73 |
0.001217 |
0.05856 |
b1702 |
ppsA |
-8.47 |
0.118779 |
124 -- 132 |
50 -- 58 |
phosphoenolpyruvate synthase |
|
_____________123_______133\n_____________|_________|\n5'-UAU...UUUUC_________AAUAU...AAA-3'\n______________AUCCGGUUA\n______________|||||:|||\n______________UAGGCUAAU\n3'-AUU...CGGUU_________GCACU...AUG-5'\n_____________|_________|\n_____________59________49\n |
126 -- 132 |
50 -- 56 |
-10.3571 kcal/mol |
1.58803 kcal/mol |
0.317553 kcal/mol |
123 133@LB@ | |@LB@5'-UAU...UUUUC AAUAU...AAA-3'@LB@ AUCCGGUUA@LB@ |||||:|||@LB@ UAGGCUAAU@LB@3'-AUU...CGGUU GCACU...AUG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -10.3571 kcal/mol@LB@Unfolding Energy - mRNA 1.58803 kcal/mol@LB@Unfolding Energy - sRNA 0.317553 kcal/mol@LB@@LB@Position - mRNA 124 -- 132@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 50 -- 56@LB@ |
171 |
0.00718 |
0.1466 |
b1708 |
nlpC |
-9.44 |
0.065343 |
288 -- 298 |
49 -- 59 |
putative C40 clan peptidase lipoprotein |
|
_____________287_________299\n_____________|___________|\n5'-AAA...UUUCU___________CG-3'\n______________GAUUCGAUUAC\n______________:||:|||||||\n______________UUAGGCUAAUG\n3'-AUU...UCGGU___________CACUU...AUG-5'\n_____________|___________|\n_____________60__________48\n |
292 -- 298 |
49 -- 55 |
-11.5278 kcal/mol |
1.77565 kcal/mol |
0.318405 kcal/mol |
287 299@LB@ | |@LB@5'-AAA...UUUCU CG-3'@LB@ GAUUCGAUUAC@LB@ :||:|||||||@LB@ UUAGGCUAAUG@LB@3'-AUU...UCGGU CACUU...AUG-5'@LB@ | |@LB@ 60 48@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -11.5278 kcal/mol@LB@Unfolding Energy - mRNA 1.77565 kcal/mol@LB@Unfolding Energy - sRNA 0.318405 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 49 -- 59@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 49 -- 55@LB@ |
46 |
0.0005017 |
0.03778 |
b1713 |
pheT |
-7.80 |
0.173677 |
95 -- 107 |
17 -- 29 |
phenylalanine tRNA synthetase beta subunit |
|
_____________94____________108\n_____________|_____________|\n5'-CUG...GAUGG_____________GACUA...ACG-3'\n______________GGAUGGAGCGUCU\n______________:|||:||:|:|||\n______________UCUAUCUUGUAGA\n3'-AUU...GACUU_____________AUGGA...AUG-5'\n_____________|_____________|\n_____________30____________16\n |
100 -- 106 |
18 -- 24 |
-17.5948 kcal/mol |
5.55471 kcal/mol |
4.26164 kcal/mol |
94 108@LB@ | |@LB@5'-CUG...GAUGG GACUA...ACG-3'@LB@ GGAUGGAGCGUCU@LB@ :|||:||:|:|||@LB@ UCUAUCUUGUAGA@LB@3'-AUU...GACUU AUGGA...AUG-5'@LB@ | |@LB@ 30 16@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -17.5948 kcal/mol@LB@Unfolding Energy - mRNA 5.55471 kcal/mol@LB@Unfolding Energy - sRNA 4.26164 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 17 -- 29@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 18 -- 24@LB@ |
113 |
0.003703 |
0.1147 |
b1728 |
ydjM |
-2.69 |
0.937889 |
161 -- 167 |
1 -- 7 |
inner membrane protein regulated by LexA |
|
_____________160_____168\n_____________|_______|\n5'-CGC...UAAAA_______ACUGU...AUA-3'\n______________AUCCUAU\n______________|:||||:\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-7.15055 kcal/mol |
2.44298 kcal/mol |
2.03949 kcal/mol |
160 168@LB@ | |@LB@5'-CGC...UAAAA ACUGU...AUA-3'@LB@ AUCCUAU@LB@ |:||||:@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -2.69 kcal/mol@LB@Hybridization Energy -7.15055 kcal/mol@LB@Unfolding Energy - mRNA 2.44298 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
121 |
0.004045 |
0.1176 |
b1738 |
chbB |
-6.64 |
0.311906 |
2 -- 15 |
34 -- 50 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________1_________________16\n_____________|_________________|\n__________5'-A_________________AUAAC...CGG-3'\n______________AUGUGAAG___AGGGUC\n______________|:||||||___|:||||\n______________UGCACUUC___UUCCAG\n3'-AUU...GCUAA________AUU______ACUUU...AUG-5'\n_____________|_________________|\n_____________51________________33\n |
3 -- 9 |
43 -- 49 |
-17.276 kcal/mol |
2.8636 kcal/mol |
7.69543 kcal/mol |
1 16@LB@ | |@LB@ 5'-A AUAAC...CGG-3'@LB@ AUGUGAAG AGGGUC@LB@ |:|||||| |:||||@LB@ UGCACUUC UUCCAG@LB@3'-AUU...GCUAA AUU ACUUU...AUG-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -17.276 kcal/mol@LB@Unfolding Energy - mRNA 2.8636 kcal/mol@LB@Unfolding Energy - sRNA 7.69543 kcal/mol@LB@@LB@Position - mRNA 2 -- 15@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 43 -- 49@LB@ |
75 |
0.001328 |
0.06227 |
b1748 |
astC |
-8.39 |
0.124654 |
121 -- 127 |
1 -- 7 |
succinylornithine transaminase PLP-dependent |
|
_____________120_____128\n_____________|_______|\n5'-UCA...CACGA_______AAUCU...UGU-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.9071 kcal/mol |
1.50434 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UCA...CACGA AAUCU...UGU-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -11.9071 kcal/mol@LB@Unfolding Energy - mRNA 1.50434 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
15 |
5.569e-05 |
0.01183 |
b1761 |
gdhA |
-12.26 |
0.008568 |
280 -- 294 |
40 -- 56 |
glutamate dehydrogenase NADP-specific |
|
_____________279_______________295\n_____________|_________________|\n5'-UAA...GCAAG___UU____________UGACCA-3'\n______________CCG____CGUGAAGUAA\n______________|||____||||||||||\n______________GGC____GCACUUCAUU\n3'-AUU...GUUUA___UAAU__________UUCCA...AUG-5'\n_____________|_________________|\n_____________57________________39\n |
288 -- 294 |
40 -- 46 |
-17.1153 kcal/mol |
1.5283 kcal/mol |
3.34823 kcal/mol |
279 295@LB@ | |@LB@5'-UAA...GCAAG UU UGACCA-3'@LB@ CCG CGUGAAGUAA@LB@ ||| ||||||||||@LB@ GGC GCACUUCAUU@LB@3'-AUU...GUUUA UAAU UUCCA...AUG-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -17.1153 kcal/mol@LB@Unfolding Energy - mRNA 1.5283 kcal/mol@LB@Unfolding Energy - sRNA 3.34823 kcal/mol@LB@@LB@Position - mRNA 280 -- 294@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 40 -- 46@LB@ |
181 |
0.007802 |
0.1516 |
b1797 |
yeaR |
-7.07 |
0.254063 |
142 -- 149 |
2 -- 9 |
DUF1971 family protein nitrate-inducible |
|
_____________141______150\n_____________|________|\n5'-UGC...CAGGC________AAACG...AAG-3'\n______________GUACCCUG\n______________|||||||:\n______________CAUGGGAU\n3'-AUU...GGAGA________G-5'\n_____________|________|\n_____________10_______1\n |
143 -- 149 |
2 -- 8 |
-12.2602 kcal/mol |
3.09143 kcal/mol |
2.12684 kcal/mol |
141 150@LB@ | |@LB@5'-UGC...CAGGC AAACG...AAG-3'@LB@ GUACCCUG@LB@ |||||||:@LB@ CAUGGGAU@LB@3'-AUU...GGAGA G-5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.07 kcal/mol@LB@Hybridization Energy -12.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.09143 kcal/mol@LB@Unfolding Energy - sRNA 2.12684 kcal/mol@LB@@LB@Position - mRNA 142 -- 149@LB@Position - sRNA 2 -- 9@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 2 -- 8@LB@ |
101 |
0.00315 |
0.1097 |
b1822 |
rlmA |
-7.85 |
0.169074 |
182 -- 190 |
1 -- 9 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________181_______191\n_____________|_________|\n5'-AAG...CUUUA_________CGGAG...GGU-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
184 -- 190 |
1 -- 7 |
-13.1594 kcal/mol |
3.20778 kcal/mol |
2.12872 kcal/mol |
181 191@LB@ | |@LB@5'-AAG...CUUUA CGGAG...GGU-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -13.1594 kcal/mol@LB@Unfolding Energy - mRNA 3.20778 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 182 -- 190@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |