22 |
0.0006536 |
0.09021 |
b1245 |
oppC |
-8.46 |
0.045181 |
270 -- 288 |
37 -- 58 |
oligopeptide ABC transporter permease |
|
_____________269____________________289\n_____________|______________________|\n5'-GGU...GGCGC_________________C____GUCGA...UUA-3'\n______________AGCUUGU___GGCAGGA_GCAC\n______________|:||||:___:|||:||_||||\n______________UUGAACG___UCGUUCU_CGUG\n3'-UUU...CUACU_______AAU_______U____AAUUU...CAA-5'\n_____________|______________________|\n_____________59_____________________36\n |
277 -- 283 |
42 -- 48 |
-22.602 kcal/mol |
7.90039 kcal/mol |
6.24354 kcal/mol |
269 289@LB@ | |@LB@5'-GGU...GGCGC C GUCGA...UUA-3'@LB@ AGCUUGU GGCAGGA GCAC@LB@ |:||||: :|||:|| ||||@LB@ UUGAACG UCGUUCU CGUG@LB@3'-UUU...CUACU AAU U AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -22.602 kcal/mol@LB@Unfolding Energy - mRNA 7.90039 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 270 -- 288@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 42 -- 48@LB@ |
126 |
0.01159 |
0.2964 |
b3693 |
dgoK |
-8.44 |
0.045823 |
138 -- 160 |
34 -- 54 |
2-oxo-3-deoxygalactonate kinase |
|
_____________137_____________________161\n_____________|_______________________|\n5'-CAG...GGCGA___GGCA_______C________CCAUG...CAG-3'\n______________UGC____GAGCAGG_GGCGCUUA\n______________|||____:||||:|_:||:||||\n______________ACG____UUCGUUC_UCGUGAAU\n3'-UUU...UUUGA___AA_________U________UUUUU...CAA-5'\n_____________|_______________________|\n_____________55______________________33\n |
154 -- 160 |
34 -- 40 |
-23.026 kcal/mol |
8.41527 kcal/mol |
6.17478 kcal/mol |
137 161@LB@ | |@LB@5'-CAG...GGCGA GGCA C CCAUG...CAG-3'@LB@ UGC GAGCAGG GGCGCUUA@LB@ ||| :||||:| :||:||||@LB@ ACG UUCGUUC UCGUGAAU@LB@3'-UUU...UUUGA AA U UUUUU...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -23.026 kcal/mol@LB@Unfolding Energy - mRNA 8.41527 kcal/mol@LB@Unfolding Energy - sRNA 6.17478 kcal/mol@LB@@LB@Position - mRNA 138 -- 160@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 34 -- 40@LB@ |
52 |
0.002466 |
0.1527 |
b3527 |
yhjJ |
-8.40 |
0.046956 |
207 -- 220 |
25 -- 41 |
putative periplasmic M16 family chaperone |
|
_____________206_______________221\n_____________|_________________|\n5'-CUC...UGCAG_________________ACUUU...GGC-3'\n______________GGCAC___AAAAAUUCG\n______________:||||___|||||||||\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
214 -- 220 |
25 -- 31 |
-13.4116 kcal/mol |
3.36563 kcal/mol |
1.64839 kcal/mol |
206 221@LB@ | |@LB@5'-CUC...UGCAG ACUUU...GGC-3'@LB@ GGCAC AAAAAUUCG@LB@ :|||| |||||||||@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -13.4116 kcal/mol@LB@Unfolding Energy - mRNA 3.36563 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 207 -- 220@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 25 -- 31@LB@ |
98 |
0.007325 |
0.239 |
b4171 |
miaA |
-8.40 |
0.046782 |
42 -- 58 |
5 -- 24 |
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase |
|
_____________41___________________59\n_____________|____________________|\n5'-GAA...GUGGA____________________AGCGA...UUU-3'\n______________UUGCAC___GAAAUCUGAUG\n______________||:|||___|||||||||||\n______________AAUGUG___CUUUAGACUAC\n3'-UUU...UAAGC______GUC___________ACAA-5'\n_____________|____________________|\n_____________25___________________4\n |
52 -- 58 |
5 -- 11 |
-19.996 kcal/mol |
4.00751 kcal/mol |
7.58501 kcal/mol |
41 59@LB@ | |@LB@5'-GAA...GUGGA AGCGA...UUU-3'@LB@ UUGCAC GAAAUCUGAUG@LB@ ||:||| |||||||||||@LB@ AAUGUG CUUUAGACUAC@LB@3'-UUU...UAAGC GUC ACAA-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -19.996 kcal/mol@LB@Unfolding Energy - mRNA 4.00751 kcal/mol@LB@Unfolding Energy - sRNA 7.58501 kcal/mol@LB@@LB@Position - mRNA 42 -- 58@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 5 -- 11@LB@ |
85 |
0.005692 |
0.2157 |
b4052 |
dnaB |
-8.38 |
0.047402 |
89 -- 103 |
26 -- 40 |
replicative DNA helicase |
|
_____________88______________104\n_____________|_______________|\n5'-UGC...CCACC_______U_______AAUUC...CGG-3'\n______________GUGCUUG_GAAAUUC\n______________|::|||:_:||||||\n______________CGUGAAU_UUUUAAG\n3'-UUU...UUCUU_______U_______CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
97 -- 103 |
26 -- 32 |
-13.045 kcal/mol |
3.01413 kcal/mol |
1.64811 kcal/mol |
88 104@LB@ | |@LB@5'-UGC...CCACC U AAUUC...CGG-3'@LB@ GUGCUUG GAAAUUC@LB@ |::|||: :||||||@LB@ CGUGAAU UUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -13.045 kcal/mol@LB@Unfolding Energy - mRNA 3.01413 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 89 -- 103@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 26 -- 32@LB@ |
91 |
0.006547 |
0.2317 |
b1323 |
tyrR |
-8.26 |
0.051378 |
202 -- 222 |
3 -- 23 |
aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
|
_____________201___________________223\n_____________|_____________________|\n5'-UCG...UCCCA______U________UU____AAGAC...UUG-3'\n______________UGCGUC_GGAAGUCU__UGUG\n______________|:|::|_||||:|||__||||\n______________AUGUGG_CCUUUAGA__ACAC\n3'-UUU...AAGCA______U________CU____AA-5'\n_____________|_____________________|\n_____________24____________________2\n |
209 -- 215 |
10 -- 16 |
-19.6247 kcal/mol |
3.79223 kcal/mol |
7.5769 kcal/mol |
201 223@LB@ | |@LB@5'-UCG...UCCCA U UU AAGAC...UUG-3'@LB@ UGCGUC GGAAGUCU UGUG@LB@ |:|::| ||||:||| ||||@LB@ AUGUGG CCUUUAGA ACAC@LB@3'-UUU...AAGCA U CU AA-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -19.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.79223 kcal/mol@LB@Unfolding Energy - sRNA 7.5769 kcal/mol@LB@@LB@Position - mRNA 202 -- 222@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 10 -- 16@LB@ |
151 |
0.0157 |
0.3349 |
b0586 |
entF |
-8.26 |
0.051334 |
189 -- 199 |
37 -- 47 |
enterobactin synthase multienzyme complex component ATP-dependent |
|
_____________188_________200\n_____________|___________|\n5'-CCC...CAGUU___________AAUGA...UUG-3'\n______________GCAGGAGGCAC\n______________|||:||:||||\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
193 -- 199 |
37 -- 43 |
-17.6877 kcal/mol |
4.1913 kcal/mol |
5.23944 kcal/mol |
188 200@LB@ | |@LB@5'-CCC...CAGUU AAUGA...UUG-3'@LB@ GCAGGAGGCAC@LB@ |||:||:||||@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -17.6877 kcal/mol@LB@Unfolding Energy - mRNA 4.1913 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
11 |
0.0001294 |
0.03789 |
b3687 |
ibpA |
-8.25 |
0.051487 |
69 -- 81 |
26 -- 38 |
heat shock chaperone |
|
_____________68____________82\n_____________|_____________|\n5'-AAC...AUAAG_____________AUUUC...GCU-3'\n______________GCUUGAAAAGUUC\n______________:|||:||||:|||\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
75 -- 81 |
26 -- 32 |
-13.0918 kcal/mol |
3.40592 kcal/mol |
1.43364 kcal/mol |
68 82@LB@ | |@LB@5'-AAC...AUAAG AUUUC...GCU-3'@LB@ GCUUGAAAAGUUC@LB@ :|||:||||:|||@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -13.0918 kcal/mol@LB@Unfolding Energy - mRNA 3.40592 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 69 -- 81@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 26 -- 32@LB@ |
174 |
0.01992 |
0.3669 |
b1098 |
tmk |
-8.25 |
0.051647 |
183 -- 196 |
29 -- 42 |
thymidylate kinase |
|
_____________182____________197\n_____________|______________|\n5'-UAA...UCUGA______________AAAAA...GCG-3'\n______________AAGUGCUUAAGGAA\n______________|||::|||||::||\n______________UUCGUGAAUUUUUU\n3'-UUU...CGUUC______________AAGCA...CAA-5'\n_____________|______________|\n_____________43_____________28\n |
190 -- 196 |
29 -- 35 |
-11.8447 kcal/mol |
1.97362 kcal/mol |
1.62369 kcal/mol |
182 197@LB@ | |@LB@5'-UAA...UCUGA AAAAA...GCG-3'@LB@ AAGUGCUUAAGGAA@LB@ |||::|||||::||@LB@ UUCGUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -11.8447 kcal/mol@LB@Unfolding Energy - mRNA 1.97362 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 183 -- 196@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 29 -- 35@LB@ |
198 |
0.02375 |
0.3864 |
b3946 |
fsaB |
-8.18 |
0.053967 |
105 -- 117 |
26 -- 40 |
fructose-6-phosphate aldolase 2 |
|
_____________104_____________118\n_____________|_______________|\n5'-UGG...AUCAU_______________CGUAA...CUG-3'\n______________GCAC__GAAGAAUUC\n______________||||__:||:|||||\n______________CGUG__UUUUUUAAG\n3'-UUU...UUCUU____AA_________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
111 -- 117 |
26 -- 32 |
-11.851 kcal/mol |
2.02524 kcal/mol |
1.64811 kcal/mol |
104 118@LB@ | |@LB@5'-UGG...AUCAU CGUAA...CUG-3'@LB@ GCAC GAAGAAUUC@LB@ |||| :||:|||||@LB@ CGUG UUUUUUAAG@LB@3'-UUU...UUCUU AA CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.18 kcal/mol@LB@Hybridization Energy -11.851 kcal/mol@LB@Unfolding Energy - mRNA 2.02524 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 105 -- 117@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 26 -- 32@LB@ |