| 114 |
0.001956 |
0.07883 |
pa1616 |
N/A |
-7.83 |
0.436748 |
16 -- 25 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________15_________26\n_____________|__________|\n5'-GGC...ACGGC__________CUUUC...AGA-3'\n______________AGCCUGAUGG\n______________|||||||||:\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
19 -- 25 |
101 -- 107 |
-16.0192 kcal/mol |
6.07491 kcal/mol |
2.11196 kcal/mol |
15 26@LB@ | |@LB@5'-GGC...ACGGC CUUUC...AGA-3'@LB@ AGCCUGAUGG@LB@ |||||||||:@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -16.0192 kcal/mol@LB@Unfolding Energy - mRNA 6.07491 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 16 -- 25@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 128 |
0.00255 |
0.0912 |
pa3463 |
N/A |
-7.51 |
0.486845 |
225 -- 240 |
104 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________224_________________241\n_____________|___________________|\n5'-UCG...UGCUC_______ACAC________ACAAC...CGC-3'\n______________GAAGCCG_______CCUGA\n______________:||:|||_______|||||\n______________UUUUGGC_______GGACU\n3'-UUU...CCAGU_______ACUAAUC_____ACUCC...GUU-5'\n_____________|___________________|\n_____________123_________________103\n |
225 -- 231 |
116 -- 122 |
-12.6194 kcal/mol |
2.87159 kcal/mol |
2.24249 kcal/mol |
224 241@LB@ | |@LB@5'-UCG...UGCUC ACAC ACAAC...CGC-3'@LB@ GAAGCCG CCUGA@LB@ :||:||| |||||@LB@ UUUUGGC GGACU@LB@3'-UUU...CCAGU ACUAAUC ACUCC...GUU-5'@LB@ | |@LB@ 123 103@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -12.6194 kcal/mol@LB@Unfolding Energy - mRNA 2.87159 kcal/mol@LB@Unfolding Energy - sRNA 2.24249 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 104 -- 122@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 192 |
0.005234 |
0.1243 |
pa1840 |
N/A |
-6.31 |
0.681723 |
125 -- 149 |
99 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________124_________________________150\n_____________|___________________________|\n5'-GCA...GCGCC_______GC_______G_____G____UCUUG...ACG-3'\n______________GAGAUCG__GA__GGC_CUGGU_GAGG\n______________:|:|:||__||__:||_|||:|_||||\n______________UUUUGGC__CU__UCG_GACUA_CUCC\n3'-UUU...CCAGU_______A___AA______________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
125 -- 131 |
116 -- 122 |
-20.2979 kcal/mol |
11.7389 kcal/mol |
2.25034 kcal/mol |
124 150@LB@ | |@LB@5'-GCA...GCGCC GC G G UCUUG...ACG-3'@LB@ GAGAUCG GA GGC CUGGU GAGG@LB@ :|:|:|| || :|| |||:| ||||@LB@ UUUUGGC CU UCG GACUA CUCC@LB@3'-UUU...CCAGU A AA UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -6.31 kcal/mol@LB@Hybridization Energy -20.2979 kcal/mol@LB@Unfolding Energy - mRNA 11.7389 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 125 -- 149@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 94 |
0.001308 |
0.06355 |
pa1587 |
lpdG |
-9.92 |
0.185926 |
282 -- 296 |
75 -- 91 |
2-oxoglutarate dehydrogenase complex dihydrolipoyl dehydrogenase |
|
_____________281_______________297\n_____________|_________________|\n5'-GUG...UGGGC____________C____AUCG-3'\n______________CUGAAGA__CCG_CUGC\n______________|||||||__|||_||||\n______________GACUUCU__GGC_GACG\n3'-UUU...UAUUA_______CA___U____CACCC...GUU-5'\n_____________|_________________|\n_____________92________________74\n |
282 -- 288 |
85 -- 91 |
-18.2743 kcal/mol |
2.47066 kcal/mol |
5.88668 kcal/mol |
281 297@LB@ | |@LB@5'-GUG...UGGGC C AUCG-3'@LB@ CUGAAGA CCG CUGC@LB@ ||||||| ||| ||||@LB@ GACUUCU GGC GACG@LB@3'-UUU...UAUUA CA U CACCC...GUU-5'@LB@ | |@LB@ 92 74@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2743 kcal/mol@LB@Unfolding Energy - mRNA 2.47066 kcal/mol@LB@Unfolding Energy - sRNA 5.88668 kcal/mol@LB@@LB@Position - mRNA 282 -- 296@LB@Position - sRNA 75 -- 91@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 85 -- 91@LB@ |
| 12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 78 |
0.000864 |
0.05078 |
pa4263 |
rplC |
-13.85 |
0.021626 |
50 -- 71 |
101 -- 122 |
50S ribosomal protein L3 |
|
_____________49_______________________72\n_____________|________________________|\n5'-CGA...CGGAU________C_______G_______AGCUC...AUC-3'\n______________AAAACCGU_GAU__GC_CUGAUGA\n______________||||||||_|||__||_|||||||\n______________UUUUGGCA_CUA__CG_GACUACU\n3'-UUU...CCAGU____________AU__________CCUCU...GUU-5'\n_____________|________________________|\n_____________123______________________100\n |
65 -- 71 |
101 -- 107 |
-22.5702 kcal/mol |
6.47727 kcal/mol |
2.24427 kcal/mol |
49 72@LB@ | |@LB@5'-CGA...CGGAU C G AGCUC...AUC-3'@LB@ AAAACCGU GAU GC CUGAUGA@LB@ |||||||| ||| || |||||||@LB@ UUUUGGCA CUA CG GACUACU@LB@3'-UUU...CCAGU AU CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -22.5702 kcal/mol@LB@Unfolding Energy - mRNA 6.47727 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 119 |
0.002082 |
0.07999 |
pa4053 |
ribE |
-9.84 |
0.193218 |
284 -- 298 |
103 -- 117 |
6 7-dimethyl-8-ribityllumazine synthase |
|
_____________283_____________299\n_____________|_______________|\n5'-UGC...UUCGU_____AA________CA-3'\n______________CGUGG__AGCCUGGU\n______________||||:__||||||:|\n______________GCACU__UCGGACUA\n3'-UUU...UUUUG_____AA________CUCCU...GUU-5'\n_____________|_______________|\n_____________118_____________102\n |
292 -- 298 |
103 -- 109 |
-17.5695 kcal/mol |
5.50648 kcal/mol |
2.23013 kcal/mol |
283 299@LB@ | |@LB@5'-UGC...UUCGU AA CA-3'@LB@ CGUGG AGCCUGGU@LB@ ||||: ||||||:|@LB@ GCACU UCGGACUA@LB@3'-UUU...UUUUG AA CUCCU...GUU-5'@LB@ | |@LB@ 118 102@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -17.5695 kcal/mol@LB@Unfolding Energy - mRNA 5.50648 kcal/mol@LB@Unfolding Energy - sRNA 2.23013 kcal/mol@LB@@LB@Position - mRNA 284 -- 298@LB@Position - sRNA 103 -- 117@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 103 -- 109@LB@ |
