61 |
0.006025 |
0.3261 |
b4330 |
yjiH |
-10.68 |
0.204041 |
214 -- 227 |
80 -- 92 |
nucleoside recognition pore and gate family putative inner membrane transporter |
|
_____________213______228\n_____________|________|\n5'-ACU...ACAAG________GUAGC...CCG-3'\n______________GGGAUGCU\n______________||||:|||\n______________CCCUGCGA\n3'-UUU...CAACA________AUUGG...UAG-5'\n_____________|________|\n_____________93_______79\n |
215 -- 221 |
85 -- 91 |
-14.2816 kcal/mol |
2.08889 kcal/mol |
5.76908 kcal/mol |
213 228@LB@ | |@LB@5'-ACU...ACAAG GUAGC...CCG-3'@LB@ GGGAUGCU@LB@ ||||:|||@LB@ CCCUGCGA@LB@3'-UUU...CAACA AUUGG...UAG-5'@LB@ | |@LB@ 93 79@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -14.2816 kcal/mol@LB@Unfolding Energy - mRNA 2.08889 kcal/mol@LB@Unfolding Energy - sRNA 5.76908 kcal/mol@LB@@LB@Position - mRNA 214 -- 227@LB@Position - sRNA 80 -- 92@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 85 -- 91@LB@ |
62 |
0.006126 |
0.3261 |
b3824 |
rhtB |
-10.68 |
0.204362 |
7 -- 23 |
171 -- 187 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________6_________________24\n_____________|_________________|\n_____5'-ACGCUG_______AAA_______GCGGU...ACC-3'\n______________ACGCCAG___UCAGUCA\n______________||:|||:___|||||||\n______________UGUGGUU___AGUCAGU\n3'-UUU...UAAAA_______AUG_______GUGUA...UAG-5'\n_____________|_________________|\n_____________188_______________170\n |
17 -- 23 |
171 -- 177 |
-18.1223 kcal/mol |
1.9449 kcal/mol |
4.7016 kcal/mol |
6 24@LB@ | |@LB@ 5'-ACGCUG AAA GCGGU...ACC-3'@LB@ ACGCCAG UCAGUCA@LB@ ||:|||: |||||||@LB@ UGUGGUU AGUCAGU@LB@3'-UUU...UAAAA AUG GUGUA...UAG-5'@LB@ | |@LB@ 188 170@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -18.1223 kcal/mol@LB@Unfolding Energy - mRNA 1.9449 kcal/mol@LB@Unfolding Energy - sRNA 4.7016 kcal/mol@LB@@LB@Position - mRNA 7 -- 23@LB@Position - sRNA 171 -- 187@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 171 -- 177@LB@ |
63 |
0.006154 |
0.3261 |
b3750 |
rbsC |
-15.65 |
0.019915 |
89 -- 120 |
139 -- 174 |
D-ribose ABC transporter permease |
|
_____________88___________________________________121\n_____________|____________________________________|\n5'-GAU...UCAUC___________A_______UC_____GG________UACUC...UCU-3'\n______________GUCAUGCAUGA___GGGCA__UCAGC____GGAAUU\n______________||||::|||||___:||||__|||:|____:|||||\n______________CAGUGUGUACU___UCCGU__AGUUG____UCUUAA\n3'-UUU...UGAGU___________ACG_____UC_____AAAG______CGCCA...UAG-5'\n_____________|____________________________________|\n_____________175__________________________________138\n |
91 -- 97 |
166 -- 172 |
-33.4294 kcal/mol |
9.19626 kcal/mol |
8.8011 kcal/mol |
88 121@LB@ | |@LB@5'-GAU...UCAUC A UC GG UACUC...UCU-3'@LB@ GUCAUGCAUGA GGGCA UCAGC GGAAUU@LB@ ||||::||||| :|||| |||:| :|||||@LB@ CAGUGUGUACU UCCGU AGUUG UCUUAA@LB@3'-UUU...UGAGU ACG UC AAAG CGCCA...UAG-5'@LB@ | |@LB@ 175 138@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -33.4294 kcal/mol@LB@Unfolding Energy - mRNA 9.19626 kcal/mol@LB@Unfolding Energy - sRNA 8.8011 kcal/mol@LB@@LB@Position - mRNA 89 -- 120@LB@Position - sRNA 139 -- 174@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 166 -- 172@LB@ |
64 |
0.006252 |
0.3261 |
b3195 |
mlaF |
-10.58 |
0.212925 |
52 -- 62 |
81 -- 91 |
ABC transporter maintaining OM lipid asymmetry ATP-binding protein |
|
_____________51____________________________________63\n_____________|_____________________________________|\n5'-UUU...UUCAA___UAA___GA______________AAAA__A_____AGACG...GAG-3'\n______________GGU___AUU__GCGCC_AUGCUUAG____UC_ACGCA\n______________|||___|||__:|:||_||:||:||____||_||:||\n______________CCA___UAA__UGUGG_UAUGAGUC____AG_UGUGU\n3'-UUU...ACCGC___C_____AA_____U____________________ACUAC...UAG-5'\n_____________|_____________________________________|\n_____________92____________________________________80\n |
166 -- 172 |
174 -- 180 |
-23.2269 kcal/mol |
9.4943 kcal/mol |
5.22711 kcal/mol |
51 63@LB@ | |@LB@5'-UUU...UUCAA UAA GA AAAA A AGACG...GAG-3'@LB@ GGU AUU GCGCC AUGCUUAG UC ACGCA@LB@ ||| ||| :|:|| ||:||:|| || ||:||@LB@ CCA UAA UGUGG UAUGAGUC AG UGUGU@LB@3'-UUU...ACCGC C AA U ACUAC...UAG-5'@LB@ | |@LB@ 92 80@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -23.2269 kcal/mol@LB@Unfolding Energy - mRNA 9.4943 kcal/mol@LB@Unfolding Energy - sRNA 5.22711 kcal/mol@LB@@LB@Position - mRNA 52 -- 62@LB@Position - sRNA 81 -- 91@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 174 -- 180@LB@ |
65 |
0.006332 |
0.3261 |
b3857 |
mobA |
-11.59 |
0.134663 |
143 -- 181 |
126 -- 173 |
molybdopterin-guanine dinucleotide synthase |
|
_____________142________________________________________________________182\n_____________|__________________________________________________________|\n5'-UCC...AUAGU_______C_____U_U___GA___A__C______AG______________A_______AAUAA...AAC-3'\n______________GAUGCUC__UUAC_C_UGA__CAG_CA_GUUAGC____________GGUC_AUCCCAC\n______________:||:|||__|:||_|_|||__|||_||_||:|:|____________||||_|||||||\n______________UUAUGAG__AGUG_G_ACU__GUC_GU_CAGUUG____________CCAG_UAGGGUG\n3'-UUU...UGUGG_______UC____U_U___AC___C__U______AAAGUCUUAACG____________ACGUA...UAG-5'\n_____________|__________________________________________________________|\n_____________174________________________________________________________125\n |
175 -- 181 |
126 -- 132 |
-38.7055 kcal/mol |
10.57 kcal/mol |
15.6637 kcal/mol |
142 182@LB@ | |@LB@5'-UCC...AUAGU C U U GA A C AG A AAUAA...AAC-3'@LB@ GAUGCUC UUAC C UGA CAG CA GUUAGC GGUC AUCCCAC@LB@ :||:||| |:|| | ||| ||| || ||:|:| |||| |||||||@LB@ UUAUGAG AGUG G ACU GUC GU CAGUUG CCAG UAGGGUG@LB@3'-UUU...UGUGG UC U U AC C U AAAGUCUUAACG ACGUA...UAG-5'@LB@ | |@LB@ 174 125@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -38.7055 kcal/mol@LB@Unfolding Energy - mRNA 10.57 kcal/mol@LB@Unfolding Energy - sRNA 15.6637 kcal/mol@LB@@LB@Position - mRNA 143 -- 181@LB@Position - sRNA 126 -- 173@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 126 -- 132@LB@ |
66 |
0.006473 |
0.3261 |
b0712 |
ybgK |
-17.58 |
0.008094 |
217 -- 255 |
130 -- 164 |
putative allophanate hydrolase subunit 2 |
|
_____________216________________________________________________________256\n_____________|__________________________________________________________|\n5'-CGC...GGAGU_____GA__A____U_____________U__AUACC___GUG______G_________ACGGU...AUA-3'\n______________AUGCU__AG_UUAU_C___GUGCGGGCA_GU_____ACU___CAGGAU_GCGGUCGUC\n______________||:||__||_|:|:_|___:|||:||||_||_____|||___|||:||_||||||:||\n______________UAUGA__UC_AGUG_G___UACGUCCGU_CA_____UGA___GUCUUA_CGCCAGUAG\n3'-UUU...GUGGU_____G________U_UAC_________U__GU______AA_______A_________GGUGA...UAG-5'\n_____________|__________________________________________________________|\n_____________165________________________________________________________129\n |
249 -- 255 |
130 -- 136 |
-44.2735 kcal/mol |
15.0195 kcal/mol |
15.1988 kcal/mol |
216 256@LB@ | |@LB@5'-CGC...GGAGU GA A U U AUACC GUG G ACGGU...AUA-3'@LB@ AUGCU AG UUAU C GUGCGGGCA GU ACU CAGGAU GCGGUCGUC@LB@ ||:|| || |:|: | :|||:|||| || ||| |||:|| ||||||:||@LB@ UAUGA UC AGUG G UACGUCCGU CA UGA GUCUUA CGCCAGUAG@LB@3'-UUU...GUGGU G U UAC U GU AA A GGUGA...UAG-5'@LB@ | |@LB@ 165 129@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -44.2735 kcal/mol@LB@Unfolding Energy - mRNA 15.0195 kcal/mol@LB@Unfolding Energy - sRNA 15.1988 kcal/mol@LB@@LB@Position - mRNA 217 -- 255@LB@Position - sRNA 130 -- 164@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 130 -- 136@LB@ |
67 |
0.006568 |
0.3261 |
b1927 |
amyA |
-8.95 |
0.423898 |
77 -- 95 |
58 -- 76 |
cytoplasmic alpha-amylase |
|
_____________76_____________________96\n_____________|______________________|\n5'-UUA...GAAAC__G_______GU___C______AAAAU...AUA-3'\n______________UG_UCGGUCA__CAU_GGUGCA\n______________|:_||:||||__|||_|:||||\n______________AU_AGUCAGU__GUA_CUACGU\n3'-UUU...UGGUU__G_______GU__________CCGUU...UAG-5'\n_____________|______________________|\n_____________77_____________________57\n |
35 -- 41 |
171 -- 177 |
-21.7732 kcal/mol |
10.1812 kcal/mol |
4.80336 kcal/mol |
76 96@LB@ | |@LB@5'-UUA...GAAAC G GU C AAAAU...AUA-3'@LB@ UG UCGGUCA CAU GGUGCA@LB@ |: ||:|||| ||| |:||||@LB@ AU AGUCAGU GUA CUACGU@LB@3'-UUU...UGGUU G GU CCGUU...UAG-5'@LB@ | |@LB@ 77 57@LB@@LB@@LB@Energy -8.95 kcal/mol@LB@Hybridization Energy -21.7732 kcal/mol@LB@Unfolding Energy - mRNA 10.1812 kcal/mol@LB@Unfolding Energy - sRNA 4.80336 kcal/mol@LB@@LB@Position - mRNA 77 -- 95@LB@Position - sRNA 58 -- 76@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 171 -- 177@LB@ |
68 |
0.00659 |
0.3261 |
b4080 |
mdtP |
-14.15 |
0.040423 |
195 -- 221 |
144 -- 172 |
outer membrane factor of efflux pump |
|
_____________194_______________________________222\n_____________|_________________________________|\n5'-CUG...CAAGG__C_____A________AUC_____________CGUCU...CUC-3'\n______________AG_CACGC_AUGAU_CA_____GUCAACUUUCA\n______________||_|||:|_|||||_||_____|||||||||||\n______________UC_GUGUG_UACUA_GU_____CAGUUGAAAGU\n3'-UUU...AUGAG__A___________C__CCGUU___________CUUAA...UAG-5'\n_____________|_________________________________|\n_____________173_______________________________143\n |
215 -- 221 |
144 -- 150 |
-24.8993 kcal/mol |
3.71866 kcal/mol |
8.07675 kcal/mol |
194 222@LB@ | |@LB@5'-CUG...CAAGG C A AUC CGUCU...CUC-3'@LB@ AG CACGC AUGAU CA GUCAACUUUCA@LB@ || |||:| ||||| || |||||||||||@LB@ UC GUGUG UACUA GU CAGUUGAAAGU@LB@3'-UUU...AUGAG A C CCGUU CUUAA...UAG-5'@LB@ | |@LB@ 173 143@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -24.8993 kcal/mol@LB@Unfolding Energy - mRNA 3.71866 kcal/mol@LB@Unfolding Energy - sRNA 8.07675 kcal/mol@LB@@LB@Position - mRNA 195 -- 221@LB@Position - sRNA 144 -- 172@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 144 -- 150@LB@ |
69 |
0.006739 |
0.3286 |
b2265 |
menF |
-9.03 |
0.410924 |
65 -- 108 |
52 -- 101 |
isochorismate synthase 2 |
|
_____________64__________109\n_____________|___________|\n5'-ACU...CGGGU___________CUUUC...CUC-3'\n______________UAUCGAUAUUC\n______________:|:|:|||:||\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________102_________51\n |
285 -- 291 |
176 -- 182 |
-9.38108 kcal/mol |
0.14396 kcal/mol |
3.38772 kcal/mol |
64 109@LB@ | |@LB@5'-ACU...CGGGU CUUUC...CUC-3'@LB@ UAUCGAUAUUC@LB@ :|:|:|||:||@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 102 51@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -9.38108 kcal/mol@LB@Unfolding Energy - mRNA 0.14396 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 65 -- 108@LB@Position - sRNA 52 -- 101@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 176 -- 182@LB@ |
70 |
0.00686 |
0.3298 |
b0761 |
modE |
-10.05 |
0.269682 |
248 -- 271 |
57 -- 77 |
transcriptional repressor for the molybdenum transport operon modABC |
|
_____________247______272\n_____________|________|\n5'-ACC...GAAAA________CUUUU...CCA-3'\n______________GCACUCCC\n______________||||:|||\n______________CGUGGGGG\n3'-UUU...UACCC________AACGA...UAG-5'\n_____________|________|\n_____________78_______56\n |
126 -- 132 |
11 -- 17 |
-14.7879 kcal/mol |
0.633098 kcal/mol |
5.13224 kcal/mol |
247 272@LB@ | |@LB@5'-ACC...GAAAA CUUUU...CCA-3'@LB@ GCACUCCC@LB@ ||||:|||@LB@ CGUGGGGG@LB@3'-UUU...UACCC AACGA...UAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -14.7879 kcal/mol@LB@Unfolding Energy - mRNA 0.633098 kcal/mol@LB@Unfolding Energy - sRNA 5.13224 kcal/mol@LB@@LB@Position - mRNA 248 -- 271@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 11 -- 17@LB@ |