180 |
0.01774 |
0.3104 |
b0593 |
entC |
-14.03 |
0.023631 |
112 -- 128 |
4 -- 19 |
isochorismate synthase 1 |
|
_____________111_______________129\n_____________|_________________|\n5'-GGC...AGAGU_____U___________GCUUU...CAG-3'\n______________UGACA_AGUGCGCGUUU\n______________|:|||_|:|||||||:|\n______________AUUGU_UUACGCGCAGA\n3'-UUU...CUACU_________________AAG-5'\n_____________|_________________|\n_____________20________________3\n |
122 -- 128 |
4 -- 10 |
-18.4725 kcal/mol |
3.19872 kcal/mol |
1.2406 kcal/mol |
111 129@LB@ | |@LB@5'-GGC...AGAGU U GCUUU...CAG-3'@LB@ UGACA AGUGCGCGUUU@LB@ |:||| |:|||||||:|@LB@ AUUGU UUACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -18.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.19872 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 112 -- 128@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 4 -- 10@LB@ |
100 |
0.01004 |
0.3104 |
b3166 |
truB |
-9.42 |
0.151044 |
113 -- 128 |
5 -- 18 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________112______________129\n_____________|________________|\n5'-GGC...GGUUG__G________AU___AAACC...AAC-3'\n______________AA_GGAUGCGC__GUC\n______________||_::||||||__|||\n______________UU_UUUACGCG__CAG\n3'-UUU...UACUA__G_____________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
117 -- 123 |
8 -- 14 |
-15.4757 kcal/mol |
4.82661 kcal/mol |
1.2243 kcal/mol |
112 129@LB@ | |@LB@5'-GGC...GGUUG G AU AAACC...AAC-3'@LB@ AA GGAUGCGC GUC@LB@ || ::|||||| |||@LB@ UU UUUACGCG CAG@LB@3'-UUU...UACUA G AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -15.4757 kcal/mol@LB@Unfolding Energy - mRNA 4.82661 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 8 -- 14@LB@ |
53 |
0.004896 |
0.3024 |
b3790 |
wecD |
-9.15 |
0.167607 |
125 -- 139 |
7 -- 21 |
TDP-fucosamine acetyltransferase |
|
_____________124_____________140\n_____________|_______________|\n5'-CUG...GGCUC_________G_____AAGCG...UGA-3'\n______________GAUGACGAG_GUGUG\n______________|||:||:|:_|:|:|\n______________CUAUUGUUU_CGCGC\n3'-UUU...UACUA_________A_____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
126 -- 132 |
14 -- 20 |
-15.9636 kcal/mol |
5.57309 kcal/mol |
1.24179 kcal/mol |
124 140@LB@ | |@LB@5'-CUG...GGCUC G AAGCG...UGA-3'@LB@ GAUGACGAG GUGUG@LB@ |||:||:|: |:|:|@LB@ CUAUUGUUU CGCGC@LB@3'-UUU...UACUA A AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -15.9636 kcal/mol@LB@Unfolding Energy - mRNA 5.57309 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 125 -- 139@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 14 -- 20@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
199 |
0.01944 |
0.3104 |
b3657 |
yicJ |
-13.22 |
0.033173 |
129 -- 161 |
8 -- 45 |
putative transporter |
|
_____________128_____________________________________162\n_____________|_______________________________________|\n5'-CAG...GAAUA_________CA_____________UU____A________UAUCG...UGU-3'\n______________UUCG_CUCU_____CAGGGAUGGU____AC_AAAUGCGU\n______________|||:_||||_____||||||||:|____||_|||||||:\n______________AAGU_GAGA_____GUCCCUACUA____UG_UUUACGCG\n3'-UUU...UUUUA____A____CUUAA__________CUAU___________CAGAAAG-5'\n_____________|_______________________________________|\n_____________46______________________________________7\n |
155 -- 161 |
8 -- 14 |
-30.3918 kcal/mol |
7.7216 kcal/mol |
9.45195 kcal/mol |
128 162@LB@ | |@LB@5'-CAG...GAAUA CA UU A UAUCG...UGU-3'@LB@ UUCG CUCU CAGGGAUGGU AC AAAUGCGU@LB@ |||: |||| ||||||||:| || |||||||:@LB@ AAGU GAGA GUCCCUACUA UG UUUACGCG@LB@3'-UUU...UUUUA A CUUAA CUAU CAGAAAG-5'@LB@ | |@LB@ 46 7@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -30.3918 kcal/mol@LB@Unfolding Energy - mRNA 7.7216 kcal/mol@LB@Unfolding Energy - sRNA 9.45195 kcal/mol@LB@@LB@Position - mRNA 129 -- 161@LB@Position - sRNA 8 -- 45@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 8 -- 14@LB@ |
161 |
0.01501 |
0.3104 |
b1709 |
btuD |
-8.32 |
0.227073 |
129 -- 137 |
1 -- 9 |
vitamin B12 ABC transporter ATPase |
|
_____________128_______138\n_____________|_________|\n5'-GCA...AUCCA_________CCCGG...GGC-3'\n______________GCGUUUUUC\n______________||||:||||\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
131 -- 137 |
1 -- 7 |
-11.771 kcal/mol |
2.3321 kcal/mol |
1.11751 kcal/mol |
128 138@LB@ | |@LB@5'-GCA...AUCCA CCCGG...GGC-3'@LB@ GCGUUUUUC@LB@ ||||:||||@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -11.771 kcal/mol@LB@Unfolding Energy - mRNA 2.3321 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 129 -- 137@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 1 -- 7@LB@ |
9 |
0.000195 |
0.07335 |
b1830 |
prc |
-15.09 |
0.015143 |
131 -- 161 |
7 -- 38 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________130______________________________162\n_____________|________________________________|\n5'-CGA...UCCAG___________U___UCUU____U________CAGAA...CGG-3'\n______________CUGAAUUCGGG_AUG____UGAU__GUGCGCG\n______________||||||||:||_|||____|:|:__:||||||\n______________GACUUAAGUCC_UAC____AUUG__UACGCGC\n3'-UUU...GUAGA___________C___UACU____UU_______AGAAAG-5'\n_____________|________________________________|\n_____________39_______________________________6\n |
155 -- 161 |
7 -- 13 |
-31.7028 kcal/mol |
7.25259 kcal/mol |
9.35859 kcal/mol |
130 162@LB@ | |@LB@5'-CGA...UCCAG U UCUU U CAGAA...CGG-3'@LB@ CUGAAUUCGGG AUG UGAU GUGCGCG@LB@ ||||||||:|| ||| |:|: :||||||@LB@ GACUUAAGUCC UAC AUUG UACGCGC@LB@3'-UUU...GUAGA C UACU UU AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -31.7028 kcal/mol@LB@Unfolding Energy - mRNA 7.25259 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 131 -- 161@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 7 -- 13@LB@ |
185 |
0.01831 |
0.3104 |
b3164 |
pnp |
-7.42 |
0.310961 |
131 -- 137 |
8 -- 14 |
polynucleotide phosphorylase/polyadenylase |
|
_____________130_____138\n_____________|_______|\n5'-AGC...GCGAG_______AGAAG...UUA-3'\n______________GAUGCGC\n______________:||||||\n______________UUACGCG\n3'-UUU...AUUGU_______CAGAAAG-5'\n_____________|_______|\n_____________15______7\n |
131 -- 137 |
8 -- 14 |
-10.1419 kcal/mol |
2.24272 kcal/mol |
0.481462 kcal/mol |
130 138@LB@ | |@LB@5'-AGC...GCGAG AGAAG...UUA-3'@LB@ GAUGCGC@LB@ :||||||@LB@ UUACGCG@LB@3'-UUU...AUUGU CAGAAAG-5'@LB@ | |@LB@ 15 7@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -10.1419 kcal/mol@LB@Unfolding Energy - mRNA 2.24272 kcal/mol@LB@Unfolding Energy - sRNA 0.481462 kcal/mol@LB@@LB@Position - mRNA 131 -- 137@LB@Position - sRNA 8 -- 14@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 8 -- 14@LB@ |
112 |
0.01125 |
0.3104 |
b2515 |
ispG |
-10.24 |
0.110168 |
132 -- 140 |
4 -- 12 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
_____________131_______141\n_____________|_________|\n5'-CGU...CAGGU_________GACCC...UGA-3'\n______________UGCGCGUCU\n______________|||||||||\n______________ACGCGCAGA\n3'-UUU...UGUUU_________AAG-5'\n_____________|_________|\n_____________13________3\n |
134 -- 140 |
4 -- 10 |
-16.4542 kcal/mol |
5.04928 kcal/mol |
1.16019 kcal/mol |
131 141@LB@ | |@LB@5'-CGU...CAGGU GACCC...UGA-3'@LB@ UGCGCGUCU@LB@ |||||||||@LB@ ACGCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -16.4542 kcal/mol@LB@Unfolding Energy - mRNA 5.04928 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 132 -- 140@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 4 -- 10@LB@ |
27 |
0.001549 |
0.1943 |
b0440 |
hupB |
-11.81 |
0.059023 |
134 -- 149 |
5 -- 20 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________133______________150\n_____________|________________|\n5'-CGC...CUGAU_____UGC________CGUAC...CUG-3'\n______________AUAAC___UGCGCGUU\n______________|||||___|||||||:\n______________UAUUG___ACGCGCAG\n3'-UUU...ACUAC_____UUU________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
143 -- 149 |
5 -- 11 |
-15.9939 kcal/mol |
2.93365 kcal/mol |
1.24804 kcal/mol |
133 150@LB@ | |@LB@5'-CGC...CUGAU UGC CGUAC...CUG-3'@LB@ AUAAC UGCGCGUU@LB@ ||||| |||||||:@LB@ UAUUG ACGCGCAG@LB@3'-UUU...ACUAC UUU AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -15.9939 kcal/mol@LB@Unfolding Energy - mRNA 2.93365 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 134 -- 149@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 5 -- 11@LB@ |