128 |
0.00928 |
0.2491 |
b0491 |
fetB |
-12.70 |
0.090276 |
178 -- 195 |
1 -- 17 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________177________________196\n_____________|__________________|\n5'-GCC...CAUGC________U____GAA__ACGCU...AGA-3'\n______________CGGAGAAA_GCAG___GC\n______________|::|||||_||||___||\n______________GUUUCUUU_CGUC___CG\n3'-UUU...CUGUA________U____AC___-5'\n_____________|_________________|\n_____________18________________1\n |
179 -- 185 |
10 -- 16 |
-17.1669 kcal/mol |
3.03232 kcal/mol |
1.43853 kcal/mol |
177 196@LB@ | |@LB@5'-GCC...CAUGC U GAA ACGCU...AGA-3'@LB@ CGGAGAAA GCAG GC@LB@ |::||||| |||| ||@LB@ GUUUCUUU CGUC CG@LB@3'-UUU...CUGUA U AC -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.1669 kcal/mol@LB@Unfolding Energy - mRNA 3.03232 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 10 -- 16@LB@ |
129 |
0.009293 |
0.2491 |
b0428 |
cyoE |
-12.51 |
0.098557 |
18 -- 26 |
1 -- 9 |
protoheme IX farnesyltransferase |
|
_____________17________27\n_____________|_________|\n5'-GGA...GCAAU_________ACAGG...GCA-3'\n______________GGCAGUGGU\n______________:|||||||:\n______________UCGUCACCG\n3'-UUU...UCUUU_________-5'\n_____________|________|\n_____________10_______1\n |
20 -- 26 |
1 -- 7 |
-15.8954 kcal/mol |
2.13019 kcal/mol |
1.2588 kcal/mol |
17 27@LB@ | |@LB@5'-GGA...GCAAU ACAGG...GCA-3'@LB@ GGCAGUGGU@LB@ :|||||||:@LB@ UCGUCACCG@LB@3'-UUU...UCUUU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -15.8954 kcal/mol@LB@Unfolding Energy - mRNA 2.13019 kcal/mol@LB@Unfolding Energy - sRNA 1.2588 kcal/mol@LB@@LB@Position - mRNA 18 -- 26@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
131 |
0.009354 |
0.2491 |
b4478 |
dgoD |
-14.24 |
0.041949 |
180 -- 199 |
1 -- 22 |
D-galactonate dehydratase |
|
_____________179____________________200\n_____________|______________________|\n5'-AAA...GUUAA_____AUC______________AAUGA...UGA-3'\n______________GGCGU____GAGAGGCAGUG_C\n______________|:|:|____||:|:||||||_|\n______________CUGUA____CUUUUCGUCAC_G\n3'-UUU...UACCC_____GUUU___________C_-5'\n_____________|_____________________|\n_____________23____________________1\n |
192 -- 198 |
3 -- 9 |
-21.1696 kcal/mol |
5.38995 kcal/mol |
1.54023 kcal/mol |
179 200@LB@ | |@LB@5'-AAA...GUUAA AUC AAUGA...UGA-3'@LB@ GGCGU GAGAGGCAGUG C@LB@ |:|:| ||:|:|||||| |@LB@ CUGUA CUUUUCGUCAC G@LB@3'-UUU...UACCC GUUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.1696 kcal/mol@LB@Unfolding Energy - mRNA 5.38995 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 3 -- 9@LB@ |
152 |
0.01123 |
0.2504 |
b1872 |
torZ |
-17.40 |
0.006326 |
76 -- 107 |
1 -- 34 |
trimethylamine N-oxide reductase system III catalytic subunit |
b0997 b3551 |
_____________75___________________________________108\n_____________|____________________________________|\n5'-ACG...CAUUG___AA_________________CC_________A__GAAAA...AGA-3'\n______________CCA__GGAAUGGGGGCA_CGAA____AGCA_UG_GC\n______________|||__::|||||||:||_|:||____||||_||_||\n______________GGU__UUUUACCCCUGU_GUUU____UCGU_AC_CG\n3'-UUU...CCCGA___G_____________A____CUUU____C_____-5'\n_____________|___________________________________|\n_____________35__________________________________1\n |
86 -- 92 |
19 -- 25 |
-29.6219 kcal/mol |
7.95271 kcal/mol |
4.26884 kcal/mol |
75 108@LB@ | |@LB@5'-ACG...CAUUG AA CC A GAAAA...AGA-3'@LB@ CCA GGAAUGGGGGCA CGAA AGCA UG GC@LB@ ||| ::|||||||:|| |:|| |||| || ||@LB@ GGU UUUUACCCCUGU GUUU UCGU AC CG@LB@3'-UUU...CCCGA G A CUUU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -29.6219 kcal/mol@LB@Unfolding Energy - mRNA 7.95271 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 76 -- 107@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 19 -- 25@LB@ |
172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
141 |
0.01037 |
0.2504 |
b2161 |
nupX |
-15.31 |
0.023296 |
54 -- 80 |
1 -- 26 |
nucleoside permease |
b2164 |
_____________53____________________________81\n_____________|_____________________________|\n5'-UUG...GGUUC_______UA_________U_______C__GGCUA...GCG-3'\n______________UGGGGAU__GUCGAAGAG__GC_GUG_GC\n______________||||||:__:||:||||:__||_|||_||\n______________ACCCCUG__UAGUUUCUU__CG_CAC_CG\n3'-UUU...GUUUU__________________UU__U______-5'\n_____________|____________________________|\n_____________27___________________________1\n |
65 -- 71 |
11 -- 17 |
-27.7009 kcal/mol |
9.87339 kcal/mol |
2.51842 kcal/mol |
53 81@LB@ | |@LB@5'-UUG...GGUUC UA U C GGCUA...GCG-3'@LB@ UGGGGAU GUCGAAGAG GC GUG GC@LB@ ||||||: :||:||||: || ||| ||@LB@ ACCCCUG UAGUUUCUU CG CAC CG@LB@3'-UUU...GUUUU UU U -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.7009 kcal/mol@LB@Unfolding Energy - mRNA 9.87339 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 11 -- 17@LB@ |
136 |
0.00981 |
0.2504 |
b4063 |
soxR |
-14.24 |
0.041834 |
39 -- 60 |
1 -- 21 |
redox-sensitive transcriptional activator of soxS; autorepressor |
|
_____________38_____________________61\n_____________|______________________|\n5'-GCA...CGACU_______U_UU______C____CAAUA...GUA-3'\n______________ACAUCAA_G__AAGCGG_UGGU\n______________|||||||_|__||||:|_|||:\n______________UGUAGUU_C__UUCGUC_ACCG\n3'-UUU...ACCCC_______U_UU___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
39 -- 45 |
15 -- 21 |
-21.0533 kcal/mol |
5.29766 kcal/mol |
1.51103 kcal/mol |
38 61@LB@ | |@LB@5'-GCA...CGACU U UU C CAAUA...GUA-3'@LB@ ACAUCAA G AAGCGG UGGU@LB@ ||||||| | ||||:| |||:@LB@ UGUAGUU C UUCGUC ACCG@LB@3'-UUU...ACCCC U UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.0533 kcal/mol@LB@Unfolding Energy - mRNA 5.29766 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 15 -- 21@LB@ |
137 |
0.0102 |
0.2504 |
b0957 |
ompA |
-10.25 |
0.250752 |
198 -- 232 |
1 -- 30 |
outer membrane protein A (3a;II*;G;d) |
|
_____________197_________________________________233\n_____________|___________________________________|\n5'-CUU...CGCAA______AAAAA____GCUAUCGC__UU________ACUGG...AAC-3'\n______________AAAAUG_____GACA________GA__GCAGUGGC\n______________||||||_____||||________:|__||||||||\n______________UUUUAC_____CUGU________UU__CGUCACCG\n3'-UUU...AGGUG______CC_______AGUUUC____UU________-5'\n_____________|__________________________________|\n_____________31_________________________________1\n |
226 -- 232 |
1 -- 7 |
-21.624 kcal/mol |
8.85247 kcal/mol |
2.51911 kcal/mol |
197 233@LB@ | |@LB@5'-CUU...CGCAA AAAAA GCUAUCGC UU ACUGG...AAC-3'@LB@ AAAAUG GACA GA GCAGUGGC@LB@ |||||| |||| :| ||||||||@LB@ UUUUAC CUGU UU CGUCACCG@LB@3'-UUU...AGGUG CC AGUUUC UU -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.624 kcal/mol@LB@Unfolding Energy - mRNA 8.85247 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 232@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 1 -- 7@LB@ |
138 |
0.0102 |
0.2504 |
b0830 |
gsiB |
-12.88 |
0.082739 |
282 -- 298 |
1 -- 16 |
glutathione ABC transporter periplasmic binding protein |
|
_____________281_______________299\n_____________|_________________|\n5'-GGC...CUGCC_____UGU_________GG-3'\n______________AAAGA___GGUGGUGGC\n______________|||||___:|::|||||\n______________UUUCU___UCGUCACCG\n3'-UUU...UGUAG_____UU__________-5'\n_____________|________________|\n_____________17_______________1\n |
292 -- 298 |
1 -- 7 |
-17.0557 kcal/mol |
2.82856 kcal/mol |
1.34555 kcal/mol |
281 299@LB@ | |@LB@5'-GGC...CUGCC UGU GG-3'@LB@ AAAGA GGUGGUGGC@LB@ ||||| :|::|||||@LB@ UUUCU UCGUCACCG@LB@3'-UUU...UGUAG UU -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.0557 kcal/mol@LB@Unfolding Energy - mRNA 2.82856 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
140 |
0.01029 |
0.2504 |
b3247 |
rng |
-10.20 |
0.255190 |
49 -- 63 |
1 -- 14 |
ribonuclease G |
|
_____________48______________64\n_____________|_______________|\n5'-GUU...CCGUU___U_______GU__AUACG...CGC-3'\n______________AGA_AAAGCAG__GC\n______________|||_|||||||__||\n______________UCU_UUUCGUC__CG\n3'-UUU...UAGUU___________AC__-5'\n_____________|______________|\n_____________15_____________1\n |
53 -- 59 |
5 -- 11 |
-13.7724 kcal/mol |
2.22711 kcal/mol |
1.34059 kcal/mol |
48 64@LB@ | |@LB@5'-GUU...CCGUU U GU AUACG...CGC-3'@LB@ AGA AAAGCAG GC@LB@ ||| ||||||| ||@LB@ UCU UUUCGUC CG@LB@3'-UUU...UAGUU AC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -13.7724 kcal/mol@LB@Unfolding Energy - mRNA 2.22711 kcal/mol@LB@Unfolding Energy - sRNA 1.34059 kcal/mol@LB@@LB@Position - mRNA 49 -- 63@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |