88 |
0.01545 |
0.5385 |
b3009 |
yghB |
-9.13 |
0.148475 |
202 -- 216 |
61 -- 78 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________201________________217\n_____________|__________________|\n5'-UCU...GUCCA_______________A__AUAUC...UUG-3'\n______________UGGCU___GUUAUUC_AG\n______________|||||___|||||||_||\n______________ACCGA___CAAUAAG_UC\n3'-CGC...GUGCA_____AAU_______C__AACUC...AAG-5'\n_____________|__________________|\n_____________79_________________60\n |
207 -- 213 |
64 -- 70 |
-14.1767 kcal/mol |
4.24529 kcal/mol |
0.796888 kcal/mol |
201 217@LB@ | |@LB@5'-UCU...GUCCA A AUAUC...UUG-3'@LB@ UGGCU GUUAUUC AG@LB@ ||||| ||||||| ||@LB@ ACCGA CAAUAAG UC@LB@3'-CGC...GUGCA AAU C AACUC...AAG-5'@LB@ | |@LB@ 79 60@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -14.1767 kcal/mol@LB@Unfolding Energy - mRNA 4.24529 kcal/mol@LB@Unfolding Energy - sRNA 0.796888 kcal/mol@LB@@LB@Position - mRNA 202 -- 216@LB@Position - sRNA 61 -- 78@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 64 -- 70@LB@ |
192 |
0.03364 |
0.5559 |
b2333 |
yfcP |
-8.48 |
0.190877 |
22 -- 36 |
61 -- 77 |
putative fimbrial-like adhesin protein |
|
_____________21________________37\n_____________|_________________|\n5'-GCA...UACCC_________A_______CUUCA...AUU-3'\n______________GGUUUUGGU___UCGAG\n______________||:|||:||___|||||\n______________CCGAAAUCA___AGCUC\n3'-CGC...UGCAA_________AUA_____AACUC...AAG-5'\n_____________|_________________|\n_____________78________________60\n |
23 -- 29 |
70 -- 76 |
-16.4218 kcal/mol |
7.14733 kcal/mol |
0.796269 kcal/mol |
21 37@LB@ | |@LB@5'-GCA...UACCC A CUUCA...AUU-3'@LB@ GGUUUUGGU UCGAG@LB@ ||:|||:|| |||||@LB@ CCGAAAUCA AGCUC@LB@3'-CGC...UGCAA AUA AACUC...AAG-5'@LB@ | |@LB@ 78 60@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -16.4218 kcal/mol@LB@Unfolding Energy - mRNA 7.14733 kcal/mol@LB@Unfolding Energy - sRNA 0.796269 kcal/mol@LB@@LB@Position - mRNA 22 -- 36@LB@Position - sRNA 61 -- 77@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 70 -- 76@LB@ |
107 |
0.01867 |
0.5385 |
b1478 |
adhP |
-13.80 |
0.022588 |
200 -- 222 |
62 -- 83 |
ethanol-active dehydrogenase/acetaldehyde-active reductase |
|
_____________199_____________________223\n_____________|_______________________|\n5'-GCA...GGAAC____AA____GC_______A___AGGAU...GUU-3'\n______________UAUG__GGCU__AGUUGUU_CGA\n______________:|:|__||||__||||:||_|||\n______________GUGC__CCGA__UCAAUAA_GCU\n3'-CGC...UUCAA____AA____AA___________CAACU...AAG-5'\n_____________|_______________________|\n_____________84______________________61\n |
212 -- 218 |
65 -- 71 |
-18.0685 kcal/mol |
2.64248 kcal/mol |
1.62352 kcal/mol |
199 223@LB@ | |@LB@5'-GCA...GGAAC AA GC A AGGAU...GUU-3'@LB@ UAUG GGCU AGUUGUU CGA@LB@ :|:| |||| ||||:|| |||@LB@ GUGC CCGA UCAAUAA GCU@LB@3'-CGC...UUCAA AA AA CAACU...AAG-5'@LB@ | |@LB@ 84 61@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -18.0685 kcal/mol@LB@Unfolding Energy - mRNA 2.64248 kcal/mol@LB@Unfolding Energy - sRNA 1.62352 kcal/mol@LB@@LB@Position - mRNA 200 -- 222@LB@Position - sRNA 62 -- 83@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 65 -- 71@LB@ |
28 |
0.005203 |
0.5385 |
b3308 |
rplE |
-12.95 |
0.031988 |
121 -- 134 |
62 -- 77 |
50S ribosomal subunit protein L5 |
|
_____________120______________135\n_____________|________________|\n5'-AAA...GUGUA________________AGACG...AGA-3'\n______________GGCUUUAG__AUUCGA\n______________||||||||__||||||\n______________CCGAAAUC__UAAGCU\n3'-CGC...UGCAA________AA______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
122 -- 128 |
70 -- 76 |
-17.2589 kcal/mol |
3.56808 kcal/mol |
0.736118 kcal/mol |
120 135@LB@ | |@LB@5'-AAA...GUGUA AGACG...AGA-3'@LB@ GGCUUUAG AUUCGA@LB@ |||||||| ||||||@LB@ CCGAAAUC UAAGCU@LB@3'-CGC...UGCAA AA CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -17.2589 kcal/mol@LB@Unfolding Energy - mRNA 3.56808 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 121 -- 134@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 70 -- 76@LB@ |
177 |
0.03112 |
0.5559 |
b0080 |
cra |
-12.94 |
0.032158 |
57 -- 78 |
62 -- 84 |
transcriptional repressor-activator for carbon metabolism |
|
_____________56_______________________79\n_____________|________________________|\n5'-GGC...ACAUG_________G____UU________AAUCA...AAA-3'\n______________UCACGUUGG_CUUU__UUG__CGA\n______________|||||||||_||||__||:__|||\n______________AGUGCAACC_GAAA__AAU__GCU\n3'-CGC...UUUCA______________UC___AA___CAACU...AAG-5'\n_____________|________________________|\n_____________85_______________________61\n |
59 -- 65 |
76 -- 82 |
-19.2849 kcal/mol |
4.65103 kcal/mol |
1.6921 kcal/mol |
56 79@LB@ | |@LB@5'-GGC...ACAUG G UU AAUCA...AAA-3'@LB@ UCACGUUGG CUUU UUG CGA@LB@ ||||||||| |||| ||: |||@LB@ AGUGCAACC GAAA AAU GCU@LB@3'-CGC...UUUCA UC AA CAACU...AAG-5'@LB@ | |@LB@ 85 61@LB@@LB@@LB@Energy -12.94 kcal/mol@LB@Hybridization Energy -19.2849 kcal/mol@LB@Unfolding Energy - mRNA 4.65103 kcal/mol@LB@Unfolding Energy - sRNA 1.6921 kcal/mol@LB@@LB@Position - mRNA 57 -- 78@LB@Position - sRNA 62 -- 84@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 76 -- 82@LB@ |
44 |
0.009138 |
0.5385 |
b4148 |
sugE |
-12.73 |
0.035076 |
273 -- 288 |
62 -- 77 |
multidrug efflux system protein |
|
_____________272______________289\n_____________|________________|\n5'-CGC...CCCAC_________C______CGCCG...UUA-3'\n______________GGCUUUAGU_GUUUGA\n______________|||||||||_:||:||\n______________CCGAAAUCA_UAAGCU\n3'-CGC...UGCAA_________A______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
275 -- 281 |
69 -- 75 |
-18.0703 kcal/mol |
4.60455 kcal/mol |
0.736118 kcal/mol |
272 289@LB@ | |@LB@5'-CGC...CCCAC C CGCCG...UUA-3'@LB@ GGCUUUAGU GUUUGA@LB@ ||||||||| :||:||@LB@ CCGAAAUCA UAAGCU@LB@3'-CGC...UGCAA A CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -18.0703 kcal/mol@LB@Unfolding Energy - mRNA 4.60455 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 273 -- 288@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 69 -- 75@LB@ |
19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
178 |
0.03115 |
0.5559 |
b2528 |
iscA |
-9.66 |
0.120899 |
187 -- 207 |
62 -- 80 |
FeS cluster assembly protein |
|
_____________186___________________208\n_____________|_____________________|\n5'-UUC...UAAGA____A_G_________G____UUACA...CCG-3'\n______________GUUG_G_UUUGGUUAU_UCGA\n______________||||_|_|||:|||||_||||\n______________CAAC_C_AAAUCAAUA_AGCU\n3'-CGC...AAGUG______G______________CAACU...AAG-5'\n_____________|_____________________|\n_____________81____________________61\n |
196 -- 202 |
66 -- 72 |
-17.7068 kcal/mol |
7.30815 kcal/mol |
0.737855 kcal/mol |
186 208@LB@ | |@LB@5'-UUC...UAAGA A G G UUACA...CCG-3'@LB@ GUUG G UUUGGUUAU UCGA@LB@ |||| | |||:||||| ||||@LB@ CAAC C AAAUCAAUA AGCU@LB@3'-CGC...AAGUG G CAACU...AAG-5'@LB@ | |@LB@ 81 61@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -17.7068 kcal/mol@LB@Unfolding Energy - mRNA 7.30815 kcal/mol@LB@Unfolding Energy - sRNA 0.737855 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 62 -- 80@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 66 -- 72@LB@ |
162 |
0.02861 |
0.5559 |
b0564 |
appY |
-9.53 |
0.127084 |
148 -- 162 |
62 -- 79 |
global transcriptional activator; DLP12 prophage |
b1499 b3515 b4116 b0566 b3516 |
_____________147________________163\n_____________|__________________|\n5'-AAA...UUUAA__________________CUACU...UAA-3'\n______________UUGGUU___GUUAUUUGA\n______________||||:|___||||||:||\n______________AACCGA___CAAUAAGCU\n3'-CGC...AGUGC______AAU_________CAACU...AAG-5'\n_____________|__________________|\n_____________80_________________61\n |
156 -- 162 |
62 -- 68 |
-13.1987 kcal/mol |
2.92728 kcal/mol |
0.737706 kcal/mol |
147 163@LB@ | |@LB@5'-AAA...UUUAA CUACU...UAA-3'@LB@ UUGGUU GUUAUUUGA@LB@ ||||:| ||||||:||@LB@ AACCGA CAAUAAGCU@LB@3'-CGC...AGUGC AAU CAACU...AAG-5'@LB@ | |@LB@ 80 61@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -13.1987 kcal/mol@LB@Unfolding Energy - mRNA 2.92728 kcal/mol@LB@Unfolding Energy - sRNA 0.737706 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 62 -- 79@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
43 |
0.009109 |
0.5385 |
b2531 |
iscR |
-9.39 |
0.134324 |
275 -- 298 |
62 -- 87 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________274________________________299\n_____________|__________________________|\n5'-AUG...GGCCC___A__________GAUAUUUC____AC-3'\n______________GGU_C_CGUUGGCU_________CGA\n______________:||_|_||||||||_________|||\n______________UCA_G_GCAACCGA_________GCU\n3'-CGC...CGUUU___A_U________AAUCAAUAA___CAACU...AAG-5'\n_____________|__________________________|\n_____________88_________________________61\n |
281 -- 287 |
74 -- 80 |
-16.3089 kcal/mol |
5.20915 kcal/mol |
1.70771 kcal/mol |
274 299@LB@ | |@LB@5'-AUG...GGCCC A GAUAUUUC AC-3'@LB@ GGU C CGUUGGCU CGA@LB@ :|| | |||||||| |||@LB@ UCA G GCAACCGA GCU@LB@3'-CGC...CGUUU A U AAUCAAUAA CAACU...AAG-5'@LB@ | |@LB@ 88 61@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -16.3089 kcal/mol@LB@Unfolding Energy - mRNA 5.20915 kcal/mol@LB@Unfolding Energy - sRNA 1.70771 kcal/mol@LB@@LB@Position - mRNA 275 -- 298@LB@Position - sRNA 62 -- 87@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 74 -- 80@LB@ |