88 |
0.002437 |
0.09689 |
b0940 |
elfC |
-8.14 |
0.278491 |
92 -- 131 |
23 -- 58 |
putative outer membrane fimbrial subunit export usher protein |
b3144 b0532 b4317 |
_____________91_________________________________________132\n_____________|__________________________________________|\n5'-AUU...CUGCC________CCAAA_____GC___________AUCGAA_____AAUGA...CAC-3'\n______________AAAGGGGG______AAUA___AGCGUAACGU______CCAUC\n______________|||||::|______||||___||||:||||:______|||||\n______________UUUCCUUC______UUAU___UCGCGUUGCG______GGUAG\n3'-UUU...AGUUU________AUUCUG____ACC_____________________CGAAC...ACG-5'\n_____________|__________________________________________|\n_____________59_________________________________________22\n |
112 -- 118 |
30 -- 36 |
-29.3003 kcal/mol |
7.72593 kcal/mol |
13.4354 kcal/mol |
91 132@LB@ | |@LB@5'-AUU...CUGCC CCAAA GC AUCGAA AAUGA...CAC-3'@LB@ AAAGGGGG AAUA AGCGUAACGU CCAUC@LB@ |||||::| |||| ||||:||||: |||||@LB@ UUUCCUUC UUAU UCGCGUUGCG GGUAG@LB@3'-UUU...AGUUU AUUCUG ACC CGAAC...ACG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -29.3003 kcal/mol@LB@Unfolding Energy - mRNA 7.72593 kcal/mol@LB@Unfolding Energy - sRNA 13.4354 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 30 -- 36@LB@ |
112 |
0.003634 |
0.1131 |
b1473 |
yddG |
-8.08 |
0.286569 |
177 -- 226 |
24 -- 55 |
aromatic amino acid exporter |
|
_____________176________________________________________________227\n_____________|__________________________________________________|\n5'-GCG...UUAAC__C___A_______AACA_C____AUGACACGACAAAAA___________AGGGC...CGG-3'\n______________GG_AAG_GAGACAA____G_GAGC_______________GCAACGCUCAU\n______________||_|||_:||||||____|_||||_______________|||||||:|||\n______________CC_UUC_UUCUGUU____C_CUCG_______________CGUUGCGGGUA\n3'-UUU...UUUUU______A_______AUA_________________________________GCGAA...ACG-5'\n_____________|__________________________________________________|\n_____________56_________________________________________________23\n |
216 -- 222 |
28 -- 34 |
-30.4707 kcal/mol |
9.38627 kcal/mol |
13.0079 kcal/mol |
176 227@LB@ | |@LB@5'-GCG...UUAAC C A AACA C AUGACACGACAAAAA AGGGC...CGG-3'@LB@ GG AAG GAGACAA G GAGC GCAACGCUCAU@LB@ || ||| :|||||| | |||| |||||||:|||@LB@ CC UUC UUCUGUU C CUCG CGUUGCGGGUA@LB@3'-UUU...UUUUU A AUA GCGAA...ACG-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -30.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.38627 kcal/mol@LB@Unfolding Energy - sRNA 13.0079 kcal/mol@LB@@LB@Position - mRNA 177 -- 226@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 28 -- 34@LB@ |
83 |
0.001966 |
0.08273 |
b1584 |
speG |
-9.79 |
0.123144 |
169 -- 214 |
25 -- 77 |
spermidine N(1)-acetyltransferase |
|
_____________168_____________________________________________________215\n_____________|_______________________________________________________|\n5'-UCU...UAACC__________________________U____G____CGUUAU___CA________CAGUG...GGU-3'\n______________UGUUAU____UGAUUUA____AGGAA_GUAA_GACA_______GC__AGCGCCCA\n______________||:|||____|:|||:|____|||||_||||_||||_______||__|:||||||\n______________ACGAUA____AUUAAGU____UCCUU_CAUU_CUGU_______CG__UUGCGGGU\n3'-UUU...UUAAC______CGUC_______UUUU_______________UAUACCU__CG________AGCGA...ACG-5'\n_____________|_______________________________________________________|\n_____________78______________________________________________________24\n |
208 -- 214 |
25 -- 31 |
-32.6914 kcal/mol |
9.23779 kcal/mol |
13.6641 kcal/mol |
168 215@LB@ | |@LB@5'-UCU...UAACC U G CGUUAU CA CAGUG...GGU-3'@LB@ UGUUAU UGAUUUA AGGAA GUAA GACA GC AGCGCCCA@LB@ ||:||| |:|||:| ||||| |||| |||| || |:||||||@LB@ ACGAUA AUUAAGU UCCUU CAUU CUGU CG UUGCGGGU@LB@3'-UUU...UUAAC CGUC UUUU UAUACCU CG AGCGA...ACG-5'@LB@ | |@LB@ 78 24@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -32.6914 kcal/mol@LB@Unfolding Energy - mRNA 9.23779 kcal/mol@LB@Unfolding Energy - sRNA 13.6641 kcal/mol@LB@@LB@Position - mRNA 169 -- 214@LB@Position - sRNA 25 -- 77@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 25 -- 31@LB@ |
98 |
0.003129 |
0.1114 |
b0357 |
frmR |
-9.19 |
0.168108 |
184 -- 207 |
25 -- 48 |
regulator protein that represses frmRAB operon |
|
_____________183______________________208\n_____________|________________________|\n5'-CUG...CAUGC________A__U___AA_______GUACU...CCG-3'\n______________AGAUGAUG_GG_GCG__AUGCCCA\n______________|||::||:_||_|||__|:|||||\n______________UCUGUUAU_CC_CGC__UGCGGGU\n3'-UUU...UUCAU________A__U___GU_______AGCGA...ACG-5'\n_____________|________________________|\n_____________49_______________________24\n |
201 -- 207 |
25 -- 31 |
-27.7971 kcal/mol |
6.33291 kcal/mol |
12.271 kcal/mol |
183 208@LB@ | |@LB@5'-CUG...CAUGC A U AA GUACU...CCG-3'@LB@ AGAUGAUG GG GCG AUGCCCA@LB@ |||::||: || ||| |:|||||@LB@ UCUGUUAU CC CGC UGCGGGU@LB@3'-UUU...UUCAU A U GU AGCGA...ACG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -9.19 kcal/mol@LB@Hybridization Energy -27.7971 kcal/mol@LB@Unfolding Energy - mRNA 6.33291 kcal/mol@LB@Unfolding Energy - sRNA 12.271 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 25 -- 31@LB@ |
113 |
0.00365 |
0.1131 |
b3154 |
yhbP |
-10.91 |
0.065979 |
249 -- 297 |
26 -- 85 |
UPF0306 family protein |
|
_____________248___________________________________________________________298\n_____________|_____________________________________________________________|\n5'-AAA...AUGUU____C___GUG_______C_____________________ACUC____U____U_______UUU-3'\n______________GUCA_UUG___UGUGCAG___________AGGAAG_GGGA_____UGG_GCGC_AAUGCCU\n______________:|||_|||___|:|||||___________||||||_::||_____|||_||||_||:|||:\n______________UAGU_AAC___AUACGUC___________UCCUUC_UUCU_____ACC_CGCG_UUGCGGG\n3'-UUU...AUGCU____U___ACG_______AUUAAGUUUUU______A____GUUAU___U____________UAGCG...ACG-5'\n_____________|_____________________________________________________________|\n_____________86____________________________________________________________25\n |
260 -- 266 |
68 -- 74 |
-42.816 kcal/mol |
18.2405 kcal/mol |
13.6657 kcal/mol |
248 298@LB@ | |@LB@5'-AAA...AUGUU C GUG C ACUC U U UUU-3'@LB@ GUCA UUG UGUGCAG AGGAAG GGGA UGG GCGC AAUGCCU@LB@ :||| ||| |:||||| |||||| ::|| ||| |||| ||:|||:@LB@ UAGU AAC AUACGUC UCCUUC UUCU ACC CGCG UUGCGGG@LB@3'-UUU...AUGCU U ACG AUUAAGUUUUU A GUUAU U UAGCG...ACG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -42.816 kcal/mol@LB@Unfolding Energy - mRNA 18.2405 kcal/mol@LB@Unfolding Energy - sRNA 13.6657 kcal/mol@LB@@LB@Position - mRNA 249 -- 297@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 68 -- 74@LB@ |
86 |
0.002341 |
0.09591 |
b0144 |
gluQ |
-7.21 |
0.411815 |
221 -- 264 |
26 -- 65 |
glutamyl-Q tRNA(Asp) synthetase |
|
_____________220__________________________________________265\n_____________|____________________________________________|\n5'-AGA...UUUUU__________AU__C__ACAC_______AUU__C___UU_____CCUCU...UGA-3'\n______________GUUCAAAGAG__GA_AG____ACAGUAU___GG_CGC__CGCCC\n______________:||||||:|:__||_||____|||:|||___:|_|||__|||||\n______________UAAGUUUUUU__CU_UC____UGUUAUA___UC_GCG__GCGGG\n3'-UUU...GUCAU__________C______AUUC_______CC_______UU_____UAGCG...ACG-5'\n_____________|____________________________________________|\n_____________66___________________________________________25\n |
242 -- 248 |
40 -- 46 |
-28.4973 kcal/mol |
7.75098 kcal/mol |
13.5387 kcal/mol |
220 265@LB@ | |@LB@5'-AGA...UUUUU AU C ACAC AUU C UU CCUCU...UGA-3'@LB@ GUUCAAAGAG GA AG ACAGUAU GG CGC CGCCC@LB@ :||||||:|: || || |||:||| :| ||| |||||@LB@ UAAGUUUUUU CU UC UGUUAUA UC GCG GCGGG@LB@3'-UUU...GUCAU C AUUC CC UU UAGCG...ACG-5'@LB@ | |@LB@ 66 25@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -28.4973 kcal/mol@LB@Unfolding Energy - mRNA 7.75098 kcal/mol@LB@Unfolding Energy - sRNA 13.5387 kcal/mol@LB@@LB@Position - mRNA 221 -- 264@LB@Position - sRNA 26 -- 65@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 40 -- 46@LB@ |
39 |
0.0003198 |
0.02889 |
b3960 |
argH |
-9.38 |
0.152930 |
179 -- 221 |
28 -- 64 |
argininosuccinate lyase |
|
_____________178__________________________________________222\n_____________|____________________________________________|\n5'-GCA...UGAAU_______U_____AACAG___UAU____CUU_____________UUUAC...AUA-3'\n______________UUCAAAA_AAGGA_____AGU___GGCA___UGGGGCG_GGCGU\n______________|||||||_|||||_____|||___|:||___|||:|||_::||:\n______________AAGUUUU_UUCCU_____UCA___CUGU___ACCUCGC_UUGCG\n3'-UUU...UCAUU_____________________UU_____UAU_______G_____GGUAG...ACG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
210 -- 216 |
34 -- 40 |
-30.4591 kcal/mol |
8.02766 kcal/mol |
13.054 kcal/mol |
178 222@LB@ | |@LB@5'-GCA...UGAAU U AACAG UAU CUU UUUAC...AUA-3'@LB@ UUCAAAA AAGGA AGU GGCA UGGGGCG GGCGU@LB@ ||||||| ||||| ||| |:|| |||:||| ::||:@LB@ AAGUUUU UUCCU UCA CUGU ACCUCGC UUGCG@LB@3'-UUU...UCAUU UU UAU G GGUAG...ACG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -30.4591 kcal/mol@LB@Unfolding Energy - mRNA 8.02766 kcal/mol@LB@Unfolding Energy - sRNA 13.054 kcal/mol@LB@@LB@Position - mRNA 179 -- 221@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 34 -- 40@LB@ |
134 |
0.004994 |
0.1313 |
b1518 |
lsrG |
-14.53 |
0.006358 |
14 -- 66 |
30 -- 79 |
autoinducer-2 (AI-2) degrading protein LsrG |
|
_____________13_______________________________________________________67\n_____________|________________________________________________________|\n5'-GAG...GGAAA____________GCUA____UC____CGCUUCU____UG_________________AUUUU...AAG-3'\n______________UGUGCUG_GCAG____UCGA__AGGG_______GGUG____GAUAUGGGGCGUAAU\n______________||||||:_||||____||:|__|:||_______:||:____:||||||:|||:||:\n______________ACACGAU_CGUC____AGUU__UUCC_______UCAU____UUAUACCUCGCGUUG\n3'-UUU...AGUUA_______A____AUUA____UU____U__________UCUG_______________CGGGU...ACG-5'\n_____________|________________________________________________________|\n_____________80_______________________________________________________29\n |
58 -- 64 |
32 -- 38 |
-43.6874 kcal/mol |
15.7058 kcal/mol |
13.4555 kcal/mol |
13 67@LB@ | |@LB@5'-GAG...GGAAA GCUA UC CGCUUCU UG AUUUU...AAG-3'@LB@ UGUGCUG GCAG UCGA AGGG GGUG GAUAUGGGGCGUAAU@LB@ ||||||: |||| ||:| |:|| :||: :||||||:|||:||:@LB@ ACACGAU CGUC AGUU UUCC UCAU UUAUACCUCGCGUUG@LB@3'-UUU...AGUUA A AUUA UU U UCUG CGGGU...ACG-5'@LB@ | |@LB@ 80 29@LB@@LB@@LB@Energy -14.53 kcal/mol@LB@Hybridization Energy -43.6874 kcal/mol@LB@Unfolding Energy - mRNA 15.7058 kcal/mol@LB@Unfolding Energy - sRNA 13.4555 kcal/mol@LB@@LB@Position - mRNA 14 -- 66@LB@Position - sRNA 30 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 32 -- 38@LB@ |
153 |
0.00596 |
0.1368 |
b3892 |
fdoI |
-11.89 |
0.036676 |
181 -- 200 |
31 -- 53 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________180_____________________201\n_____________|_______________________|\n5'-CCA...ACGAA___A___________________AUGAA...UGG-3'\n______________GAG_AAGACGA___GGAGCGCAA\n______________:||_|||||:|___|||||||||\n______________UUC_UUCUGUU___CCUCGCGUU\n3'-UUU...UUUCC___A_______AUA_________GCGGG...ACG-5'\n_____________|_______________________|\n_____________54______________________30\n |
194 -- 200 |
31 -- 37 |
-24.6235 kcal/mol |
2.95491 kcal/mol |
9.77014 kcal/mol |
180 201@LB@ | |@LB@5'-CCA...ACGAA A AUGAA...UGG-3'@LB@ GAG AAGACGA GGAGCGCAA@LB@ :|| |||||:| |||||||||@LB@ UUC UUCUGUU CCUCGCGUU@LB@3'-UUU...UUUCC A AUA GCGGG...ACG-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -24.6235 kcal/mol@LB@Unfolding Energy - mRNA 2.95491 kcal/mol@LB@Unfolding Energy - sRNA 9.77014 kcal/mol@LB@@LB@Position - mRNA 181 -- 200@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 31 -- 37@LB@ |
5 |
2.521e-06 |
0.001776 |
b3365 |
nirB |
-15.77 |
0.002536 |
156 -- 206 |
35 -- 88 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________155____________________________________________________207\n_____________|______________________________________________________|\n5'-AUC...GUUGC_______UUAA__G__G_________________A__UC_______AAAU____AAAGU...UUA-3'\n______________UGAAUCG_____G_UA_GCGGUAAU__AGAAAAG_AA__GAGGCAA____GAGC\n______________:|||||:_____|_||_||:|||||__|:|||||_||__:||:|||____||||\n______________GCUUAGU_____C_AU_CGUCAUUA__UUUUUUC_UU__UUCUGUU____CUCG\n3'-UUU...AGCAU_______UAACA_G__A________AG_______C__CA_______AUAC____CGUUG...ACG-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________34\n |
192 -- 198 |
43 -- 49 |
-31.7984 kcal/mol |
7.74851 kcal/mol |
8.27555 kcal/mol |
155 207@LB@ | |@LB@5'-AUC...GUUGC UUAA G G A UC AAAU AAAGU...UUA-3'@LB@ UGAAUCG G UA GCGGUAAU AGAAAAG AA GAGGCAA GAGC@LB@ :|||||: | || ||:||||| |:||||| || :||:||| ||||@LB@ GCUUAGU C AU CGUCAUUA UUUUUUC UU UUCUGUU CUCG@LB@3'-UUU...AGCAU UAACA G A AG C CA AUAC CGUUG...ACG-5'@LB@ | |@LB@ 89 34@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -31.7984 kcal/mol@LB@Unfolding Energy - mRNA 7.74851 kcal/mol@LB@Unfolding Energy - sRNA 8.27555 kcal/mol@LB@@LB@Position - mRNA 156 -- 206@LB@Position - sRNA 35 -- 88@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 43 -- 49@LB@ |