149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
107 |
0.001753 |
0.07531 |
pa3707 |
N/A |
-15.86 |
0.005654 |
190 -- 241 |
38 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189____________________________________________________242\n_____________|______________________________________________________|\n5'-GCC...UUCAA_____GA_______ACC__G____C___CC___________A___A__C_____CAAGC...AAG-3'\n______________AGUCU__GGCUGUG___GU_UC_C_GCU__ACCGGC_GAUC_UCG_CG_ACCAG\n______________||||:__|:|||:|___||_||_|_|||__||||||_||||_|||_||_|||||\n______________UCAGG__CUGACGC___CA_AG_G_CGA__UGGCCG_CUAG_AGC_GC_UGGUC\n3'-UUU...ACUUC______________ACC__G__A_U___A_______A_________________AACUC...GUU-5'\n_____________|______________________________________________________|\n_____________86_____________________________________________________37\n |
197 -- 203 |
74 -- 80 |
-51.3304 kcal/mol |
16.52 kcal/mol |
18.9581 kcal/mol |
189 242@LB@ | |@LB@5'-GCC...UUCAA GA ACC G C CC A A C CAAGC...AAG-3'@LB@ AGUCU GGCUGUG GU UC C GCU ACCGGC GAUC UCG CG ACCAG@LB@ ||||: |:|||:| || || | ||| |||||| |||| ||| || |||||@LB@ UCAGG CUGACGC CA AG G CGA UGGCCG CUAG AGC GC UGGUC@LB@3'-UUU...ACUUC ACC G A U A A AACUC...GUU-5'@LB@ | |@LB@ 86 37@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -51.3304 kcal/mol@LB@Unfolding Energy - mRNA 16.52 kcal/mol@LB@Unfolding Energy - sRNA 18.9581 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 38 -- 85@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 74 -- 80@LB@ |
132 |
0.002652 |
0.0912 |
pa0364 |
N/A |
-15.84 |
0.005742 |
174 -- 193 |
100 -- 122 |
oxidoreductase |
|
_____________173_____________________194\n_____________|_______________________|\n5'-AUU...AGCCC_______CC______________UGCAU...UGG-3'\n______________GAAGCCG____UAGCCUGA_GAG\n______________:||:|||____||||||||_|||\n______________UUUUGGC____AUCGGACU_CUC\n3'-UUU...CCAGU_______ACUA________A___CUCUA...GUU-5'\n_____________|_______________________|\n_____________123_____________________99\n |
184 -- 190 |
104 -- 110 |
-22.8122 kcal/mol |
4.73034 kcal/mol |
2.24976 kcal/mol |
173 194@LB@ | |@LB@5'-AUU...AGCCC CC UGCAU...UGG-3'@LB@ GAAGCCG UAGCCUGA GAG@LB@ :||:||| |||||||| |||@LB@ UUUUGGC AUCGGACU CUC@LB@3'-UUU...CCAGU ACUA A CUCUA...GUU-5'@LB@ | |@LB@ 123 99@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -22.8122 kcal/mol@LB@Unfolding Energy - mRNA 4.73034 kcal/mol@LB@Unfolding Energy - sRNA 2.24976 kcal/mol@LB@@LB@Position - mRNA 174 -- 193@LB@Position - sRNA 100 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
120 |
0.002089 |
0.07999 |
pa3670 |
N/A |
-15.68 |
0.006401 |
170 -- 246 |
44 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________________________247\n_____________|__________________________________________________________________________________________|\n5'-GCU...CGGUC________AGAA____GA___________________________GAAAC_____UU_______U___GCCGG____UU_______G___UGGCG...GGC-3'\n______________GACC_UGA____AGCC__AUGAGGGG__________GAGU_CGAU_____GCGUG__GUC_CUC_GGC_____GCUG__GCUGAUC_CGC\n______________:|||_|||____||||__||||||:|__________||||_|||:_____|||||__|||_|||_:||_____:|:|__|||||||_|||\n______________UUGG_ACU____UCGG__UACUCCUC__________CUCA_GCUG_____CGCAC__CAG_GAG_UCG_____UGGC__CGACUAG_GCG\n3'-UUU...AGUUU____C___AA______AC________UAUUAGACUU____G____A_________C____A_______AA________________A___CUGGU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________121________________________________________________________________________________________43\n |
236 -- 242 |
48 -- 54 |
-64.9835 kcal/mol |
25.9985 kcal/mol |
23.3102 kcal/mol |
169 247@LB@ | |@LB@5'-GCU...CGGUC AGAA GA GAAAC UU U GCCGG UU G UGGCG...GGC-3'@LB@ GACC UGA AGCC AUGAGGGG GAGU CGAU GCGUG GUC CUC GGC GCUG GCUGAUC CGC@LB@ :||| ||| |||| ||||||:| |||| |||: ||||| ||| ||| :|| :|:| ||||||| |||@LB@ UUGG ACU UCGG UACUCCUC CUCA GCUG CGCAC CAG GAG UCG UGGC CGACUAG GCG@LB@3'-UUU...AGUUU C AA AC UAUUAGACUU G A C A AA A CUGGU...GUU-5'@LB@ | |@LB@ 121 43@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -64.9835 kcal/mol@LB@Unfolding Energy - mRNA 25.9985 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 170 -- 246@LB@Position - sRNA 44 -- 120@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 48 -- 54@LB@ |
72 |
0.0007723 |
0.0493 |
pa2659 |
N/A |
-15.67 |
0.006436 |
157 -- 217 |
75 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________156____________________________________________________________218\n_____________|______________________________________________________________|\n5'-UUG...UCUGC_______C__A____AACAC__U___UUCCCAC_____GAU__CCA______AA________CCUGU...UGC-3'\n______________AAACCGU_GA__AGC_____GA_UGA_______GGAGA___UC___UGAAGA__CUGACUGC\n______________|||||||_||__|||_____||_|||_______|||||___||___||||||__|:||||||\n______________UUUGGCA_CU__UCG_____CU_ACU_______CCUCU___AG___ACUUCU__GGCUGACG\n3'-UUU...CAGUU__________AA___GA_____________________AUU___________CA________CACCC...GUU-5'\n_____________|______________________________________________________________|\n_____________122____________________________________________________________74\n |
211 -- 217 |
75 -- 81 |
-37.728 kcal/mol |
9.87154 kcal/mol |
12.1884 kcal/mol |
156 218@LB@ | |@LB@5'-UUG...UCUGC C A AACAC U UUCCCAC GAU CCA AA CCUGU...UGC-3'@LB@ AAACCGU GA AGC GA UGA GGAGA UC UGAAGA CUGACUGC@LB@ ||||||| || ||| || ||| ||||| || |||||| |:||||||@LB@ UUUGGCA CU UCG CU ACU CCUCU AG ACUUCU GGCUGACG@LB@3'-UUU...CAGUU AA GA AUU CA CACCC...GUU-5'@LB@ | |@LB@ 122 74@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -37.728 kcal/mol@LB@Unfolding Energy - mRNA 9.87154 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 157 -- 217@LB@Position - sRNA 75 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
190 |
0.005086 |
0.123 |
pa0591 |
N/A |
-15.37 |
0.007942 |
156 -- 173 |
100 -- 120 |
protein ApaG |
|
_____________155___________________174\n_____________|_____________________|\n5'-UCA...CAGGC_____________________ACACU...CGG-3'\n______________AAUCGU___UAGUCUGAUGAG\n______________||:|||___|||:||||||||\n______________UUGGCA___AUCGGACUACUC\n3'-UUU...AGUUU______CUA____________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
167 -- 173 |
100 -- 106 |
-22.6098 kcal/mol |
4.99015 kcal/mol |
2.24919 kcal/mol |
155 174@LB@ | |@LB@5'-UCA...CAGGC ACACU...CGG-3'@LB@ AAUCGU UAGUCUGAUGAG@LB@ ||:||| |||:||||||||@LB@ UUGGCA AUCGGACUACUC@LB@3'-UUU...AGUUU CUA CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -15.37 kcal/mol@LB@Hybridization Energy -22.6098 kcal/mol@LB@Unfolding Energy - mRNA 4.99015 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 156 -- 173@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 100 -- 106@LB@ |