| 197 |
0.0346 |
0.5559 |
b2829 |
ptsP |
-9.94 |
0.108120 |
103 -- 113 |
80 -- 90 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
_____________102_________114\n_____________|___________|\n5'-CCA...AAUGA___________AGUGU...UGG-3'\n______________AAGAGUUCGCG\n______________||:|||||:||\n______________UUUUCAAGUGC\n3'-CGC...AGGCG___________AACCG...AAG-5'\n_____________|___________|\n_____________91__________79\n |
107 -- 113 |
80 -- 86 |
-13.2227 kcal/mol |
2.77203 kcal/mol |
0.506776 kcal/mol |
102 114@LB@ | |@LB@5'-CCA...AAUGA AGUGU...UGG-3'@LB@ AAGAGUUCGCG@LB@ ||:|||||:||@LB@ UUUUCAAGUGC@LB@3'-CGC...AGGCG AACCG...AAG-5'@LB@ | |@LB@ 91 79@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -13.2227 kcal/mol@LB@Unfolding Energy - mRNA 2.77203 kcal/mol@LB@Unfolding Energy - sRNA 0.506776 kcal/mol@LB@@LB@Position - mRNA 103 -- 113@LB@Position - sRNA 80 -- 90@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 119 |
0.02023 |
0.5385 |
b3579 |
yiaO |
-11.14 |
0.066893 |
104 -- 124 |
64 -- 84 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________103_____________________125\n_____________|_______________________|\n5'-ACU...UUCCC______CC_______________AUUAU...AAA-3'\n______________UUACGU__UGGUUUUA__UAUUC\n______________|:||||__|||:||||__|||||\n______________AGUGCA__ACCGAAAU__AUAAG\n3'-CGC...UUUCA________________CA_____CUCAA...AAG-5'\n_____________|_______________________|\n_____________85______________________63\n |
113 -- 119 |
71 -- 77 |
-15.3214 kcal/mol |
3.60448 kcal/mol |
0.573392 kcal/mol |
103 125@LB@ | |@LB@5'-ACU...UUCCC CC AUUAU...AAA-3'@LB@ UUACGU UGGUUUUA UAUUC@LB@ |:|||| |||:|||| |||||@LB@ AGUGCA ACCGAAAU AUAAG@LB@3'-CGC...UUUCA CA CUCAA...AAG-5'@LB@ | |@LB@ 85 63@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -15.3214 kcal/mol@LB@Unfolding Energy - mRNA 3.60448 kcal/mol@LB@Unfolding Energy - sRNA 0.573392 kcal/mol@LB@@LB@Position - mRNA 104 -- 124@LB@Position - sRNA 64 -- 84@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 49 |
0.01016 |
0.5385 |
b3354 |
yheU |
-13.31 |
0.027656 |
105 -- 118 |
71 -- 84 |
UPF0270 family protein |
|
_____________104____________119\n_____________|______________|\n5'-CUG...GGCGG______________UUGGC...GUA-3'\n______________UCAUGUUGGCUUUA\n______________|||:||||||||||\n______________AGUGCAACCGAAAU\n3'-CGC...UUUCA______________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
112 -- 118 |
71 -- 77 |
-20.4483 kcal/mol |
6.58199 kcal/mol |
0.5567 kcal/mol |
104 119@LB@ | |@LB@5'-CUG...GGCGG UUGGC...GUA-3'@LB@ UCAUGUUGGCUUUA@LB@ |||:||||||||||@LB@ AGUGCAACCGAAAU@LB@3'-CGC...UUUCA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -20.4483 kcal/mol@LB@Unfolding Energy - mRNA 6.58199 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 129 |
0.02219 |
0.5385 |
b4034 |
malE |
-15.67 |
0.010476 |
105 -- 137 |
9 -- 40 |
maltose transporter subunit |
|
_____________104_______________________________138\n_____________|_________________________________|\n5'-AGG...GGGGC____G___AAG____AUG_________U_____AUAAA...UGG-3'\n______________GUAG_GGC___GAGG___GAAAGAGGU_GCCGU\n______________|:||_|:|___:|||___:||||||||_||||:\n______________CGUC_CUG___UUCC___UUUUCUCCA_CGGCG\n3'-CGC...UUGCC____A___AAG____CAA_______________AGGCAAAG-5'\n_____________|_________________________________|\n_____________41________________________________8\n |
125 -- 131 |
14 -- 20 |
-33.6959 kcal/mol |
8.2816 kcal/mol |
9.74463 kcal/mol |
104 138@LB@ | |@LB@5'-AGG...GGGGC G AAG AUG U AUAAA...UGG-3'@LB@ GUAG GGC GAGG GAAAGAGGU GCCGU@LB@ |:|| |:| :||| :|||||||| ||||:@LB@ CGUC CUG UUCC UUUUCUCCA CGGCG@LB@3'-CGC...UUGCC A AAG CAA AGGCAAAG-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -33.6959 kcal/mol@LB@Unfolding Energy - mRNA 8.2816 kcal/mol@LB@Unfolding Energy - sRNA 9.74463 kcal/mol@LB@@LB@Position - mRNA 105 -- 137@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 26 |
0.00484 |
0.5385 |
b3033 |
yqiB |
-11.20 |
0.065436 |
106 -- 117 |
15 -- 27 |
DUF1249 protein YqiB |
|
_____________105___________118\n_____________|_____________|\n5'-UGG...CCAGU_____________GGAAA...GCG-3'\n______________GGG_UAGAAGAGG\n______________|||_||:||||||\n______________CCC_AUUUUCUCC\n3'-CGC...AAGUU___A_________ACGGC...AAG-5'\n_____________|_____________|\n_____________28____________14\n |
111 -- 117 |
15 -- 21 |
-17.3581 kcal/mol |
2.92425 kcal/mol |
3.23583 kcal/mol |
105 118@LB@ | |@LB@5'-UGG...CCAGU GGAAA...GCG-3'@LB@ GGG UAGAAGAGG@LB@ ||| ||:||||||@LB@ CCC AUUUUCUCC@LB@3'-CGC...AAGUU A ACGGC...AAG-5'@LB@ | |@LB@ 28 14@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -17.3581 kcal/mol@LB@Unfolding Energy - mRNA 2.92425 kcal/mol@LB@Unfolding Energy - sRNA 3.23583 kcal/mol@LB@@LB@Position - mRNA 106 -- 117@LB@Position - sRNA 15 -- 27@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 143 |
0.02402 |
0.5467 |
b4029 |
yjbH |
-10.20 |
0.097639 |
107 -- 117 |
75 -- 85 |
DUF940 family extracellular polysaccharide protein |
|
_____________106_________118\n_____________|___________|\n5'-GCG...CAUUA___________CUCGC...AUU-3'\n______________UUUAUGUUGGC\n______________||:|:||||||\n______________AAGUGCAACCG\n3'-CGC...UUUUC___________AAAUC...AAG-5'\n_____________|___________|\n_____________86__________74\n |
111 -- 117 |
75 -- 81 |
-14.6823 kcal/mol |
3.97178 kcal/mol |
0.509769 kcal/mol |
106 118@LB@ | |@LB@5'-GCG...CAUUA CUCGC...AUU-3'@LB@ UUUAUGUUGGC@LB@ ||:|:||||||@LB@ AAGUGCAACCG@LB@3'-CGC...UUUUC AAAUC...AAG-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -14.6823 kcal/mol@LB@Unfolding Energy - mRNA 3.97178 kcal/mol@LB@Unfolding Energy - sRNA 0.509769 kcal/mol@LB@@LB@Position - mRNA 107 -- 117@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 183 |
0.03203 |
0.5559 |
b4484 |
cpxP |
-9.38 |
0.135070 |
107 -- 120 |
71 -- 85 |
inhibitor of the cpx response; periplasmic adaptor protein |
|
_____________106_____________121\n_____________|_______________|\n5'-UAA...AUGAC_______________CACCC...GUG-3'\n______________UUUACGUUG_UUUUA\n______________||:||||||_:||||\n______________AAGUGCAAC_GAAAU\n3'-CGC...UUUUC_________C_____CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
109 -- 115 |
77 -- 83 |
-11.4265 kcal/mol |
1.48788 kcal/mol |
0.560731 kcal/mol |
106 121@LB@ | |@LB@5'-UAA...AUGAC CACCC...GUG-3'@LB@ UUUACGUUG UUUUA@LB@ ||:|||||| :||||@LB@ AAGUGCAAC GAAAU@LB@3'-CGC...UUUUC C CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -11.4265 kcal/mol@LB@Unfolding Energy - mRNA 1.48788 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 107 -- 120@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 15 |
0.002894 |
0.5385 |
b2780 |
pyrG |
-11.46 |
0.058961 |
111 -- 140 |
60 -- 90 |
CTP synthetase |
|
_____________110_______________________________141\n_____________|_________________________________|\n5'-UGU...AUAAU________________ACA___CA_________AUACU...GCC-3'\n______________GAAAGUUUG___UGGC___GGU__UGUUCGGGU\n______________:||||||::___||||___:||__|:||||:||\n______________UUUUCAAGU___ACCG___UCA__AUAAGCUCA\n3'-CGC...AGGCG_________GCA____AAA______________ACUCU...AAG-5'\n_____________|_________________________________|\n_____________91________________________________59\n |
134 -- 140 |
60 -- 66 |
-21.5125 kcal/mol |
8.34782 kcal/mol |
1.70935 kcal/mol |
110 141@LB@ | |@LB@5'-UGU...AUAAU ACA CA AUACU...GCC-3'@LB@ GAAAGUUUG UGGC GGU UGUUCGGGU@LB@ :||||||:: |||| :|| |:||||:||@LB@ UUUUCAAGU ACCG UCA AUAAGCUCA@LB@3'-CGC...AGGCG GCA AAA ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -21.5125 kcal/mol@LB@Unfolding Energy - mRNA 8.34782 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 111 -- 140@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 147 |
0.02477 |
0.5467 |
b3259 |
prmA |
-10.37 |
0.091190 |
111 -- 125 |
72 -- 88 |
methyltransferase for 50S ribosomal subunit protein L11 |
|
_____________110_______________126\n_____________|_________________|\n5'-GCC...CUACU_________________CCUGG...AGG-3'\n______________AAGUUUGC__UGGCUUU\n______________|||||::|__|||||||\n______________UUCAAGUG__ACCGAAA\n3'-CGC...GCGUU________CA_______UCAAU...AAG-5'\n_____________|_________________|\n_____________89________________71\n |
119 -- 125 |
72 -- 78 |
-14.8408 kcal/mol |
3.95141 kcal/mol |
0.517175 kcal/mol |
110 126@LB@ | |@LB@5'-GCC...CUACU CCUGG...AGG-3'@LB@ AAGUUUGC UGGCUUU@LB@ |||||::| |||||||@LB@ UUCAAGUG ACCGAAA@LB@3'-CGC...GCGUU CA UCAAU...AAG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -14.8408 kcal/mol@LB@Unfolding Energy - mRNA 3.95141 kcal/mol@LB@Unfolding Energy - sRNA 0.517175 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 166 |
0.02918 |
0.5559 |
b3518 |
yhjA |
-9.21 |
0.144312 |
113 -- 127 |
71 -- 85 |
putative cytochrome C peroxidase |
|
_____________112_____________128\n_____________|_______________|\n5'-CCG...UGUUU______A________UCUCG...GCA-3'\n______________UUUAUG_UGGCUUUG\n______________||:|:|_|||||||:\n______________AAGUGC_ACCGAAAU\n3'-CGC...UUUUC______A________CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
121 -- 127 |
71 -- 77 |
-14.7899 kcal/mol |
5.0213 kcal/mol |
0.560731 kcal/mol |
112 128@LB@ | |@LB@5'-CCG...UGUUU A UCUCG...GCA-3'@LB@ UUUAUG UGGCUUUG@LB@ ||:|:| |||||||:@LB@ AAGUGC ACCGAAAU@LB@3'-CGC...UUUUC A CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.21 kcal/mol@LB@Hybridization Energy -14.7899 kcal/mol@LB@Unfolding Energy - mRNA 5.0213 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 113 -- 127@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 71 -- 77@LB@ |
