59 |
0.003153 |
0.1645 |
b1220 |
ychO |
-8.71 |
0.038404 |
242 -- 262 |
37 -- 56 |
putative invasin |
|
_____________241___________________263\n_____________|_____________________|\n5'-UCA...UUACU________U______C_____AGCUA...CAA-3'\n______________CUUGCUUG_AGCAGG_GGUAC\n______________|||||||:_||||:|_:|:||\n______________GAACGAAU_UCGUUC_UCGUG\n3'-UUU...ACUUU_______________U_____AAUUU...CAA-5'\n_____________|_____________________|\n_____________57____________________36\n |
242 -- 248 |
50 -- 56 |
-24.8668 kcal/mol |
9.95535 kcal/mol |
6.20049 kcal/mol |
241 263@LB@ | |@LB@5'-UCA...UUACU U C AGCUA...CAA-3'@LB@ CUUGCUUG AGCAGG GGUAC@LB@ |||||||: ||||:| :|:||@LB@ GAACGAAU UCGUUC UCGUG@LB@3'-UUU...ACUUU U AAUUU...CAA-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -24.8668 kcal/mol@LB@Unfolding Energy - mRNA 9.95535 kcal/mol@LB@Unfolding Energy - sRNA 6.20049 kcal/mol@LB@@LB@Position - mRNA 242 -- 262@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 50 -- 56@LB@ |
134 |
0.01281 |
0.308 |
b3316 |
rpsS |
-8.71 |
0.038435 |
274 -- 288 |
39 -- 53 |
30S ribosomal subunit protein S19 |
|
_____________273______________289\n_____________|________________|\n5'-GCG...GGAAA__G____A________CCCUG...CUU-3'\n______________GC__GAG_CAAGAAGC\n______________||__:||_||||||||\n______________CG__UUC_GUUCUUCG\n3'-UUU...UUGAA__AA____________UGAAU...CAA-5'\n_____________|________________|\n_____________54_______________38\n |
282 -- 288 |
39 -- 45 |
-16.1876 kcal/mol |
1.46049 kcal/mol |
6.01745 kcal/mol |
273 289@LB@ | |@LB@5'-GCG...GGAAA G A CCCUG...CUU-3'@LB@ GC GAG CAAGAAGC@LB@ || :|| ||||||||@LB@ CG UUC GUUCUUCG@LB@3'-UUU...UUGAA AA UGAAU...CAA-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -16.1876 kcal/mol@LB@Unfolding Energy - mRNA 1.46049 kcal/mol@LB@Unfolding Energy - sRNA 6.01745 kcal/mol@LB@@LB@Position - mRNA 274 -- 288@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 39 -- 45@LB@ |
94 |
0.006975 |
0.2379 |
b1284 |
yciT |
-8.66 |
0.039674 |
34 -- 64 |
15 -- 42 |
global regulator of transcription; DeoR family |
|
_____________33_______________________________65\n_____________|________________________________|\n5'-GCA...AUCUC___A________GCA___C_____________UUGCU...CCA-3'\n______________GAG_UACUUAAA___GAA_UC_UUGCGCCAGG\n______________:||_:|||||||___:||_||_||:|:|||||\n______________UUC_GUGAAUUU___UUU_AG_AAUGUGGUCC\n3'-UUU...CGUUC__________________A__C__________UUUAG...CAA-5'\n_____________|________________________________|\n_____________43_______________________________14\n |
58 -- 64 |
15 -- 21 |
-23.4161 kcal/mol |
5.55126 kcal/mol |
9.20431 kcal/mol |
33 65@LB@ | |@LB@5'-GCA...AUCUC A GCA C UUGCU...CCA-3'@LB@ GAG UACUUAAA GAA UC UUGCGCCAGG@LB@ :|| :||||||| :|| || ||:|:|||||@LB@ UUC GUGAAUUU UUU AG AAUGUGGUCC@LB@3'-UUU...CGUUC A C UUUAG...CAA-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -23.4161 kcal/mol@LB@Unfolding Energy - mRNA 5.55126 kcal/mol@LB@Unfolding Energy - sRNA 9.20431 kcal/mol@LB@@LB@Position - mRNA 34 -- 64@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 15 -- 21@LB@ |
189 |
0.02233 |
0.3796 |
b3417 |
malP |
-8.63 |
0.040366 |
227 -- 245 |
35 -- 53 |
maltodextrin phosphorylase |
|
_____________226_________________246\n_____________|___________________|\n5'-ACA...GAUAA__AAUUU____________UCACG...GCC-3'\n______________GC_____CAGGAAGCGCUU\n______________||_____||:|||||:|||\n______________CG_____GUUCUUCGUGAA\n3'-UUU...UUGAA__AAUUC____________UUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________34\n |
239 -- 245 |
35 -- 41 |
-18.4249 kcal/mol |
3.68713 kcal/mol |
6.10399 kcal/mol |
226 246@LB@ | |@LB@5'-ACA...GAUAA AAUUU UCACG...GCC-3'@LB@ GC CAGGAAGCGCUU@LB@ || ||:|||||:|||@LB@ CG GUUCUUCGUGAA@LB@3'-UUU...UUGAA AAUUC UUUUU...CAA-5'@LB@ | |@LB@ 54 34@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -18.4249 kcal/mol@LB@Unfolding Energy - mRNA 3.68713 kcal/mol@LB@Unfolding Energy - sRNA 6.10399 kcal/mol@LB@@LB@Position - mRNA 227 -- 245@LB@Position - sRNA 35 -- 53@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 35 -- 41@LB@ |
74 |
0.004124 |
0.1795 |
b2599 |
pheA |
-8.54 |
0.042758 |
34 -- 48 |
29 -- 42 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________33______________49\n_____________|_______________|\n5'-UGA...UACUA___U___________ACAAA...UCG-3'\n______________AAG_CACUUAAGGAA\n______________|||_|||||||::||\n______________UUC_GUGAAUUUUUU\n3'-UUU...CGUUC_______________AAGCA...CAA-5'\n_____________|_______________|\n_____________43______________28\n |
42 -- 48 |
29 -- 35 |
-11.0993 kcal/mol |
0.931405 kcal/mol |
1.62369 kcal/mol |
33 49@LB@ | |@LB@5'-UGA...UACUA U ACAAA...UCG-3'@LB@ AAG CACUUAAGGAA@LB@ ||| |||||||::||@LB@ UUC GUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -11.0993 kcal/mol@LB@Unfolding Energy - mRNA 0.931405 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 34 -- 48@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 29 -- 35@LB@ |
187 |
0.02188 |
0.3768 |
b3065 |
rpsU |
-8.54 |
0.042773 |
188 -- 200 |
37 -- 49 |
30S ribosomal subunit protein S21 |
|
_____________187___________201\n_____________|_____________|\n5'-GAC...AUCAA_____________AUGCC...GUC-3'\n______________AGGUGAGAGGCAC\n______________|:|::|||:||||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
194 -- 200 |
37 -- 43 |
-18.635 kcal/mol |
4.05763 kcal/mol |
6.03369 kcal/mol |
187 201@LB@ | |@LB@5'-GAC...AUCAA AUGCC...GUC-3'@LB@ AGGUGAGAGGCAC@LB@ |:|::|||:||||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -18.635 kcal/mol@LB@Unfolding Energy - mRNA 4.05763 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 37 -- 43@LB@ |
95 |
0.007016 |
0.2379 |
b0464 |
acrR |
-8.52 |
0.043413 |
219 -- 228 |
37 -- 46 |
transcriptional repressor |
|
_____________218________229\n_____________|__________|\n5'-AAG...CCAAA__________AAGAA...CGC-3'\n______________CAAGAAGCGC\n______________||||||||:|\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
222 -- 228 |
37 -- 43 |
-15.2794 kcal/mol |
1.54243 kcal/mol |
5.21654 kcal/mol |
218 229@LB@ | |@LB@5'-AAG...CCAAA AAGAA...CGC-3'@LB@ CAAGAAGCGC@LB@ ||||||||:|@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -15.2794 kcal/mol@LB@Unfolding Energy - mRNA 1.54243 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 219 -- 228@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 37 -- 43@LB@ |
39 |
0.00159 |
0.1292 |
b1637 |
tyrS |
-8.51 |
0.043578 |
178 -- 203 |
5 -- 27 |
tyrosyl-tRNA synthetase |
|
_____________177________________________204\n_____________|__________________________|\n5'-CAU...UGCAG_________A__U_______U_____GCAAG...CGA-3'\n______________UCGUUAUAU_CA_GGAGAUU_UGAUG\n______________||||||:|:_||_|||:||:_|||||\n______________AGCAAUGUG_GU_CCUUUAG_ACUAC\n3'-UUU...UUUUA__________________________ACAA-5'\n_____________|__________________________|\n_____________28_________________________4\n |
191 -- 197 |
10 -- 16 |
-22.7194 kcal/mol |
5.60368 kcal/mol |
8.60118 kcal/mol |
177 204@LB@ | |@LB@5'-CAU...UGCAG A U U GCAAG...CGA-3'@LB@ UCGUUAUAU CA GGAGAUU UGAUG@LB@ ||||||:|: || |||:||: |||||@LB@ AGCAAUGUG GU CCUUUAG ACUAC@LB@3'-UUU...UUUUA ACAA-5'@LB@ | |@LB@ 28 4@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -22.7194 kcal/mol@LB@Unfolding Energy - mRNA 5.60368 kcal/mol@LB@Unfolding Energy - sRNA 8.60118 kcal/mol@LB@@LB@Position - mRNA 178 -- 203@LB@Position - sRNA 5 -- 27@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
159 |
0.01739 |
0.3504 |
b2426 |
ucpA |
-8.50 |
0.043854 |
215 -- 229 |
36 -- 49 |
furfural resistance protein putative short-chain oxidoreductase |
|
_____________214_____________230\n_____________|_______________|\n5'-GUG...CUCAC________C______GAUUA...UAA-3'\n______________GGGCAAGA_AGCACU\n______________::||||||_||||||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
216 -- 222 |
42 -- 48 |
-19.0239 kcal/mol |
4.4828 kcal/mol |
6.03645 kcal/mol |
214 230@LB@ | |@LB@5'-GUG...CUCAC C GAUUA...UAA-3'@LB@ GGGCAAGA AGCACU@LB@ ::|||||| ||||||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -19.0239 kcal/mol@LB@Unfolding Energy - mRNA 4.4828 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 215 -- 229@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 42 -- 48@LB@ |
114 |
0.009652 |
0.2693 |
b2614 |
grpE |
-8.47 |
0.044767 |
262 -- 275 |
27 -- 41 |
heat shock protein |
|
_____________261_____________276\n_____________|_______________|\n5'-GAG...GGAUC_____G_________GAGGC...CUG-3'\n______________AGCAC__AAGAGAUU\n______________|||||__||:|:|||\n______________UCGUG__UUUUUUAA\n3'-UUU...GUUCU_____AA________GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
269 -- 275 |
27 -- 33 |
-11.1078 kcal/mol |
0.992631 kcal/mol |
1.6427 kcal/mol |
261 276@LB@ | |@LB@5'-GAG...GGAUC G GAGGC...CUG-3'@LB@ AGCAC AAGAGAUU@LB@ ||||| ||:|:|||@LB@ UCGUG UUUUUUAA@LB@3'-UUU...GUUCU AA GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -11.1078 kcal/mol@LB@Unfolding Energy - mRNA 0.992631 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 262 -- 275@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |