| 130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 185 |
0.02285 |
0.4113 |
b0920 |
elyC |
-11.60 |
0.104081 |
77 -- 89 |
66 -- 78 |
envelope biogenesis factor; DUF218 superfamily protein |
|
_____________76____________90\n_____________|_____________|\n5'-UUG...CUCCA_____________ACGUU...GCC-3'\n______________CCGGUUGGCUAAG\n______________||||:||||||||\n______________GGCCGACCGAUUC\n3'-UUU...UCGUG_____________AUUAU...GCG-5'\n_____________|_____________|\n_____________79____________65\n |
83 -- 89 |
66 -- 72 |
-24.3939 kcal/mol |
5.56302 kcal/mol |
7.23276 kcal/mol |
76 90@LB@ | |@LB@5'-UUG...CUCCA ACGUU...GCC-3'@LB@ CCGGUUGGCUAAG@LB@ ||||:||||||||@LB@ GGCCGACCGAUUC@LB@3'-UUU...UCGUG AUUAU...GCG-5'@LB@ | |@LB@ 79 65@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -24.3939 kcal/mol@LB@Unfolding Energy - mRNA 5.56302 kcal/mol@LB@Unfolding Energy - sRNA 7.23276 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 66 -- 78@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 105 |
0.01075 |
0.3439 |
b2457 |
eutM |
-13.65 |
0.047053 |
202 -- 241 |
1 -- 59 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________201__________________________________________________________242\n_____________|____________________________________________________________|\n5'-UAU...CACAA________UU_____G____A___AAA_________________________________ACUGA...UUA-3'\n______________UGGAAGCA_____AG_AAUG_UCG______________CC_CGGGG_____CCUGGUUGC\n______________||||||||_____||_||||_|||______________||_||:||_____||||:|:||\n______________ACCUUCGU_____UC_UUAC_AGC______________GG_GCUCC_____GGACUAGCG\n3'-UUU...UUAUG________UACAC__G________ACGAAAGUCCAAGA__C_____CAGAA_________-5'\n_____________|___________________________________________________________|\n_____________60__________________________________________________________1\n |
235 -- 241 |
1 -- 7 |
-38.4359 kcal/mol |
10.6717 kcal/mol |
14.1095 kcal/mol |
201 242@LB@ | |@LB@5'-UAU...CACAA UU G A AAA ACUGA...UUA-3'@LB@ UGGAAGCA AG AAUG UCG CC CGGGG CCUGGUUGC@LB@ |||||||| || |||| ||| || ||:|| ||||:|:||@LB@ ACCUUCGU UC UUAC AGC GG GCUCC GGACUAGCG@LB@3'-UUU...UUAUG UACAC G ACGAAAGUCCAAGA C CAGAA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -38.4359 kcal/mol@LB@Unfolding Energy - mRNA 10.6717 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 202 -- 241@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 161 |
0.02011 |
0.4072 |
b2820 |
recB |
-12.55 |
0.072418 |
202 -- 213 |
37 -- 48 |
exonuclease V (RecBCD complex) beta subunit |
|
_____________201__________214\n_____________|____________|\n5'-GGC...AAGAA____________CCGAG...UUG-3'\n______________UGAGUGAUGUCG\n______________||||::||||||\n______________ACUCGUUACAGC\n3'-UUU...GUUAC____________ACGAA...GCG-5'\n_____________|____________|\n_____________49___________36\n |
207 -- 213 |
37 -- 43 |
-16.4196 kcal/mol |
2.71715 kcal/mol |
1.1567 kcal/mol |
201 214@LB@ | |@LB@5'-GGC...AAGAA CCGAG...UUG-3'@LB@ UGAGUGAUGUCG@LB@ ||||::||||||@LB@ ACUCGUUACAGC@LB@3'-UUU...GUUAC ACGAA...GCG-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.4196 kcal/mol@LB@Unfolding Energy - mRNA 2.71715 kcal/mol@LB@Unfolding Energy - sRNA 1.1567 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 15 |
0.001024 |
0.2294 |
b2822 |
recC |
-16.38 |
0.016046 |
234 -- 264 |
37 -- 63 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________233______________________________265\n_____________|________________________________|\n5'-AGU...UGGAC___________GUU_________UUAU_____AACGC...AGA-3'\n______________GUGCUGGAAGC___GAUG_GAGU____UGUCG\n______________:|:||||||||___:|||_|||:____|||||\n______________UAUGACCUUCG___UUAC_CUCG____ACAGC\n3'-UUU...UUCAU__________________A____UU_______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
238 -- 244 |
53 -- 59 |
-30.8262 kcal/mol |
11.1454 kcal/mol |
3.30267 kcal/mol |
233 265@LB@ | |@LB@5'-AGU...UGGAC GUU UUAU AACGC...AGA-3'@LB@ GUGCUGGAAGC GAUG GAGU UGUCG@LB@ :|:|||||||| :||| |||: |||||@LB@ UAUGACCUUCG UUAC CUCG ACAGC@LB@3'-UUU...UUCAU A UU ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -30.8262 kcal/mol@LB@Unfolding Energy - mRNA 11.1454 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 234 -- 264@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 151 |
0.01843 |
0.4072 |
b4028 |
yjbG |
-13.08 |
0.058794 |
282 -- 297 |
40 -- 55 |
extracellular polysaccharide export OMA protein |
|
_____________281______________298\n_____________|________________|\n5'-AAA...UGUUC_______GC_______AGG-3'\n______________AGCAAUG__AGCAGUG\n______________|||||||__||||:||\n______________UCGUUAC__UCGUUAC\n3'-UUU...GACCU_______AC_______AGCAC...GCG-5'\n_____________|________________|\n_____________56_______________39\n |
291 -- 297 |
40 -- 46 |
-18.8155 kcal/mol |
2.52344 kcal/mol |
3.20849 kcal/mol |
281 298@LB@ | |@LB@5'-AAA...UGUUC GC AGG-3'@LB@ AGCAAUG AGCAGUG@LB@ ||||||| ||||:||@LB@ UCGUUAC UCGUUAC@LB@3'-UUU...GACCU AC AGCAC...GCG-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -18.8155 kcal/mol@LB@Unfolding Energy - mRNA 2.52344 kcal/mol@LB@Unfolding Energy - sRNA 3.20849 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 147 |
0.01756 |
0.3998 |
b2204 |
napH |
-8.83 |
0.283291 |
175 -- 212 |
36 -- 85 |
ferredoxin-type protein |
|
_____________174________________________________________________213\n_____________|__________________________________________________|\n5'-CAC...CAUUA_______________________GG___________________A_____AAACG...UCU-3'\n______________CC_GC_UUCGGCUGGCUG___GA____GGAA_CAAUG___GCAA__UCGU\n______________||_||_::|||||||||:___:|____||||_|||||___||||__||||\n______________GG_CG_GGGCCGACCGAU___UU____CCUU_GUUAC___CGUU__AGCA\n______3'-UUUUC__U__U____________UCA__AUGA____C_____ACU____AC____CGAAA...GCG-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________35\n |
183 -- 189 |
69 -- 75 |
-37.9033 kcal/mol |
14.1609 kcal/mol |
14.9108 kcal/mol |
174 213@LB@ | |@LB@5'-CAC...CAUUA GG A AAACG...UCU-3'@LB@ CC GC UUCGGCUGGCUG GA GGAA CAAUG GCAA UCGU@LB@ || || ::|||||||||: :| |||| ||||| |||| ||||@LB@ GG CG GGGCCGACCGAU UU CCUU GUUAC CGUU AGCA@LB@ 3'-UUUUC U U UCA AUGA C ACU AC CGAAA...GCG-5'@LB@ | |@LB@ 86 35@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -37.9033 kcal/mol@LB@Unfolding Energy - mRNA 14.1609 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 175 -- 212@LB@Position - sRNA 36 -- 85@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 132 |
0.01454 |
0.37 |
b1083 |
flgL |
-7.54 |
0.428067 |
272 -- 293 |
37 -- 57 |
flagellar hook-filament junction protein |
|
_____________271____________________294\n_____________|______________________|\n5'-UUG...UGGAU______CG_C__ACA_______ACGGGUA-3'\n______________GAAGUA__G_GA___GAUGUCG\n______________||||:|__|_||___:||||||\n______________CUUCGU__C_CU___UUACAGC\n3'-UUU...AUGAC______UA_A__CG________ACGAA...GCG-5'\n_____________|______________________|\n_____________58_____________________36\n |
287 -- 293 |
37 -- 43 |
-16.4529 kcal/mol |
5.68525 kcal/mol |
3.2267 kcal/mol |
271 294@LB@ | |@LB@5'-UUG...UGGAU CG C ACA ACGGGUA-3'@LB@ GAAGUA G GA GAUGUCG@LB@ ||||:| | || :||||||@LB@ CUUCGU C CU UUACAGC@LB@3'-UUU...AUGAC UA A CG ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -7.54 kcal/mol@LB@Hybridization Energy -16.4529 kcal/mol@LB@Unfolding Energy - mRNA 5.68525 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
