| 59 |
0.0005101 |
0.0395 |
pa2173a |
N/A |
-13.53 |
0.026409 |
139 -- 150 |
107 -- 119 |
|
|
_____________138___________151\n_____________|_____________|\n5'-CAA...AACCU_____________AUGGG...CCC-3'\n______________GCCGUGAU_AGCC\n______________:|||||||_||||\n______________UGGCACUA_UCGG\n3'-UUU...GUUUU________A____ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
140 -- 146 |
112 -- 118 |
-18.4805 kcal/mol |
2.71645 kcal/mol |
2.23484 kcal/mol |
138 151@LB@ | |@LB@5'-CAA...AACCU AUGGG...CCC-3'@LB@ GCCGUGAU AGCC@LB@ :||||||| ||||@LB@ UGGCACUA UCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -18.4805 kcal/mol@LB@Unfolding Energy - mRNA 2.71645 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 62 |
0.0005356 |
0.0397 |
pa5012 |
waaF |
-13.04 |
0.035456 |
194 -- 235 |
70 -- 110 |
heptosyltransferase II |
|
_____________193___________________________________________236\n_____________|_____________________________________________|\n5'-ACG...UCCGG_______AU______AU______UCGUA_____CUC___G_____GGACA...UCG-3'\n______________AGCCUGA____GAGA___UCUGA_____GGUCC___CUG_GUGGG\n______________|||||||____||||___|||||_____:||||___|||_|||||\n______________UCGGACU____CUCU___AGACU_____UCAGG___GAC_CACCC\n3'-UUU...ACUAA_______ACUC____AUU_____UC________CU____G_____AGAGA...GUU-5'\n_____________|_____________________________________________|\n_____________111___________________________________________69\n |
194 -- 200 |
104 -- 110 |
-40.3278 kcal/mol |
14.3527 kcal/mol |
12.939 kcal/mol |
193 236@LB@ | |@LB@5'-ACG...UCCGG AU AU UCGUA CUC G GGACA...UCG-3'@LB@ AGCCUGA GAGA UCUGA GGUCC CUG GUGGG@LB@ ||||||| |||| ||||| :|||| ||| |||||@LB@ UCGGACU CUCU AGACU UCAGG GAC CACCC@LB@3'-UUU...ACUAA ACUC AUU UC CU G AGAGA...GUU-5'@LB@ | |@LB@ 111 69@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -40.3278 kcal/mol@LB@Unfolding Energy - mRNA 14.3527 kcal/mol@LB@Unfolding Energy - sRNA 12.939 kcal/mol@LB@@LB@Position - mRNA 194 -- 235@LB@Position - sRNA 70 -- 110@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 65 |
0.0006555 |
0.04603 |
pa0184 |
N/A |
-11.46 |
0.086208 |
64 -- 73 |
101 -- 110 |
ABC transporter ATP-binding protein |
pa2294 |
_____________63_________74\n_____________|__________|\n5'-AUC...UCGGC__________UCGGC...UCC-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
67 -- 73 |
101 -- 107 |
-16.8516 kcal/mol |
3.27707 kcal/mol |
2.11196 kcal/mol |
63 74@LB@ | |@LB@5'-AUC...UCGGC UCGGC...UCC-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -16.8516 kcal/mol@LB@Unfolding Energy - mRNA 3.27707 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 64 -- 73@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 72 |
0.0007723 |
0.0493 |
pa2659 |
N/A |
-15.67 |
0.006436 |
157 -- 217 |
75 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________156____________________________________________________________218\n_____________|______________________________________________________________|\n5'-UUG...UCUGC_______C__A____AACAC__U___UUCCCAC_____GAU__CCA______AA________CCUGU...UGC-3'\n______________AAACCGU_GA__AGC_____GA_UGA_______GGAGA___UC___UGAAGA__CUGACUGC\n______________|||||||_||__|||_____||_|||_______|||||___||___||||||__|:||||||\n______________UUUGGCA_CU__UCG_____CU_ACU_______CCUCU___AG___ACUUCU__GGCUGACG\n3'-UUU...CAGUU__________AA___GA_____________________AUU___________CA________CACCC...GUU-5'\n_____________|______________________________________________________________|\n_____________122____________________________________________________________74\n |
211 -- 217 |
75 -- 81 |
-37.728 kcal/mol |
9.87154 kcal/mol |
12.1884 kcal/mol |
156 218@LB@ | |@LB@5'-UUG...UCUGC C A AACAC U UUCCCAC GAU CCA AA CCUGU...UGC-3'@LB@ AAACCGU GA AGC GA UGA GGAGA UC UGAAGA CUGACUGC@LB@ ||||||| || ||| || ||| ||||| || |||||| |:||||||@LB@ UUUGGCA CU UCG CU ACU CCUCU AG ACUUCU GGCUGACG@LB@3'-UUU...CAGUU AA GA AUU CA CACCC...GUU-5'@LB@ | |@LB@ 122 74@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -37.728 kcal/mol@LB@Unfolding Energy - mRNA 9.87154 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 157 -- 217@LB@Position - sRNA 75 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 70 |
0.0007568 |
0.0493 |
pa3767 |
N/A |
-16.77 |
0.002880 |
160 -- 178 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________159_______________________179\n_____________|_________________________|\n5'-CAU...AUAUG_________________________CCAUC...GCG-3'\n______________GAGACCG______GCCUGAUGGGGA\n______________:|:||||______||||||||:|||\n______________UUUUGGC______CGGACUACUCCU\n3'-UUU...CCAGU_______ACUAAU____________CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
172 -- 178 |
98 -- 104 |
-28.0357 kcal/mol |
9.01481 kcal/mol |
2.25226 kcal/mol |
159 179@LB@ | |@LB@5'-CAU...AUAUG CCAUC...GCG-3'@LB@ GAGACCG GCCUGAUGGGGA@LB@ :|:|||| ||||||||:|||@LB@ UUUUGGC CGGACUACUCCU@LB@3'-UUU...CCAGU ACUAAU CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -28.0357 kcal/mol@LB@Unfolding Energy - mRNA 9.01481 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 160 -- 178@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 69 |
0.0007462 |
0.0493 |
pa0882 |
N/A |
-13.09 |
0.034380 |
240 -- 255 |
104 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________239______________256\n_____________|________________|\n5'-CAA...GCAUC________C_______AGCAC...AUC-3'\n______________ACCGUGGU_AGCCUGG\n______________||||||:|_||||||:\n______________UGGCACUA_UCGGACU\n3'-UUU...GUUUU________A_______ACUCC...GUU-5'\n_____________|________________|\n_____________120______________103\n |
249 -- 255 |
104 -- 110 |
-23.473 kcal/mol |
8.14152 kcal/mol |
2.24159 kcal/mol |
239 256@LB@ | |@LB@5'-CAA...GCAUC C AGCAC...AUC-3'@LB@ ACCGUGGU AGCCUGG@LB@ ||||||:| ||||||:@LB@ UGGCACUA UCGGACU@LB@3'-UUU...GUUUU A ACUCC...GUU-5'@LB@ | |@LB@ 120 103@LB@@LB@@LB@Energy -13.09 kcal/mol@LB@Hybridization Energy -23.473 kcal/mol@LB@Unfolding Energy - mRNA 8.14152 kcal/mol@LB@Unfolding Energy - sRNA 2.24159 kcal/mol@LB@@LB@Position - mRNA 240 -- 255@LB@Position - sRNA 104 -- 119@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 68 |
0.0007335 |
0.0493 |
pa0794 |
N/A |
-9.72 |
0.203453 |
182 -- 194 |
107 -- 118 |
aconitate hydratase |
|
_____________181_____________________195\n_____________|_______________________|\n5'-CAU...ACACC________GAGUCCG____A___ACAGC...AGC-3'\n______________CCGUGAUU_______AGCC_UGA\n______________||||||||_______||||_|||\n______________GGCACUAA_______UCGG_ACU\n3'-UUU...UUUUU_______________________ACUCC...GUU-5'\n_____________|_______________________|\n_____________119_____________________106\n |
183 -- 189 |
111 -- 117 |
-17.4679 kcal/mol |
6.47077 kcal/mol |
2.24144 kcal/mol |
181 195@LB@ | |@LB@5'-CAU...ACACC GAGUCCG A ACAGC...AGC-3'@LB@ CCGUGAUU AGCC UGA@LB@ |||||||| |||| |||@LB@ GGCACUAA UCGG ACU@LB@3'-UUU...UUUUU ACUCC...GUU-5'@LB@ | |@LB@ 119 106@LB@@LB@@LB@Energy -9.72 kcal/mol@LB@Hybridization Energy -17.4679 kcal/mol@LB@Unfolding Energy - mRNA 6.47077 kcal/mol@LB@Unfolding Energy - sRNA 2.24144 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 107 -- 118@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 111 -- 117@LB@ |
