124 |
0.004441 |
0.1258 |
b1656 |
sodB |
-12.34 |
0.027802 |
164 -- 220 |
1 -- 93 |
superoxide dismutase Fe |
|
_____________163____________________________________________________________________________________________221\n_____________|______________________________________________________________________________________________|\n5'-UCU...GGCUA_________________________AAUUAA___U________________________A________AU___AA___________________ACUAC...AGA-3'\n______________UUGUACG____________UAUGCA______UAA_AAAGGA______________GAGU_GCAAUGUC__UCG_____________UUACCUGC\n______________|:|||||____________||||||______:||_||||||______________|||:_||||:|:|__|||_____________|:||||||\n______________AGCAUGC____________AUACGU______GUU_UUUCCU______________CUCG_CGUUGCGG__AGC_____________AGUGGACG\n3'-UUU...GCCGC_______UUAGUUAACACG______CAUUAA___U______UCAUUCUGUUAUAC_____________GU___GAACUGCAACGUA________-5'\n_____________|_____________________________________________________________________________________________|\n_____________94____________________________________________________________________________________________1\n |
214 -- 220 |
1 -- 7 |
-45.1977 kcal/mol |
11.9384 kcal/mol |
20.925 kcal/mol |
163 221@LB@ | |@LB@5'-UCU...GGCUA AAUUAA U A AU AA ACUAC...AGA-3'@LB@ UUGUACG UAUGCA UAA AAAGGA GAGU GCAAUGUC UCG UUACCUGC@LB@ |:||||| |||||| :|| |||||| |||: ||||:|:| ||| |:||||||@LB@ AGCAUGC AUACGU GUU UUUCCU CUCG CGUUGCGG AGC AGUGGACG@LB@3'-UUU...GCCGC UUAGUUAACACG CAUUAA U UCAUUCUGUUAUAC GU GAACUGCAACGUA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -12.34 kcal/mol@LB@Hybridization Energy -45.1977 kcal/mol@LB@Unfolding Energy - mRNA 11.9384 kcal/mol@LB@Unfolding Energy - sRNA 20.925 kcal/mol@LB@@LB@Position - mRNA 164 -- 220@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 1 -- 7@LB@ |
133 |
0.004969 |
0.1313 |
b0148 |
hrpB |
-12.31 |
0.028366 |
190 -- 234 |
2 -- 40 |
putative ATP-dependent helicase |
|
_____________189___________________________________________235\n_____________|_____________________________________________|\n5'-GCA...CCCUC________UU___G________GCC______UGCCGUC_______AAUUA...AAU-3'\n______________UGGAGCGU__UGU_UCGUCGUU___CGUUGC_______UUACCUG\n______________|||||||:__:|:_:|:|||:|___||||||_______|:|||||\n______________ACCUCGCG__GCG_GGUAGCGA___GCAACG_______AGUGGAC\n3'-UUU...GUUAU________UU____________ACU______UA____________G-5'\n_____________|_____________________________________________|\n_____________41____________________________________________1\n |
228 -- 234 |
2 -- 8 |
-41.1674 kcal/mol |
13.5737 kcal/mol |
15.2914 kcal/mol |
189 235@LB@ | |@LB@5'-GCA...CCCUC UU G GCC UGCCGUC AAUUA...AAU-3'@LB@ UGGAGCGU UGU UCGUCGUU CGUUGC UUACCUG@LB@ |||||||: :|: :|:|||:| |||||| |:|||||@LB@ ACCUCGCG GCG GGUAGCGA GCAACG AGUGGAC@LB@3'-UUU...GUUAU UU ACU UA G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -41.1674 kcal/mol@LB@Unfolding Energy - mRNA 13.5737 kcal/mol@LB@Unfolding Energy - sRNA 15.2914 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 2 -- 8@LB@ |
79 |
0.001882 |
0.08273 |
b2219 |
atoS |
-12.26 |
0.029240 |
6 -- 44 |
51 -- 94 |
sensory histidine kinase in two-component regulatory system with AtoC |
|
_____________5_____________________________________________45\n_____________|_____________________________________________|\n______5'-UCAGG__________AA__A_____AA_______U__________C____CUCCG...AUA-3'\n______________GUUGUACGAA__GA____GC_____GGUA_UUCAAAGGGG_GAAG\n______________||:|||||||__:|____||_____:|||_||||||:::|_||||\n______________CAGCAUGCUU__UU____CG_____UCAU_AAGUUUUUUC_CUUC\n3'-UUU...AGCCG__________AG__AACA__AUACG____U_______________AUUCU...ACG-5'\n_____________|_____________________________________________|\n_____________95____________________________________________50\n |
9 -- 15 |
85 -- 91 |
-28.4119 kcal/mol |
11.2894 kcal/mol |
4.86774 kcal/mol |
5 45@LB@ | |@LB@ 5'-UCAGG AA A AA U C CUCCG...AUA-3'@LB@ GUUGUACGAA GA GC GGUA UUCAAAGGGG GAAG@LB@ ||:||||||| :| || :||| ||||||:::| ||||@LB@ CAGCAUGCUU UU CG UCAU AAGUUUUUUC CUUC@LB@3'-UUU...AGCCG AG AACA AUACG U AUUCU...ACG-5'@LB@ | |@LB@ 95 50@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -28.4119 kcal/mol@LB@Unfolding Energy - mRNA 11.2894 kcal/mol@LB@Unfolding Energy - sRNA 4.86774 kcal/mol@LB@@LB@Position - mRNA 6 -- 44@LB@Position - sRNA 51 -- 94@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 85 -- 91@LB@ |
14 |
2.236e-05 |
0.005627 |
b3306 |
rpsH |
-12.22 |
0.029933 |
187 -- 206 |
35 -- 55 |
30S ribosomal subunit protein S8 |
|
_____________186____________________207\n_____________|______________________|\n5'-AGC...AUCAC______A_______________AUGCA...AAG-3'\n______________GGGAGU_AAGACAG_AU_GAGC\n______________||:|||_||||||:_||_||||\n______________CCUUCA_UUCUGUU_UA_CUCG\n3'-UUU...UUUUU______________A__C____CGUUG...ACG-5'\n_____________|______________________|\n_____________56_____________________34\n |
194 -- 200 |
43 -- 49 |
-20.142 kcal/mol |
3.78995 kcal/mol |
4.0932 kcal/mol |
186 207@LB@ | |@LB@5'-AGC...AUCAC A AUGCA...AAG-3'@LB@ GGGAGU AAGACAG AU GAGC@LB@ ||:||| ||||||: || ||||@LB@ CCUUCA UUCUGUU UA CUCG@LB@3'-UUU...UUUUU A C CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -20.142 kcal/mol@LB@Unfolding Energy - mRNA 3.78995 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
24 |
0.0001125 |
0.01591 |
b3212 |
gltB |
-12.14 |
0.031409 |
27 -- 43 |
59 -- 75 |
glutamate synthase large subunit |
|
_____________26________________44\n_____________|_________________|\n5'-CUG...CAUAU_____________G___UCCCC...UAC-3'\n______________UUAUGCAGUAAUU_AGA\n______________:||||||||||||_|:|\n______________GAUACGUCAUUAA_UUU\n3'-UUU...AACAC_____________G___UUUCC...ACG-5'\n_____________|_________________|\n_____________76________________58\n |
33 -- 39 |
63 -- 69 |
-17.8824 kcal/mol |
2.24537 kcal/mol |
3.49177 kcal/mol |
26 44@LB@ | |@LB@5'-CUG...CAUAU G UCCCC...UAC-3'@LB@ UUAUGCAGUAAUU AGA@LB@ :|||||||||||| |:|@LB@ GAUACGUCAUUAA UUU@LB@3'-UUU...AACAC G UUUCC...ACG-5'@LB@ | |@LB@ 76 58@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -17.8824 kcal/mol@LB@Unfolding Energy - mRNA 2.24537 kcal/mol@LB@Unfolding Energy - sRNA 3.49177 kcal/mol@LB@@LB@Position - mRNA 27 -- 43@LB@Position - sRNA 59 -- 75@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 63 -- 69@LB@ |
105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
149 |
0.005854 |
0.1368 |
b2166 |
psuK |
-12.08 |
0.032688 |
265 -- 298 |
54 -- 89 |
pseudouridine kinase |
|
_____________264___________________________________299\n_____________|_____________________________________|\n5'-UUU...UUCAC________UUAAA__________________UCC___UA-3'\n______________AUGAAUCA______UUAUGCGG__AUUCAAA___AGG\n______________|:||||||______:|||||:|__|||||||___|||\n______________UGCUUAGU______GAUACGUC__UAAGUUU___UCC\n3'-UUU...CAGCA________UAACAC________AU_______UU____UUCAU...ACG-5'\n_____________|_____________________________________|\n_____________90____________________________________53\n |
279 -- 285 |
68 -- 74 |
-22.7366 kcal/mol |
5.9989 kcal/mol |
4.66068 kcal/mol |
264 299@LB@ | |@LB@5'-UUU...UUCAC UUAAA UCC UA-3'@LB@ AUGAAUCA UUAUGCGG AUUCAAA AGG@LB@ |:|||||| :|||||:| ||||||| |||@LB@ UGCUUAGU GAUACGUC UAAGUUU UCC@LB@3'-UUU...CAGCA UAACAC AU UU UUCAU...ACG-5'@LB@ | |@LB@ 90 53@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -22.7366 kcal/mol@LB@Unfolding Energy - mRNA 5.9989 kcal/mol@LB@Unfolding Energy - sRNA 4.66068 kcal/mol@LB@@LB@Position - mRNA 265 -- 298@LB@Position - sRNA 54 -- 89@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 68 -- 74@LB@ |
8 |
8.903e-06 |
0.003921 |
b1654 |
grxD |
-12.06 |
0.033180 |
187 -- 203 |
41 -- 57 |
glutaredoxin-4 |
|
_____________186_____________________204\n_____________|_______________________|\n5'-AAA...AGUUU_______C_______________ACCAC...CUG-3'\n______________GAGGAAG_AAGACAAU___GAGC\n______________:||||||_||||||||___||||\n______________UUCCUUC_UUCUGUUA___CUCG\n3'-UUU...GUUUU_______A________UAC____CGUUG...ACG-5'\n_____________|_______________________|\n_____________58______________________40\n |
196 -- 202 |
42 -- 48 |
-22.6133 kcal/mol |
5.89741 kcal/mol |
4.1846 kcal/mol |
186 204@LB@ | |@LB@5'-AAA...AGUUU C ACCAC...CUG-3'@LB@ GAGGAAG AAGACAAU GAGC@LB@ :|||||| |||||||| ||||@LB@ UUCCUUC UUCUGUUA CUCG@LB@3'-UUU...GUUUU A UAC CGUUG...ACG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -22.6133 kcal/mol@LB@Unfolding Energy - mRNA 5.89741 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 42 -- 48@LB@ |
138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
44 |
0.0004181 |
0.03347 |
b3429 |
glgA |
-12.00 |
0.034422 |
173 -- 196 |
35 -- 55 |
glycogen synthase |
|
_____________172______________________197\n_____________|________________________|\n5'-GUA...GCUAC_____U_______UAAACA_____GAUAA...ACG-3'\n______________GGAAG_UAGGGCA______GGAGC\n______________|||||_||:|:||______|||||\n______________CCUUC_AUUCUGU______CCUCG\n3'-UUU...UUUUU_____________UAUA_______CGUUG...ACG-5'\n_____________|________________________|\n_____________56_______________________34\n |
179 -- 185 |
44 -- 50 |
-21.7083 kcal/mol |
5.57994 kcal/mol |
4.0932 kcal/mol |
172 197@LB@ | |@LB@5'-GUA...GCUAC U UAAACA GAUAA...ACG-3'@LB@ GGAAG UAGGGCA GGAGC@LB@ ||||| ||:|:|| |||||@LB@ CCUUC AUUCUGU CCUCG@LB@3'-UUU...UUUUU UAUA CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -21.7083 kcal/mol@LB@Unfolding Energy - mRNA 5.57994 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 173 -- 196@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 44 -- 50@LB@ |