| 111 |
0.003511 |
0.1114 |
b0077 |
ilvI |
-11.05 |
0.061087 |
188 -- 206 |
36 -- 52 |
acetolactate synthase 3 large subunit |
|
_____________187_________________207\n_____________|___________________|\n5'-AAA...CAAAC__________GCC______AUGUU...UUU-3'\n______________AGUGAGGCAG___AUGGAG\n______________|||:||:||:___||||||\n______________UCAUUCUGUU___UACCUC\n3'-UUU...UUCCU__________A________GCGUU...ACG-5'\n_____________|___________________|\n_____________53__________________35\n |
191 -- 197 |
43 -- 49 |
-19.2253 kcal/mol |
4.72052 kcal/mol |
3.43382 kcal/mol |
187 207@LB@ | |@LB@5'-AAA...CAAAC GCC AUGUU...UUU-3'@LB@ AGUGAGGCAG AUGGAG@LB@ |||:||:||: ||||||@LB@ UCAUUCUGUU UACCUC@LB@3'-UUU...UUCCU A GCGUU...ACG-5'@LB@ | |@LB@ 53 35@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -19.2253 kcal/mol@LB@Unfolding Energy - mRNA 4.72052 kcal/mol@LB@Unfolding Energy - sRNA 3.43382 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 36 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 4 |
1.28e-06 |
0.001128 |
b0884 |
infA |
-17.67 |
0.000535 |
178 -- 264 |
1 -- 71 |
translation initiation factor IF-1 |
|
_____________177_______________________________________________________________________________________265\n_____________|_________________________________________________________________________________________|\n5'-UUU...UUACG________ACCCC______UUAGAUGGCCAA_____________U__AA_____G__A___________AA______CUAA____A___UCCGC...CUG-3'\n______________GUAGUGAU_____AGAGGA____________AG_AAGACAAUAU_GA__UGCAA_GU_CCGUU_CUUGA__CGUUGC____UACC_UGU\n______________|:|||:||_____|:||||____________||_||||||||||_||__:||||_|:_||:|:_|||||__||||||____:|||_||:\n______________CGUCAUUA_____UUUCCU____________UC_UUCUGUUAUA_CU__GCGUU_CG_GGUAG_GAACU__GCAACG____GUGG_ACG\n3'-UUU...CGAUA________AGUUU____________________A__________C__C______G________C_____________UAA_________-5'\n_____________|________________________________________________________________________________________|\n_____________72_______________________________________________________________________________________1\n |
214 -- 220 |
40 -- 46 |
-55.7119 kcal/mol |
17.4656 kcal/mol |
20.5786 kcal/mol |
177 265@LB@ | |@LB@5'-UUU...UUACG ACCCC UUAGAUGGCCAA U AA G A AA CUAA A UCCGC...CUG-3'@LB@ GUAGUGAU AGAGGA AG AAGACAAUAU GA UGCAA GU CCGUU CUUGA CGUUGC UACC UGU@LB@ |:|||:|| |:|||| || |||||||||| || :|||| |: ||:|: ||||| |||||| :||| ||:@LB@ CGUCAUUA UUUCCU UC UUCUGUUAUA CU GCGUU CG GGUAG GAACU GCAACG GUGG ACG@LB@3'-UUU...CGAUA AGUUU A C C G C UAA -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -17.67 kcal/mol@LB@Hybridization Energy -55.7119 kcal/mol@LB@Unfolding Energy - mRNA 17.4656 kcal/mol@LB@Unfolding Energy - sRNA 20.5786 kcal/mol@LB@@LB@Position - mRNA 178 -- 264@LB@Position - sRNA 1 -- 71@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 135 |
0.00505 |
0.1318 |
b0918 |
kdsB |
-10.75 |
0.072320 |
21 -- 54 |
1 -- 42 |
3-deoxy-manno-octulosonate cytidylyltransferase |
|
_____________20_________________________________________55\n_____________|__________________________________________|\n5'-CCC...GGAAC______U____U______________AAU_____________CCGGU...UUC-3'\n______________UAUGGA___CA_CGUC___UGCUUGA_____CAUU_GCCUGC\n______________||||||___||_||:|___:||||||_____||||_:|||||\n______________AUACCU___GU_GCGG___GCGAACU_____GUAA_UGGACG\n3'-UUU...CUGUU______CGC__U____GUA_______GCAAC____G______-5'\n_____________|_________________________________________|\n_____________43________________________________________1\n |
35 -- 41 |
17 -- 23 |
-30.6746 kcal/mol |
4.6323 kcal/mol |
15.293 kcal/mol |
20 55@LB@ | |@LB@5'-CCC...GGAAC U U AAU CCGGU...UUC-3'@LB@ UAUGGA CA CGUC UGCUUGA CAUU GCCUGC@LB@ |||||| || ||:| :|||||| |||| :|||||@LB@ AUACCU GU GCGG GCGAACU GUAA UGGACG@LB@3'-UUU...CUGUU CGC U GUA GCAAC G -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -30.6746 kcal/mol@LB@Unfolding Energy - mRNA 4.6323 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 21 -- 54@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 66 |
0.001137 |
0.05992 |
b0076 |
leuO |
-9.90 |
0.116504 |
167 -- 195 |
35 -- 60 |
global transcription factor |
|
_____________166_____________________________196\n_____________|_______________________________|\n5'-UAU...AUAAG___________UAAGUGU_____________UAAGU...UGA-3'\n______________GGAAAGGGAGU_______GACA__GUGGAGU\n______________::|||||:|||_______||||__:|||||:\n______________UUUUUCCUUCA_______CUGU__UACCUCG\n3'-UUU...UAAGU___________UU_________UA_______CGUUG...ACG-5'\n_____________|_______________________________|\n_____________61______________________________34\n |
189 -- 195 |
35 -- 41 |
-23.1584 kcal/mol |
8.98888 kcal/mol |
4.23745 kcal/mol |
166 196@LB@ | |@LB@5'-UAU...AUAAG UAAGUGU UAAGU...UGA-3'@LB@ GGAAAGGGAGU GACA GUGGAGU@LB@ ::|||||:||| |||| :|||||:@LB@ UUUUUCCUUCA CUGU UACCUCG@LB@3'-UUU...UAAGU UU UA CGUUG...ACG-5'@LB@ | |@LB@ 61 34@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.1584 kcal/mol@LB@Unfolding Energy - mRNA 8.98888 kcal/mol@LB@Unfolding Energy - sRNA 4.23745 kcal/mol@LB@@LB@Position - mRNA 167 -- 195@LB@Position - sRNA 35 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 54 |
0.0007167 |
0.04676 |
b0147 |
ligT |
-15.11 |
0.004153 |
163 -- 244 |
1 -- 81 |
2'-5' RNA ligase |
|
_____________162_________________________________________________________________________________________245\n_____________|___________________________________________________________________________________________|\n5'-CCA...GCCAC_____A__AUC___________UAACC_______CCU__C____CU__AC_____________CUUU___AUC__________________AGAAA...CGG-3'\n______________AUUGU_GC___GCGGUAAUUCA_______GAGUG___CA_AUGU__GA__CGCAACGUCUGUU____GCU___GAC_______UUACCUGC\n______________|||||_||___||:||||||||_______:|||:___||_||:|__||__|||||||:|::|:____|||___|||_______|:||||||\n______________UAACA_CG___CGUCAUUAAGU_______UUCAU___GU_UAUA__CU__GCGUUGCGGGUAG____CGA___CUG_______AGUGGACG\n3'-UUU...UUAGU________AUA___________UUUUUCC_____UCU_______C___C_____________________A_____CAACGUA________-5'\n_____________|__________________________________________________________________________________________|\n_____________82_________________________________________________________________________________________1\n |
238 -- 244 |
1 -- 7 |
-55.1488 kcal/mol |
19.3452 kcal/mol |
20.694 kcal/mol |
162 245@LB@ | |@LB@5'-CCA...GCCAC A AUC UAACC CCU C CU AC CUUU AUC AGAAA...CGG-3'@LB@ AUUGU GC GCGGUAAUUCA GAGUG CA AUGU GA CGCAACGUCUGUU GCU GAC UUACCUGC@LB@ ||||| || ||:|||||||| :|||: || ||:| || |||||||:|::|: ||| ||| |:||||||@LB@ UAACA CG CGUCAUUAAGU UUCAU GU UAUA CU GCGUUGCGGGUAG CGA CUG AGUGGACG@LB@3'-UUU...UUAGU AUA UUUUUCC UCU C C A CAACGUA -5'@LB@ | |@LB@ 82 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -55.1488 kcal/mol@LB@Unfolding Energy - mRNA 19.3452 kcal/mol@LB@Unfolding Energy - sRNA 20.694 kcal/mol@LB@@LB@Position - mRNA 163 -- 244@LB@Position - sRNA 1 -- 81@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 143 |
0.005544 |
0.1363 |
b2936 |
loiP |
-13.30 |
0.014839 |
83 -- 152 |
1 -- 41 |
Phe-Phe periplasmic metalloprotease OM lipoprotein; low salt-inducible; Era-binding heat shock protein |
|
_____________82______________________________________________________________________153\n_____________|_______________________________________________________________________|\n5'-UUG...CUCGC___UU______UCUACU_______C____GCGCUUUUCCUUAUAC__AGACUGA____C____________AAACG...AAG-3'\n______________AUG__GCGCAA______CGCCCGU_CGCU________________UG_______GCGU_G_AUUCACCUGC\n______________|||__||||||______|||||:|_||||________________||_______:|||_|_||||||||||\n______________UAC__CGCGUU______GCGGGUA_GCGA________________AC_______UGCA_C_UAAGUGGACG\n3'-UUU...UGUUA___CU_____________________________________________________A_G__________-5'\n_____________|______________________________________________________________________|\n_____________42_____________________________________________________________________1\n |
146 -- 152 |
1 -- 7 |
-44.3719 kcal/mol |
15.78 kcal/mol |
15.2922 kcal/mol |
82 153@LB@ | |@LB@5'-UUG...CUCGC UU UCUACU C GCGCUUUUCCUUAUAC AGACUGA C AAACG...AAG-3'@LB@ AUG GCGCAA CGCCCGU CGCU UG GCGU G AUUCACCUGC@LB@ ||| |||||| |||||:| |||| || :||| | ||||||||||@LB@ UAC CGCGUU GCGGGUA GCGA AC UGCA C UAAGUGGACG@LB@3'-UUU...UGUUA CU A G -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -13.30 kcal/mol@LB@Hybridization Energy -44.3719 kcal/mol@LB@Unfolding Energy - mRNA 15.78 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 83 -- 152@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 1 |
1.057e-08 |
3.724e-05 |
b0889 |
lrp |
-13.58 |
0.012310 |
166 -- 227 |
21 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________165_______________________________________________________________228\n_____________|_________________________________________________________________|\n5'-GUG...UCAGA___GAG____________AUAC__A_________AUAA___U__AUA___AGAA________G__AAAGA...AGC-3'\n______________CAG_____UAGGGAAGGA____AG_GAGACAAUA____UGG_AG___GCA____GCGCCC_U_GC\n______________|||_____:|:::|||||____||_:||||||||____|||_||___|||____:|||||_|_||\n______________GUC_____GUUUUUUCCU____UC_UUCUGUUAU____ACC_UC___CGU____UGCGGG_A_CG\n3'-UUU...GAUAC___AUUAA________________A___________________G_______________U_G__AACUG...ACG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________20\n |
191 -- 197 |
41 -- 47 |
-39.3483 kcal/mol |
8.89245 kcal/mol |
16.878 kcal/mol |
165 228@LB@ | |@LB@5'-GUG...UCAGA GAG AUAC A AUAA U AUA AGAA G AAAGA...AGC-3'@LB@ CAG UAGGGAAGGA AG GAGACAAUA UGG AG GCA GCGCCC U GC@LB@ ||| :|:::||||| || :|||||||| ||| || ||| :||||| | ||@LB@ GUC GUUUUUUCCU UC UUCUGUUAU ACC UC CGU UGCGGG A CG@LB@3'-UUU...GAUAC AUUAA A G U G AACUG...ACG-5'@LB@ | |@LB@ 71 20@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -39.3483 kcal/mol@LB@Unfolding Energy - mRNA 8.89245 kcal/mol@LB@Unfolding Energy - sRNA 16.878 kcal/mol@LB@@LB@Position - mRNA 166 -- 227@LB@Position - sRNA 21 -- 70@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 134 |
0.004994 |
0.1313 |
b1518 |
lsrG |
-14.53 |
0.006358 |
14 -- 66 |
30 -- 79 |
autoinducer-2 (AI-2) degrading protein LsrG |
|
_____________13_______________________________________________________67\n_____________|________________________________________________________|\n5'-GAG...GGAAA____________GCUA____UC____CGCUUCU____UG_________________AUUUU...AAG-3'\n______________UGUGCUG_GCAG____UCGA__AGGG_______GGUG____GAUAUGGGGCGUAAU\n______________||||||:_||||____||:|__|:||_______:||:____:||||||:|||:||:\n______________ACACGAU_CGUC____AGUU__UUCC_______UCAU____UUAUACCUCGCGUUG\n3'-UUU...AGUUA_______A____AUUA____UU____U__________UCUG_______________CGGGU...ACG-5'\n_____________|________________________________________________________|\n_____________80_______________________________________________________29\n |
58 -- 64 |
32 -- 38 |
-43.6874 kcal/mol |
15.7058 kcal/mol |
13.4555 kcal/mol |
13 67@LB@ | |@LB@5'-GAG...GGAAA GCUA UC CGCUUCU UG AUUUU...AAG-3'@LB@ UGUGCUG GCAG UCGA AGGG GGUG GAUAUGGGGCGUAAU@LB@ ||||||: |||| ||:| |:|| :||: :||||||:|||:||:@LB@ ACACGAU CGUC AGUU UUCC UCAU UUAUACCUCGCGUUG@LB@3'-UUU...AGUUA A AUUA UU U UCUG CGGGU...ACG-5'@LB@ | |@LB@ 80 29@LB@@LB@@LB@Energy -14.53 kcal/mol@LB@Hybridization Energy -43.6874 kcal/mol@LB@Unfolding Energy - mRNA 15.7058 kcal/mol@LB@Unfolding Energy - sRNA 13.4555 kcal/mol@LB@@LB@Position - mRNA 14 -- 66@LB@Position - sRNA 30 -- 79@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 32 -- 38@LB@ |
