| 139 |
0.00635 |
0.1535 |
b0800 |
ybiB |
-9.74 |
0.186276 |
120 -- 129 |
27 -- 36 |
putative family 3 glycosyltransferase |
|
_____________119________130\n_____________|__________|\n5'-GCC...CUGAA__________AAAAG...UCA-3'\n______________GGUAUAGUUA\n______________||||:||:||\n______________CCAUGUCGAU\n3'-UUU...AAGGA__________CGUAA...UCG-5'\n_____________|__________|\n_____________37_________26\n |
123 -- 129 |
27 -- 33 |
-12.0711 kcal/mol |
1.15693 kcal/mol |
1.17709 kcal/mol |
119 130@LB@ | |@LB@5'-GCC...CUGAA AAAAG...UCA-3'@LB@ GGUAUAGUUA@LB@ ||||:||:||@LB@ CCAUGUCGAU@LB@3'-UUU...AAGGA CGUAA...UCG-5'@LB@ | |@LB@ 37 26@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -12.0711 kcal/mol@LB@Unfolding Energy - mRNA 1.15693 kcal/mol@LB@Unfolding Energy - sRNA 1.17709 kcal/mol@LB@@LB@Position - mRNA 120 -- 129@LB@Position - sRNA 27 -- 36@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 88 |
0.002837 |
0.1082 |
b4377 |
yjjU |
-10.09 |
0.160689 |
120 -- 144 |
1 -- 33 |
putative patatin-like family phospholipase |
|
_____________119________________________________145\n_____________|__________________________________|\n5'-AGG...GUCCA____A___________C_________________GAAUA...GAC-3'\n______________GCGG_CUGGC_UUUUG_GG________UUUUAGC\n______________:|:|_||:||_||||:_||________|||:|||\n______________UGUC_GAUCG_AAAAU_CC________AAAGUCG\n3'-UUU...GACCA__________U_____A__CAAUACAA_______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
138 -- 144 |
1 -- 7 |
-20.956 kcal/mol |
9.37145 kcal/mol |
1.49313 kcal/mol |
119 145@LB@ | |@LB@5'-AGG...GUCCA A C GAAUA...GAC-3'@LB@ GCGG CUGGC UUUUG GG UUUUAGC@LB@ :|:| ||:|| ||||: || |||:|||@LB@ UGUC GAUCG AAAAU CC AAAGUCG@LB@3'-UUU...GACCA U A CAAUACAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -20.956 kcal/mol@LB@Unfolding Energy - mRNA 9.37145 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 120 -- 144@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 185 |
0.01059 |
0.1919 |
b3856 |
mobB |
-14.40 |
0.016564 |
123 -- 150 |
1 -- 31 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________122______________________________151\n_____________|________________________________|\n5'-GUG...CGUCU________GUC____C_____A__________GAUCA...CCA-3'\n______________GGCUGGCG____AUG_GGUUG____UUUCAGC\n______________:|||:||:____|||_||||:____|||||||\n______________UCGAUCGU____UAC_CCAAU____AAAGUCG\n3'-UUU...CCAUG________AAAA_________ACAA_______-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
144 -- 150 |
1 -- 7 |
-26.2194 kcal/mol |
10.3308 kcal/mol |
1.48722 kcal/mol |
122 151@LB@ | |@LB@5'-GUG...CGUCU GUC C A GAUCA...CCA-3'@LB@ GGCUGGCG AUG GGUUG UUUCAGC@LB@ :|||:||: ||| ||||: |||||||@LB@ UCGAUCGU UAC CCAAU AAAGUCG@LB@3'-UUU...CCAUG AAAA ACAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -26.2194 kcal/mol@LB@Unfolding Energy - mRNA 10.3308 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 123 -- 150@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 126 |
0.00537 |
0.142 |
b3789 |
rffH |
-9.20 |
0.230539 |
124 -- 140 |
30 -- 46 |
glucose-1-phosphate thymidylyltransferase |
|
_____________123_______________141\n_____________|_________________|\n5'-GGC...AAGCU_____AAG_A_______GACGG...UGA-3'\n______________GGUGG___C_GGUGCAG\n______________|||||___|_|||:|||\n______________CCACC___G_CCAUGUC\n3'-UUU...UUCCU_____AAG_A_______GAUCG...UCG-5'\n_____________|_________________|\n_____________47________________29\n |
134 -- 140 |
30 -- 36 |
-19.3061 kcal/mol |
5.8192 kcal/mol |
4.28755 kcal/mol |
123 141@LB@ | |@LB@5'-GGC...AAGCU AAG A GACGG...UGA-3'@LB@ GGUGG C GGUGCAG@LB@ ||||| | |||:|||@LB@ CCACC G CCAUGUC@LB@3'-UUU...UUCCU AAG A GAUCG...UCG-5'@LB@ | |@LB@ 47 29@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -19.3061 kcal/mol@LB@Unfolding Energy - mRNA 5.8192 kcal/mol@LB@Unfolding Energy - sRNA 4.28755 kcal/mol@LB@@LB@Position - mRNA 124 -- 140@LB@Position - sRNA 30 -- 46@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 17 |
0.0001135 |
0.02244 |
b3531 |
bcsZ |
-11.80 |
0.072553 |
125 -- 136 |
14 -- 30 |
endo-1 4-D-glucanase |
|
_____________124_______________137\n_____________|_________________|\n5'-UCA...AUAUU_________________ACUGU...AGG-3'\n______________GCUGGCA_____UGGGU\n______________|||:|||_____|||||\n______________CGAUCGU_____ACCCA\n3'-UUU...CAUGU_______AAAAU_____AUACA...UCG-5'\n_____________|_________________|\n_____________31________________13\n |
125 -- 131 |
24 -- 30 |
-17.2227 kcal/mol |
4.01076 kcal/mol |
1.40705 kcal/mol |
124 137@LB@ | |@LB@5'-UCA...AUAUU ACUGU...AGG-3'@LB@ GCUGGCA UGGGU@LB@ |||:||| |||||@LB@ CGAUCGU ACCCA@LB@3'-UUU...CAUGU AAAAU AUACA...UCG-5'@LB@ | |@LB@ 31 13@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.2227 kcal/mol@LB@Unfolding Energy - mRNA 4.01076 kcal/mol@LB@Unfolding Energy - sRNA 1.40705 kcal/mol@LB@@LB@Position - mRNA 125 -- 136@LB@Position - sRNA 14 -- 30@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 197 |
0.01153 |
0.1967 |
b0610 |
rnk |
-10.49 |
0.135367 |
130 -- 162 |
7 -- 39 |
regulator of nucleoside diphosphate kinase |
|
_____________129__________________________________163\n_____________|____________________________________|\n5'-UCU...CGCCG___________G__G_____CUUU____________AUCUG...CGU-3'\n______________CCUG__ACGGU_AG_GUUUU____UGGG_UAUGUUU\n______________||||__||:|:_||_:||||____||||_|||||||\n______________GGAC__UGUCG_UC_UAAAA____ACCC_AUACAAA\n3'-UUU...ACCAA____CA_____A__G_____U_______A_______AAGUCG-5'\n_____________|____________________________________|\n_____________40___________________________________6\n |
156 -- 162 |
7 -- 13 |
-25.6411 kcal/mol |
10.5512 kcal/mol |
4.60345 kcal/mol |
129 163@LB@ | |@LB@5'-UCU...CGCCG G G CUUU AUCUG...CGU-3'@LB@ CCUG ACGGU AG GUUUU UGGG UAUGUUU@LB@ |||| ||:|: || :|||| |||| |||||||@LB@ GGAC UGUCG UC UAAAA ACCC AUACAAA@LB@3'-UUU...ACCAA CA A G U A AAGUCG-5'@LB@ | |@LB@ 40 6@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.6411 kcal/mol@LB@Unfolding Energy - mRNA 10.5512 kcal/mol@LB@Unfolding Energy - sRNA 4.60345 kcal/mol@LB@@LB@Position - mRNA 130 -- 162@LB@Position - sRNA 7 -- 39@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 11 |
3.883e-05 |
0.01168 |
b4074 |
nrfE |
-17.71 |
0.001322 |
131 -- 144 |
35 -- 48 |
heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE |
|
_____________130____________145\n_____________|______________|\n5'-ACC...GAAAA______________ACGUA...UGC-3'\n______________GAGGUGGUUUCUGG\n______________|||||||||:||||\n______________CUCCACCAAGGACC\n3'-UUU...GAUUC______________AUGUC...UCG-5'\n_____________|______________|\n_____________49_____________34\n |
138 -- 144 |
35 -- 41 |
-26.5218 kcal/mol |
5.67902 kcal/mol |
3.13693 kcal/mol |
130 145@LB@ | |@LB@5'-ACC...GAAAA ACGUA...UGC-3'@LB@ GAGGUGGUUUCUGG@LB@ |||||||||:||||@LB@ CUCCACCAAGGACC@LB@3'-UUU...GAUUC AUGUC...UCG-5'@LB@ | |@LB@ 49 34@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -26.5218 kcal/mol@LB@Unfolding Energy - mRNA 5.67902 kcal/mol@LB@Unfolding Energy - sRNA 3.13693 kcal/mol@LB@@LB@Position - mRNA 131 -- 144@LB@Position - sRNA 35 -- 48@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 181 |
0.0104 |
0.1919 |
b2106 |
rcnA |
-12.10 |
0.062308 |
133 -- 155 |
15 -- 50 |
membrane protein conferring nickel and cobalt resistance |
|
_____________132__________________________________156\n_____________|____________________________________|\n5'-UUC...CUACU_______A__A__A______________________GGGGA...ACU-3'\n______________GGGGGGU_GU_UC_GGUAC_____________UGGG\n______________:||:|||_||_:|_|||||_____________||||\n______________UCCUCCA_CA_GG_CCAUG_____________ACCC\n3'-UUU...CCGAU_______C__A__A_____UCGAUCGUAAAAU____AAUAC...UCG-5'\n_____________|____________________________________|\n_____________51___________________________________14\n |
133 -- 139 |
44 -- 50 |
-22.0891 kcal/mol |
5.35824 kcal/mol |
4.62773 kcal/mol |
132 156@LB@ | |@LB@5'-UUC...CUACU A A A GGGGA...ACU-3'@LB@ GGGGGGU GU UC GGUAC UGGG@LB@ :||:||| || :| ||||| ||||@LB@ UCCUCCA CA GG CCAUG ACCC@LB@3'-UUU...CCGAU C A A UCGAUCGUAAAAU AAUAC...UCG-5'@LB@ | |@LB@ 51 14@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.0891 kcal/mol@LB@Unfolding Energy - mRNA 5.35824 kcal/mol@LB@Unfolding Energy - sRNA 4.62773 kcal/mol@LB@@LB@Position - mRNA 133 -- 155@LB@Position - sRNA 15 -- 50@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 58 |
0.001429 |
0.08147 |
b0698 |
kdpA |
-14.04 |
0.020858 |
136 -- 172 |
7 -- 35 |
potassium translocating ATPase subunit A |
|
_____________135___________________________________173\n_____________|_____________________________________|\n5'-GCU...CCGGC____U___________UAUUAC________CUG____AUGCC...ACA-3'\n______________GUAU_GCUGGUGUUUU______UGGGUUAU___GUUU\n______________|||:_|||:|::||||______||||||||___||||\n______________CAUG_CGAUCGUAAAA______ACCCAAUA___CAAA\n3'-UUU...AGGAC____U___________U____________________AAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________6\n |
159 -- 165 |
11 -- 17 |
-23.8836 kcal/mol |
8.35779 kcal/mol |
1.49058 kcal/mol |
135 173@LB@ | |@LB@5'-GCU...CCGGC U UAUUAC CUG AUGCC...ACA-3'@LB@ GUAU GCUGGUGUUUU UGGGUUAU GUUU@LB@ |||: |||:|::|||| |||||||| ||||@LB@ CAUG CGAUCGUAAAA ACCCAAUA CAAA@LB@3'-UUU...AGGAC U U AAGUCG-5'@LB@ | |@LB@ 36 6@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -23.8836 kcal/mol@LB@Unfolding Energy - mRNA 8.35779 kcal/mol@LB@Unfolding Energy - sRNA 1.49058 kcal/mol@LB@@LB@Position - mRNA 136 -- 172@LB@Position - sRNA 7 -- 35@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 127 |
0.005388 |
0.142 |
b2721 |
hycE |
-10.66 |
0.125013 |
137 -- 158 |
1 -- 36 |
hydrogenase 3 large subunit |
|
_____________136___________________________________159\n_____________|_____________________________________|\n5'-UUC...GGCUG___UU____UU__________________________GUUCG...UGA-3'\n______________GGU__GGCU__GCAU_______________UUUUAGC\n______________|||__:|||__||||_______________|||:|||\n______________CCA__UCGA__CGUA_______________AAAGUCG\n3'-UUU...AAGGA___UG____U_____AAAUACCCAAUACAA_______-5'\n_____________|____________________________________|\n_____________37___________________________________1\n |
152 -- 158 |
1 -- 7 |
-16.3373 kcal/mol |
4.17778 kcal/mol |
1.49509 kcal/mol |
136 159@LB@ | |@LB@5'-UUC...GGCUG UU UU GUUCG...UGA-3'@LB@ GGU GGCU GCAU UUUUAGC@LB@ ||| :||| |||| |||:|||@LB@ CCA UCGA CGUA AAAGUCG@LB@3'-UUU...AAGGA UG U AAAUACCCAAUACAA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -10.66 kcal/mol@LB@Hybridization Energy -16.3373 kcal/mol@LB@Unfolding Energy - mRNA 4.17778 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 137 -- 158@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
