA...UCAAA GCUGC...GAU-3'@LB@ AAGCAUU GAAAGAU@LB@ |||||:| :|||:||@LB@ UUCGUGA UUUUUUA@LB@3'-UUU...CGUUC A AGCAA...CAA-5'@LB@ | |@LB@ 43 27@LB@@LB@@LB@Energy -4.01 kcal/mol@LB@Hybridization Energy -9.16043 kcal/mol@LB@Unfolding Energy - mRNA 3.51035 kcal/mol@LB@Unfolding Energy - sRNA 1.63711 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 28 -- 42@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 36 -- 42@LB@ |
88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
90 |
0.006331 |
0.2266 |
b1710 |
btuE |
-7.57 |
0.078405 |
256 -- 270 |
25 -- 39 |
glutathione peroxidase |
|
_____________255_____________271\n_____________|_______________|\n5'-GCA...GACCA____G__________CCGGU...UCG-3'\n______________CGCU_GAGAAGUUCG\n______________|:||_:|:||:||||\n______________GUGA_UUUUUUAAGC\n3'-UUU...UCUUC____A__________AAUGU...CAA-5'\n_____________|_______________|\n_____________40______________24\n |
264 -- 270 |
25 -- 31 |
-13.949 kcal/mol |
4.72897 kcal/mol |
1.64678 kcal/mol |
255 271@LB@ | |@LB@5'-GCA...GACCA G CCGGU...UCG-3'@LB@ CGCU GAGAAGUUCG@LB@ |:|| :|:||:||||@LB@ GUGA UUUUUUAAGC@LB@3'-UUU...UCUUC A AAUGU...CAA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -13.949 kcal/mol@LB@Unfolding Energy - mRNA 4.72897 kcal/mol@LB@Unfolding Energy - sRNA 1.64678 kcal/mol@LB@@LB@Position - mRNA 256 -- 270@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 25 -- 31@LB@ |
89 |
0.006302 |
0.2266 |
b3208 |
mtgA |
-4.90 |
0.336213 |
28 -- 47 |
28 -- 47 |
biosynthetic peptidoglycan transglycosylase |
|
_____________27____________________48\n_____________|_____________________|\n5'-UUG...AUACC____________GG_______GGGCG...UGU-3'\n______________GC_AGAAGUGCU__AAGAGAU\n______________||_|||||::||__||:|:||\n______________CG_UCUUCGUGA__UUUUUUA\n3'-UUU...GAAUU__U_________A________AGCAA...CAA-5'\n_____________|_____________________|\n_____________48____________________27\n |
32 -- 38 |
36 -- 42 |
-15.6239 kcal/mol |
4.50128 kcal/mol |
6.22212 kcal/mol |
27 48@LB@ | |@LB@5'-UUG...AUACC GG GGGCG...UGU-3'@LB@ GC AGAAGUGCU AAGAGAU@LB@ || |||||::|| ||:|:||@LB@ CG UCUUCGUGA UUUUUUA@LB@3'-UUU...GAAUU U A AGCAA...CAA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -4.90 kcal/mol@LB@Hybridization Energy -15.6239 kcal/mol@LB@Unfolding Energy - mRNA 4.50128 kcal/mol@LB@Unfolding Energy - sRNA 6.22212 kcal/mol@LB@@LB@Position - mRNA 28 -- 47@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 36 -- 42@LB@ |