61 |
0.003042 |
0.1727 |
b0104 |
guaC |
-6.79 |
0.490983 |
117 -- 124 |
52 -- 59 |
GMP reductase |
|
_____________116______125\n_____________|________|\n5'-AUG...CAGUC________CAUUG...GUC-3'\n______________UUGCGCCG\n______________:|||||||\n______________GACGCGGC\n3'-UUU...GAACC________AUUUA...GUG-5'\n_____________|________|\n_____________60_______51\n |
118 -- 124 |
52 -- 58 |
-14.4979 kcal/mol |
2.89251 kcal/mol |
4.81798 kcal/mol |
116 125@LB@ | |@LB@5'-AUG...CAGUC CAUUG...GUC-3'@LB@ UUGCGCCG@LB@ :|||||||@LB@ GACGCGGC@LB@3'-UUU...GAACC AUUUA...GUG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -6.79 kcal/mol@LB@Hybridization Energy -14.4979 kcal/mol@LB@Unfolding Energy - mRNA 2.89251 kcal/mol@LB@Unfolding Energy - sRNA 4.81798 kcal/mol@LB@@LB@Position - mRNA 117 -- 124@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 52 -- 58@LB@ |
62 |
0.003053 |
0.1727 |
b3812 |
yigB |
-11.80 |
0.062766 |
182 -- 199 |
65 -- 83 |
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
|
_____________181_________________200\n_____________|___________________|\n5'-CUG...UCCAC__________G________AAUGC...GAG-3'\n______________GCGCCAA_AC_GGGGAAAU\n______________|||||||_||_:|||||||\n______________CGCGGUU_UG_UCCCUUUA\n3'-UUU...UAUGA_______G__G________GAACC...GUG-5'\n_____________|___________________|\n_____________84__________________64\n |
193 -- 199 |
65 -- 71 |
-28.1563 kcal/mol |
8.99645 kcal/mol |
7.35968 kcal/mol |
181 200@LB@ | |@LB@5'-CUG...UCCAC G AAUGC...GAG-3'@LB@ GCGCCAA AC GGGGAAAU@LB@ ||||||| || :|||||||@LB@ CGCGGUU UG UCCCUUUA@LB@3'-UUU...UAUGA G G GAACC...GUG-5'@LB@ | |@LB@ 84 64@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -28.1563 kcal/mol@LB@Unfolding Energy - mRNA 8.99645 kcal/mol@LB@Unfolding Energy - sRNA 7.35968 kcal/mol@LB@@LB@Position - mRNA 182 -- 199@LB@Position - sRNA 65 -- 83@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 65 -- 71@LB@ |
63 |
0.003148 |
0.1727 |
b0131 |
panD |
-12.33 |
0.049519 |
276 -- 291 |
70 -- 84 |
aspartate 1-decarboxylase |
|
_____________275______________292\n_____________|________________|\n5'-AUU...GUUCU_______UUG______AUUUU...UUG-3'\n______________UGCGCCA___ACCAGG\n______________|||||||___||||||\n______________ACGCGGU___UGGUCC\n3'-UUU...UUAUG_______UG_______CUUUA...GUG-5'\n_____________|________________|\n_____________85_______________69\n |
276 -- 282 |
78 -- 84 |
-24.0598 kcal/mol |
4.4848 kcal/mol |
7.24859 kcal/mol |
275 292@LB@ | |@LB@5'-AUU...GUUCU UUG AUUUU...UUG-3'@LB@ UGCGCCA ACCAGG@LB@ ||||||| ||||||@LB@ ACGCGGU UGGUCC@LB@3'-UUU...UUAUG UG CUUUA...GUG-5'@LB@ | |@LB@ 85 69@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -24.0598 kcal/mol@LB@Unfolding Energy - mRNA 4.4848 kcal/mol@LB@Unfolding Energy - sRNA 7.24859 kcal/mol@LB@@LB@Position - mRNA 276 -- 291@LB@Position - sRNA 70 -- 84@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 78 -- 84@LB@ |
64 |
0.003238 |
0.1727 |
b2578 |
eamB |
-8.70 |
0.240388 |
240 -- 262 |
70 -- 85 |
cysteine and O-acetylserine exporter |
|
_____________239_____________________263\n_____________|_______________________|\n5'-GUC...ACACC___AUUAC____AU_________ACCGA...CGC-3'\n______________CUG_____CGCU__GACGCCAGG\n______________|||_____|||:__:||:|||||\n______________GAC_____GCGG__UUGUGGUCC\n3'-UUU...CUUAU_______________________CUUUA...GUG-5'\n_____________|_______________________|\n_____________86______________________69\n |
256 -- 262 |
70 -- 76 |
-20.6717 kcal/mol |
4.69447 kcal/mol |
7.27689 kcal/mol |
239 263@LB@ | |@LB@5'-GUC...ACACC AUUAC AU ACCGA...CGC-3'@LB@ CUG CGCU GACGCCAGG@LB@ ||| |||: :||:|||||@LB@ GAC GCGG UUGUGGUCC@LB@3'-UUU...CUUAU CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -8.70 kcal/mol@LB@Hybridization Energy -20.6717 kcal/mol@LB@Unfolding Energy - mRNA 4.69447 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 240 -- 262@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 70 -- 76@LB@ |
65 |
0.003263 |
0.1727 |
b2584 |
pka |
-7.67 |
0.359085 |
49 -- 62 |
69 -- 82 |
protein lysine acetyltransferase |
|
_____________48_____________63\n_____________|______________|\n5'-AGG...AUGGC__G___________CGGCG...GUA-3'\n______________CG_CGAUACCGGGG\n______________||_|:|:|||:|||\n______________GC_GUUGUGGUCCC\n3'-UUU...AUGAC__G___________UUUAG...GUG-5'\n_____________|______________|\n_____________83_____________68\n |
56 -- 62 |
69 -- 75 |
-21.7159 kcal/mol |
7.18281 kcal/mol |
6.85849 kcal/mol |
48 63@LB@ | |@LB@5'-AGG...AUGGC G CGGCG...GUA-3'@LB@ CG CGAUACCGGGG@LB@ || |:|:|||:|||@LB@ GC GUUGUGGUCCC@LB@3'-UUU...AUGAC G UUUAG...GUG-5'@LB@ | |@LB@ 83 68@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -21.7159 kcal/mol@LB@Unfolding Energy - mRNA 7.18281 kcal/mol@LB@Unfolding Energy - sRNA 6.85849 kcal/mol@LB@@LB@Position - mRNA 49 -- 62@LB@Position - sRNA 69 -- 82@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 69 -- 75@LB@ |
66 |
0.003275 |
0.1727 |
b0394 |
mak |
-8.12 |
0.303293 |
18 -- 92 |
5 -- 77 |
manno(fructo)kinase |
|
_____________17_______________________________________________________________________________93\n_____________|________________________________________________________________________________|\n5'-GUU...CUUCU____G___C_______CGC____AA_A_G_____CC____AAUUUUUGA_______________GAUAA____CAC____UUGUC...GUG-3'\n______________GCAC_CAG_GAAAUCU___GGCU__G_C_GUAAA__AUUA_________AC_____CACAGCAU_____UUUC___GGCC\n______________:|||_|||_|||||||___||||__|_|_|||||__||||_________||_____|||||||:_____||||___||||\n______________UGUG_GUC_CUUUAGA___CCGA__C_G_CAUUU__UAAU_________UG_____GUGUCGUG_____AAAG___CCGG\n3'-UUU...GCGGU________C_______A______CG___G_____AA____ACUACUCAA__UUCCC________ACAA_____U______CGUG-5'\n_____________|________________________________________________________________________________|\n_____________78_______________________________________________________________________________4\n |
70 -- 76 |
18 -- 24 |
-46.4183 kcal/mol |
15.5654 kcal/mol |
22.7286 kcal/mol |
17 93@LB@ | |@LB@5'-GUU...CUUCU G C CGC AA A G CC AAUUUUUGA GAUAA CAC UUGUC...GUG-3'@LB@ GCAC CAG GAAAUCU GGCU G C GUAAA AUUA AC CACAGCAU UUUC GGCC@LB@ :||| ||| ||||||| |||| | | ||||| |||| || |||||||: |||| ||||@LB@ UGUG GUC CUUUAGA CCGA C G CAUUU UAAU UG GUGUCGUG AAAG CCGG@LB@3'-UUU...GCGGU C A CG G AA ACUACUCAA UUCCC ACAA U CGUG-5'@LB@ | |@LB@ 78 4@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -46.4183 kcal/mol@LB@Unfolding Energy - mRNA 15.5654 kcal/mol@LB@Unfolding Energy - sRNA 22.7286 kcal/mol@LB@@LB@Position - mRNA 18 -- 92@LB@Position - sRNA 5 -- 77@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 18 -- 24@LB@ |
67 |
0.003373 |
0.1727 |
b0723 |
sdhA |
-10.29 |
0.122560 |
175 -- 204 |
36 -- 70 |
succinate dehydrogenase flavoprotein subunit |
|
_____________174_________________________________205\n_____________|___________________________________|\n5'-GGU...UUUAU___U____________G______GUG_________AAUUG...GUG-3'\n______________GGA__UC___GUUGUG_UGUGGG____UGUGAUGA\n______________|||__||___|:||:|_:||:::____|:||||||\n______________CCU__AG___CGACGC_GCAUUU____AUACUACU\n3'-UUU...UGGUC___UU__AAC______G______AAUA________CAAUG...GUG-5'\n_____________|___________________________________|\n_____________71__________________________________35\n |
198 -- 204 |
36 -- 42 |
-24.7755 kcal/mol |
5.81881 kcal/mol |
8.66537 kcal/mol |
174 205@LB@ | |@LB@5'-GGU...UUUAU U G GUG AAUUG...GUG-3'@LB@ GGA UC GUUGUG UGUGGG UGUGAUGA@LB@ ||| || |:||:| :||::: |:||||||@LB@ CCU AG CGACGC GCAUUU AUACUACU@LB@3'-UUU...UGGUC UU AAC G AAUA CAAUG...GUG-5'@LB@ | |@LB@ 71 35@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -24.7755 kcal/mol@LB@Unfolding Energy - mRNA 5.81881 kcal/mol@LB@Unfolding Energy - sRNA 8.66537 kcal/mol@LB@@LB@Position - mRNA 175 -- 204@LB@Position - sRNA 36 -- 70@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 36 -- 42@LB@ |
68 |
0.00345 |
0.1727 |
b3168 |
infB |
-10.64 |
0.105292 |
126 -- 148 |
49 -- 77 |
translation initiation factor IF-2 |
|
_____________125___________________________149\n_____________|_____________________________|\n5'-AAG...CCGGA______________A______________UAUUU...CUG-3'\n______________GCACU_____GAUU_UGGCUGC_CCGUAA\n______________:|||:_____:||:_|||||||_||||||\n______________UGUGG_____UUAG_ACCGACG_GGCAUU\n3'-UUU...GCGGU_____UCCCU____A_______C______UAAUA...GUG-5'\n_____________|_____________________________|\n_____________78____________________________48\n |
136 -- 142 |
56 -- 62 |
-27.6009 kcal/mol |
7.61735 kcal/mol |
9.34562 kcal/mol |
125 149@LB@ | |@LB@5'-AAG...CCGGA A UAUUU...CUG-3'@LB@ GCACU GAUU UGGCUGC CCGUAA@LB@ :|||: :||: ||||||| ||||||@LB@ UGUGG UUAG ACCGACG GGCAUU@LB@3'-UUU...GCGGU UCCCU A C UAAUA...GUG-5'@LB@ | |@LB@ 78 48@LB@@LB@@LB@Energy -10.64 kcal/mol@LB@Hybridization Energy -27.6009 kcal/mol@LB@Unfolding Energy - mRNA 7.61735 kcal/mol@LB@Unfolding Energy - sRNA 9.34562 kcal/mol@LB@@LB@Position - mRNA 126 -- 148@LB@Position - sRNA 49 -- 77@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 56 -- 62@LB@ |
69 |
0.003463 |
0.1727 |
b2346 |
mlaA |
-10.50 |
0.111973 |
167 -- 195 |
66 -- 86 |
ABC transporter maintaining OM lipid asymmetry OM lipoprotein component |
|
_____________166___________________________196\n_____________|_____________________________|\n5'-GCG...GGCAA_____AUAA____UAAAAAAA________CAUUU...AAG-3'\n______________ACUGC____GCCA________CAGGGAGA\n______________|||||____||||________||||||:|\n______________UGACG____CGGU________GUCCCUUU\n3'-UUU...GCUUA_____________UGUG____________AGAAC...GUG-5'\n_____________|_____________________________|\n_____________87____________________________65\n |
189 -- 195 |
66 -- 72 |
-21.8219 kcal/mol |
3.94189 kcal/mol |
7.38216 kcal/mol |
166 196@LB@ | |@LB@5'-GCG...GGCAA AUAA UAAAAAAA CAUUU...AAG-3'@LB@ ACUGC GCCA CAGGGAGA@LB@ ||||| |||| ||||||:|@LB@ UGACG CGGU GUCCCUUU@LB@3'-UUU...GCUUA UGUG AGAAC...GUG-5'@LB@ | |@LB@ 87 65@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -21.8219 kcal/mol@LB@Unfolding Energy - mRNA 3.94189 kcal/mol@LB@Unfolding Energy - sRNA 7.38216 kcal/mol@LB@@LB@Position - mRNA 167 -- 195@LB@Position - sRNA 66 -- 86@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 66 -- 72@LB@ |
70 |
0.003478 |
0.1727 |
b1919 |
dcyD |
-7.16 |
0.432573 |
249 -- 279 |
53 -- 83 |
D-cysteine desulfhydrase PLP-dependent |
|
_____________248_______________________________280\n_____________|_________________________________|\n5'-CUG...UCGGC____________CUC___U________C_____UUUCU...GGG-3'\n______________GCGCCAACGCCG___GAA_AUCU__GC_GCGCU\n______________||||||||:||:___|||_||||__||_||||:\n______________CGCGGUUGUGGU___CUU_UAGA__CG_CGCGG\n3'-UUU...UAUGA____________CC_________AC__A_____CAUUU...GUG-5'\n_____________|_________________________________|\n_____________84________________________________52\n |
252 -- 258 |
74 -- 80 |
-36.5845 kcal/mol |
12.956 kcal/mol |
16.4685 kcal/mol |
248 280@LB@ | |@LB@5'-CUG...UCGGC CUC U C UUUCU...GGG-3'@LB@ GCGCCAACGCCG GAA AUCU GC GCGCU@LB@ ||||||||:||: ||| |||| || ||||:@LB@ CGCGGUUGUGGU CUU UAGA CG CGCGG@LB@3'-UUU...UAUGA CC AC A CAUUU...GUG-5'@LB@ | |@LB@ 84 52@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -36.5845 kcal/mol@LB@Unfolding Energy - mRNA 12.956 kcal/mol@LB@Unfolding Energy - sRNA 16.4685 kcal/mol@LB@@LB@Position - mRNA 249 -- 279@LB@Position - sRNA 53 -- 83@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 74 -- 80@LB@ |