| 71 |
0.003339 |
0.1596 |
stm0105 |
yabI |
-14.10 |
0.163814 |
151 -- 168 |
141 -- 162 |
similar to E. coli orf hypothetical protein (AAC73176.1); Blastp hit to AAC73176.1 (254 aa) 89% identity in aa 1 - 253 |
|
_____________150____________________169\n_____________|______________________|\n5'-UGA...ACGAA__G___________________AAUCC...GGU-3'\n______________GG_GGACGGGGUAA____GCAG\n______________|:_:|||:||||||____:|||\n______________CU_UCUGUCCCAUU____UGUC\n3'-UUU...GAUAC__G___________UACA____CUUCA...UCA-5'\n_____________|______________________|\n_____________163____________________140\n |
158 -- 164 |
149 -- 155 |
-23.8591 kcal/mol |
5.26969 kcal/mol |
3.68511 kcal/mol |
150 169@LB@ | |@LB@5'-UGA...ACGAA G AAUCC...GGU-3'@LB@ GG GGACGGGGUAA GCAG@LB@ |: :|||:|||||| :|||@LB@ CU UCUGUCCCAUU UGUC@LB@3'-UUU...GAUAC G UACA CUUCA...UCA-5'@LB@ | |@LB@ 163 140@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.8591 kcal/mol@LB@Unfolding Energy - mRNA 5.26969 kcal/mol@LB@Unfolding Energy - sRNA 3.68511 kcal/mol@LB@@LB@Position - mRNA 151 -- 168@LB@Position - sRNA 141 -- 162@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 81 |
0.003764 |
0.1596 |
stm0121 |
ftsL |
-18.45 |
0.031843 |
91 -- 225 |
48 -- 186 |
cell division protein FtsL |
|
_____________90__________________226\n_____________|___________________|\n5'-CGU...UGCCG__________A________GAAAA...UGC-3'\n______________GGUGAAAAAG_GGUAG_CU\n______________:|||||||||_|||||_||\n______________UCACUUUUUC_CCAUC_GA\n3'-UUU...GUCCU________________A__GCGAU...UCA-5'\n_____________|___________________|\n_____________187_________________47\n |
133 -- 139 |
129 -- 135 |
-20.6582 kcal/mol |
4.19087 kcal/mol |
6.37024 kcal/mol |
90 226@LB@ | |@LB@5'-CGU...UGCCG A GAAAA...UGC-3'@LB@ GGUGAAAAAG GGUAG CU@LB@ :||||||||| ||||| ||@LB@ UCACUUUUUC CCAUC GA@LB@3'-UUU...GUCCU A GCGAU...UCA-5'@LB@ | |@LB@ 187 47@LB@@LB@@LB@Energy -18.45 kcal/mol@LB@Hybridization Energy -20.6582 kcal/mol@LB@Unfolding Energy - mRNA 4.19087 kcal/mol@LB@Unfolding Energy - sRNA 6.37024 kcal/mol@LB@@LB@Position - mRNA 91 -- 225@LB@Position - sRNA 48 -- 186@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 129 -- 135@LB@ |
| 67 |
0.003193 |
0.1596 |
stm0122 |
ftsI |
-11.87 |
0.349270 |
199 -- 241 |
52 -- 90 |
peptidoglycan glycosyltransferase FtsI |
|
_____________198_______________________242\n_____________|_________________________|\n5'-GUU...CGCGA____UUG_____UG___________CUGAU...UGG-3'\n______________UGCA___GACAU__AAUGGCGCAAC\n______________||||___:|||:__||:::|:||||\n______________ACGU___UUGUG__UUGUUGUGUUG\n3'-UUU...GGUUA_________________________UAGUG...UCA-5'\n_____________|_________________________|\n_____________91________________________51\n |
62 -- 68 |
72 -- 78 |
-17.673 kcal/mol |
4.85802 kcal/mol |
3.80548 kcal/mol |
198 242@LB@ | |@LB@5'-GUU...CGCGA UUG UG CUGAU...UGG-3'@LB@ UGCA GACAU AAUGGCGCAAC@LB@ |||| :|||: ||:::|:||||@LB@ ACGU UUGUG UUGUUGUGUUG@LB@3'-UUU...GGUUA UAGUG...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -17.673 kcal/mol@LB@Unfolding Energy - mRNA 4.85802 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 199 -- 241@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 80 |
0.003756 |
0.1596 |
stm0132 |
ftsA |
-17.45 |
0.046754 |
189 -- 236 |
139 -- 186 |
cell division protein FtsA |
|
_____________188_______________________________________237\n_____________|_________________________________________|\n5'-AAU...GAACA___A______AG___C_________AAAACUG___G_____CUGGA...UCA-3'\n______________ACA_UGAUCA____G_GACGGACAG_______GUA_UAGGA\n______________|||_|:||||____|_|||:|||||_______|||_:||||\n______________UGU_AUUAGU____C_CUGUCUGUC_______CAU_GUCCU\n3'-UUU...CACGA___A______GAUA___________CCAUUUA_________UCACU...UCA-5'\n_____________|_________________________________________|\n_____________187_______________________________________138\n |
214 -- 220 |
154 -- 160 |
-27.6527 kcal/mol |
5.88434 kcal/mol |
5.72652 kcal/mol |
188 237@LB@ | |@LB@5'-AAU...GAACA A AG C AAAACUG G CUGGA...UCA-3'@LB@ ACA UGAUCA G GACGGACAG GUA UAGGA@LB@ ||| |:|||| | |||:||||| ||| :||||@LB@ UGU AUUAGU C CUGUCUGUC CAU GUCCU@LB@3'-UUU...CACGA A GAUA CCAUUUA UCACU...UCA-5'@LB@ | |@LB@ 187 138@LB@@LB@@LB@Energy -17.45 kcal/mol@LB@Hybridization Energy -27.6527 kcal/mol@LB@Unfolding Energy - mRNA 5.88434 kcal/mol@LB@Unfolding Energy - sRNA 5.72652 kcal/mol@LB@@LB@Position - mRNA 189 -- 236@LB@Position - sRNA 139 -- 186@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 154 -- 160@LB@ |
| 66 |
0.003179 |
0.1596 |
stm0264 |
dnaQ |
-14.69 |
0.132400 |
209 -- 271 |
35 -- 91 |
DNA polymerase III epsilon subunit |
|
_____________208__________________________________________272\n_____________|____________________________________________|\n5'-CGG...CGCAA______C__AAAU_______AU_______U___AUU________GAUUG...UCG-3'\n______________GUCUGA_AU____GACCGAU___GAGCAC_GCA___ACACGACA\n______________||||||_||____||||:||___:|:|||_:||___||||:|||\n______________CAGACU_UA____CUGGUUA___UUUGUG_UGU___UGUGUUGU\n3'-UUU...GGCAC_________GCGU_______ACG______U______________AGUGU...UCA-5'\n_____________|____________________________________________|\n_____________92___________________________________________34\n |
217 -- 223 |
71 -- 77 |
-33.8618 kcal/mol |
8.04508 kcal/mol |
13.5573 kcal/mol |
208 272@LB@ | |@LB@5'-CGG...CGCAA C AAAU AU U AUU GAUUG...UCG-3'@LB@ GUCUGA AU GACCGAU GAGCAC GCA ACACGACA@LB@ |||||| || ||||:|| :|:||| :|| ||||:|||@LB@ CAGACU UA CUGGUUA UUUGUG UGU UGUGUUGU@LB@3'-UUU...GGCAC GCGU ACG U AGUGU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -33.8618 kcal/mol@LB@Unfolding Energy - mRNA 8.04508 kcal/mol@LB@Unfolding Energy - sRNA 13.5573 kcal/mol@LB@@LB@Position - mRNA 209 -- 271@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 91 |
0.004202 |
0.1596 |
stm0387 |
yaiI |
-16.26 |
0.073758 |
5 -- 45 |
23 -- 58 |
similar to E. coli orf hypothetical protein (AAC73490.1); Blastp hit to AAC73490.1 (192 aa) 89% identity in aa 41 - 191 |
|
_____________4____________________________________________46\n_____________|____________________________________________|\n_______5'-GUCC_______AUAGCCUU______AUU________G___A_______CGAUU...CCA-3'\n______________GCCAAGA________GCCCAU____AC_CGCA__CC_AUAAAAC\n______________|||||:|________||||||____||_||||__||_|||||||\n______________CGGUUUU________CGGGUA____UG_GCGU__GG_UAUUUUG\n3'-UUU...GCAUU_____________________GUCU__U____AA__C_______AAAAG...UCA-5'\n_____________|____________________________________________|\n_____________59___________________________________________22\n |
5 -- 11 |
52 -- 58 |
-32.2087 kcal/mol |
3.21436 kcal/mol |
17.1718 kcal/mol |
4 46@LB@ | |@LB@ 5'-GUCC AUAGCCUU AUU G A CGAUU...CCA-3'@LB@ GCCAAGA GCCCAU AC CGCA CC AUAAAAC@LB@ |||||:| |||||| || |||| || |||||||@LB@ CGGUUUU CGGGUA UG GCGU GG UAUUUUG@LB@3'-UUU...GCAUU GUCU U AA C AAAAG...UCA-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -32.2087 kcal/mol@LB@Unfolding Energy - mRNA 3.21436 kcal/mol@LB@Unfolding Energy - sRNA 17.1718 kcal/mol@LB@@LB@Position - mRNA 5 -- 45@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 93 |
0.004254 |
0.1596 |
stm0408 |
secF |
-18.22 |
0.034847 |
7 -- 64 |
39 -- 91 |
protein-export membrane protein SecF |
|
_____________6______________________________________65\n_____________|______________________________________|\n5'-CUU...GCACA_G__U____UGUUG______UA________________AGUCU...UGC-3'\n______________G_AA_ACAC_____AACAAC__AAC__CACGGCCGUAA\n______________|_||_||||_____||||||__|||__|||::||||||\n______________C_UU_UGUG_____UUGUUG__UUG__GUGUUGGCAUU\n3'-UUU...GUUAA_G__________________UG___UA___________CGGUU...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________38\n |
238 -- 244 |
59 -- 65 |
-26.2573 kcal/mol |
3.95572 kcal/mol |
10.1648 kcal/mol |
6 65@LB@ | |@LB@5'-CUU...GCACA G U UGUUG UA AGUCU...UGC-3'@LB@ G AA ACAC AACAAC AAC CACGGCCGUAA@LB@ | || |||| |||||| ||| |||::||||||@LB@ C UU UGUG UUGUUG UUG GUGUUGGCAUU@LB@3'-UUU...GUUAA G UG UA CGGUU...UCA-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -26.2573 kcal/mol@LB@Unfolding Energy - mRNA 3.95572 kcal/mol@LB@Unfolding Energy - sRNA 10.1648 kcal/mol@LB@@LB@Position - mRNA 7 -- 64@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 78 |
0.003685 |
0.1596 |
stm0423 |
ispA |
-20.49 |
0.014403 |
269 -- 289 |
38 -- 58 |
(2E 6E)-farnesyl diphosphate synthase |
|
_____________268____________________290\n_____________|______________________|\n5'-UGA...AUCGC____CU_____UU_________UCCCG...UCG-3'\n______________GCCA___GCCC__UCAGAACAC\n______________||||___||||__|||||||||\n______________CGGU___CGGG__AGUCUUGUG\n3'-UUU...GCAUU____UUU____U__________CGUAA...UCA-5'\n_____________|______________________|\n_____________59_____________________37\n |
281 -- 287 |
40 -- 46 |
-28.5082 kcal/mol |
2.40221 kcal/mol |
13.7699 kcal/mol |
268 290@LB@ | |@LB@5'-UGA...AUCGC CU UU UCCCG...UCG-3'@LB@ GCCA GCCC UCAGAACAC@LB@ |||| |||| |||||||||@LB@ CGGU CGGG AGUCUUGUG@LB@3'-UUU...GCAUU UUU U CGUAA...UCA-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -20.49 kcal/mol@LB@Hybridization Energy -28.5082 kcal/mol@LB@Unfolding Energy - mRNA 2.40221 kcal/mol@LB@Unfolding Energy - sRNA 13.7699 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 92 |
0.004229 |
0.1596 |
stm0669 |
phoL |
-19.39 |
0.022083 |
221 -- 286 |
36 -- 89 |
putative phosphate starvation-inducible protein ATP-binding |
|
_____________220__________________________________________________________________287\n_____________|____________________________________________________________________|\n5'-AAA...CGAUA_________G__GAACAGUUUGAAUAUA____C______AAUUAC___UU____________CA____CCGUC...GCC-3'\n______________CAGACACAA_AG________________GACA_UCGCGA_______CC__GAGCCCG_CAGA__ACGC\n______________||:||||||_|:________________:|||_||:|:|_______||__:|||||:_||||__||||\n______________GUUUGUGUU_UU________________UUGU_AGUGUU_______GG__UUCGGGU_GUCU__UGCG\n3'-UUU...UUAAC_________G__GUG________________________GGCAUUC__UU_______A____UG____UAAGG...UCA-5'\n_____________|____________________________________________________________________|\n_____________90___________________________________________________________________35\n |
270 -- 276 |
47 -- 53 |
-43.5648 kcal/mol |
9.30805 kcal/mol |
22.4875 kcal/mol |
220 287@LB@ | |@LB@5'-AAA...CGAUA G GAACAGUUUGAAUAUA C AAUUAC UU CA CCGUC...GCC-3'@LB@ CAGACACAA AG GACA UCGCGA CC GAGCCCG CAGA ACGC@LB@ ||:|||||| |: :||| ||:|:| || :|||||: |||| ||||@LB@ GUUUGUGUU UU UUGU AGUGUU GG UUCGGGU GUCU UGCG@LB@3'-UUU...UUAAC G GUG GGCAUUC UU A UG UAAGG...UCA-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -43.5648 kcal/mol@LB@Unfolding Energy - mRNA 9.30805 kcal/mol@LB@Unfolding Energy - sRNA 22.4875 kcal/mol@LB@@LB@Position - mRNA 221 -- 286@LB@Position - sRNA 36 -- 89@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 82 |
0.003783 |
0.1596 |
stm0710 |
ybgH |
-19.90 |
0.018103 |
103 -- 151 |
33 -- 90 |
MFS transporter |
|
_____________102__________________152\n_____________|____________________|\n5'-GCG...UUUAA_G__________________GGCUU...UUC-3'\n______________G_AAACACGGCGAUACGGCA\n______________|_||||||::|:|:||::||\n______________C_UUUGUGUUGUUGUGUUGU\n3'-UUU...GUUAA_G__________________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
116 -- 122 |
71 -- 77 |
-24.8461 kcal/mol |
5.94354 kcal/mol |
3.80671 kcal/mol |
102 152@LB@ | |@LB@5'-GCG...UUUAA G GGCUU...UUC-3'@LB@ G AAACACGGCGAUACGGCA@LB@ | ||||||::|:|:||::||@LB@ C UUUGUGUUGUUGUGUUGU@LB@3'-UUU...GUUAA G AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -19.90 kcal/mol@LB@Hybridization Energy -24.8461 kcal/mol@LB@Unfolding Energy - mRNA 5.94354 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 103 -- 151@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 71 -- 77@LB@ |
