170 |
0.01687 |
0.3104 |
b0033 |
carB |
-11.35 |
0.071227 |
1 -- 15 |
5 -- 17 |
carbamoyl-phosphate synthase large subunit |
|
______________1______________16\n______________|______________|\n___________5'-_____CC________ACGCA...CGU-3'\n______________GCAAA__UGCGUGUC\n______________:||||__||||:|||\n______________UGUUU__ACGCGCAG\n3'-UUU...ACUAU_______________AAAG-5'\n_____________|_______________|\n_____________18______________4\n |
9 -- 15 |
5 -- 11 |
-15.984 kcal/mol |
3.41554 kcal/mol |
1.22241 kcal/mol |
1 16@LB@ | |@LB@ 5'- CC ACGCA...CGU-3'@LB@ GCAAA UGCGUGUC@LB@ :|||| ||||:|||@LB@ UGUUU ACGCGCAG@LB@3'-UUU...ACUAU AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -15.984 kcal/mol@LB@Unfolding Energy - mRNA 3.41554 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 5 -- 11@LB@ |
139 |
0.01337 |
0.3104 |
b1255 |
yciC |
-11.25 |
0.074167 |
287 -- 299 |
1 -- 13 |
UPF0259 family inner membrane protein |
|
_____________286___________300\n_____________|_____________|\n5'-AAU...UUGCU__________A__A-3'\n______________AUGUGCGUUU_UC\n______________|||:||||:|_||\n______________UACGCGCAGA_AG\n3'-UUU...UUGUU__________A__-5'\n_____________|____________|\n_____________14___________1\n |
290 -- 296 |
4 -- 10 |
-15.0519 kcal/mol |
2.63141 kcal/mol |
1.17519 kcal/mol |
286 300@LB@ | |@LB@5'-AAU...UUGCU A A-3'@LB@ AUGUGCGUUU UC@LB@ |||:||||:| ||@LB@ UACGCGCAGA AG@LB@3'-UUU...UUGUU A -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -15.0519 kcal/mol@LB@Unfolding Energy - mRNA 2.63141 kcal/mol@LB@Unfolding Energy - sRNA 1.17519 kcal/mol@LB@@LB@Position - mRNA 287 -- 299@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 4 -- 10@LB@ |
18 |
0.00061 |
0.1147 |
b2126 |
yehU |
-11.17 |
0.076396 |
235 -- 252 |
1 -- 18 |
inner membrane putative sensory kinase in two-component system with YehT |
|
_____________234________________253\n_____________|__________________|\n5'-GUC...GCUUC__________________UAGUC...UAA-3'\n______________AGCAGAUGUGCGUUUUUU\n______________|:||:|||:||||:|||:\n______________UUGUUUACGCGCAGAAAG\n3'-UUU...UACUA__________________-5'\n_____________|_________________|\n_____________19________________1\n |
246 -- 252 |
1 -- 7 |
-22.3117 kcal/mol |
9.89973 kcal/mol |
1.24077 kcal/mol |
234 253@LB@ | |@LB@5'-GUC...GCUUC UAGUC...UAA-3'@LB@ AGCAGAUGUGCGUUUUUU@LB@ |:||:|||:||||:|||:@LB@ UUGUUUACGCGCAGAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -22.3117 kcal/mol@LB@Unfolding Energy - mRNA 9.89973 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 235 -- 252@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 1 -- 7@LB@ |
19 |
0.0006629 |
0.1181 |
b2909 |
ygfB |
-11.13 |
0.077732 |
186 -- 206 |
4 -- 22 |
UPF0149 family protein |
|
_____________185___________________207\n_____________|_____________________|\n5'-AAA...CCCUU___C_________UUA_____AUACA...UCA-3'\n______________UGA_GACGAAUGC___UGUCU\n______________|||_:||:|||||___:||||\n______________ACU_UUGUUUACG___GCAGA\n3'-UUU...CUACU___A_________C_______AAG-5'\n_____________|_____________________|\n_____________23____________________3\n |
192 -- 198 |
10 -- 16 |
-17.2827 kcal/mol |
4.89762 kcal/mol |
1.2572 kcal/mol |
185 207@LB@ | |@LB@5'-AAA...CCCUU C UUA AUACA...UCA-3'@LB@ UGA GACGAAUGC UGUCU@LB@ ||| :||:||||| :||||@LB@ ACU UUGUUUACG GCAGA@LB@3'-UUU...CUACU A C AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -17.2827 kcal/mol@LB@Unfolding Energy - mRNA 4.89762 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
160 |
0.015 |
0.3104 |
b2022 |
hisB |
-11.12 |
0.077869 |
165 -- 171 |
5 -- 11 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________164_____172\n_____________|_______|\n5'-CAG...AGCCA_______AUUGA...AAC-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
165 -- 171 |
5 -- 11 |
-14.7431 kcal/mol |
2.50821 kcal/mol |
1.11145 kcal/mol |
164 172@LB@ | |@LB@5'-CAG...AGCCA AUUGA...AAC-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -14.7431 kcal/mol@LB@Unfolding Energy - mRNA 2.50821 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 165 -- 171@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 5 -- 11@LB@ |
11 |
0.0003246 |
0.08948 |
b2299 |
yfcD |
-11.11 |
0.078371 |
283 -- 295 |
5 -- 18 |
putative NUDIX hydrolase |
|
_____________282____________296\n_____________|______________|\n5'-AGA...CCGGG__________G___ACAGU-3'\n______________AACAAAUGCG_G_C\n______________||||||||||_|_|\n______________UUGUUUACGC_C_G\n3'-UUU...UACUA__________G_A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
286 -- 292 |
9 -- 15 |
-15.7313 kcal/mol |
3.39963 kcal/mol |
1.2243 kcal/mol |
282 296@LB@ | |@LB@5'-AGA...CCGGG G ACAGU-3'@LB@ AACAAAUGCG G C@LB@ |||||||||| | |@LB@ UUGUUUACGC C G@LB@3'-UUU...UACUA G A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.7313 kcal/mol@LB@Unfolding Energy - mRNA 3.39963 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 283 -- 295@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 9 -- 15@LB@ |
8 |
0.000167 |
0.07068 |
b0814 |
ompX |
-11.11 |
0.078421 |
202 -- 223 |
1 -- 22 |
outer membrane protein X |
|
_____________201____________________224\n_____________|______________________|\n5'-CUG...GGUUA___AAAA__U___A________AGCAC...CAC-3'\n______________UGA____AA_UGC_UGUCUUUC\n______________|||____||_|||_:|||||||\n______________ACU____UU_ACG_GCAGAAAG\n3'-UUU...CUACU___AUUG__U___C________-5'\n_____________|_____________________|\n_____________23____________________1\n |
217 -- 223 |
1 -- 7 |
-15.5509 kcal/mol |
3.18554 kcal/mol |
1.25963 kcal/mol |
201 224@LB@ | |@LB@5'-CUG...GGUUA AAAA U A AGCAC...CAC-3'@LB@ UGA AA UGC UGUCUUUC@LB@ ||| || ||| :|||||||@LB@ ACU UU ACG GCAGAAAG@LB@3'-UUU...CUACU AUUG U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5509 kcal/mol@LB@Unfolding Energy - mRNA 3.18554 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 202 -- 223@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
181 |
0.01793 |
0.3104 |
b1594 |
mlc |
-11.10 |
0.078496 |
11 -- 37 |
1 -- 18 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________10__________________________38\n_____________|___________________________|\n5'-AAA...UCAUG______GUCCGGC_______AA_____GUAUU...GUA-3'\n______________AACAAA_______UGCGCGU__CUUUC\n______________||||||_______|||||||__|||||\n______________UUGUUU_______ACGCGCA__GAAAG\n3'-UUU...UACUA___________________________-5'\n_____________|__________________________|\n_____________19_________________________1\n |
24 -- 30 |
6 -- 12 |
-16.8416 kcal/mol |
4.49753 kcal/mol |
1.24077 kcal/mol |
10 38@LB@ | |@LB@5'-AAA...UCAUG GUCCGGC AA GUAUU...GUA-3'@LB@ AACAAA UGCGCGU CUUUC@LB@ |||||| ||||||| |||||@LB@ UUGUUU ACGCGCA GAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -16.8416 kcal/mol@LB@Unfolding Energy - mRNA 4.49753 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 11 -- 37@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 6 -- 12@LB@ |
117 |
0.01191 |
0.3104 |
b2137 |
yohF |
-11.08 |
0.079147 |
231 -- 259 |
5 -- 35 |
putative oxidoreductase |
|
_____________230_____________________________260\n_____________|_______________________________|\n5'-UAA...CCUCC___________C____CAAA___________AUUAC...GGC-3'\n______________GAUUCGGGGAU___GG____GAGUGCGCGUU\n______________:||||:|||||___|:____:|:|||||||:\n______________UUAAGUCCCUA___CU____UUUACGCGCAG\n3'-UUU...GAGAC___________CUA__AUUG___________AAAG-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
253 -- 259 |
5 -- 11 |
-31.497 kcal/mol |
11.2631 kcal/mol |
9.15134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCUCC C CAAA AUUAC...GGC-3'@LB@ GAUUCGGGGAU GG GAGUGCGCGUU@LB@ :||||:||||| |: :|:|||||||:@LB@ UUAAGUCCCUA CU UUUACGCGCAG@LB@3'-UUU...GAGAC CUA AUUG AAAG-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -31.497 kcal/mol@LB@Unfolding Energy - mRNA 11.2631 kcal/mol@LB@Unfolding Energy - sRNA 9.15134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 5 -- 11@LB@ |
24 |
0.001508 |
0.1943 |
b0150 |
fhuA |
-11.07 |
0.079438 |
192 -- 210 |
5 -- 21 |
ferrichrome outer membrane transporter |
|
_____________191_________________211\n_____________|___________________|\n5'-GGA...UCAGA____UAC___UG_______CCAAA...CAG-3'\n______________GAUA___CAA__GCGCGUU\n______________||||___|||__||||||:\n______________CUAU___GUU__CGCGCAG\n3'-UUU...UACUA____U_____UA_______AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
204 -- 210 |
5 -- 11 |
-17.2518 kcal/mol |
4.92886 kcal/mol |
1.24955 kcal/mol |
191 211@LB@ | |@LB@5'-GGA...UCAGA UAC UG CCAAA...CAG-3'@LB@ GAUA CAA GCGCGUU@LB@ |||| ||| ||||||:@LB@ CUAU GUU CGCGCAG@LB@3'-UUU...UACUA U UA AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -17.2518 kcal/mol@LB@Unfolding Energy - mRNA 4.92886 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 192 -- 210@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 5 -- 11@LB@ |