24 |
0.001922 |
0.2633 |
b3017 |
ftsP |
-19.79 |
0.002953 |
203 -- 291 |
63 -- 135 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________202__________________________________________________________________________________________292\n_____________|____________________________________________________________________________________________|\n5'-GAC...AAUAU_________GUCG__________A_________C__G______CACU_____CA______GUUCCCCUGAAG____________________AGCAA...CGC-3'\n______________GUCA_CUCA____GCGUCAGUUC_UUCAGGCAU_GG__GAUUG____UUGUG__GGCGCU____________GCCAGCGCAGCCGG_GCAAC\n______________||||_|:||____||:|||||:|_||||:||||_||__:||:|____|||||__|:||||____________:|||:||||:||:|_:||||\n______________CAGU_GGGU____CGUAGUCAGG_AAGUUCGUA_CC__UUAGC____AACAC__CUGCGA____________UGGUUGCGUUGGUC_UGUUG\n3'-UUU...AACGC____A____GA_________________________AA______________C_______AU________________________G_____AAGCG...UAG-5'\n_____________|____________________________________________________________________________________________|\n_____________136__________________________________________________________________________________________62\n |
278 -- 284 |
71 -- 77 |
-82.7619 kcal/mol |
32.3928 kcal/mol |
37.2191 kcal/mol |
202 292@LB@ | |@LB@5'-GAC...AAUAU GUCG A C G CACU CA GUUCCCCUGAAG AGCAA...CGC-3'@LB@ GUCA CUCA GCGUCAGUUC UUCAGGCAU GG GAUUG UUGUG GGCGCU GCCAGCGCAGCCGG GCAAC@LB@ |||| |:|| ||:|||||:| ||||:|||| || :||:| ||||| |:|||| :|||:||||:||:| :||||@LB@ CAGU GGGU CGUAGUCAGG AAGUUCGUA CC UUAGC AACAC CUGCGA UGGUUGCGUUGGUC UGUUG@LB@3'-UUU...AACGC A GA AA C AU G AAGCG...UAG-5'@LB@ | |@LB@ 136 62@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -82.7619 kcal/mol@LB@Unfolding Energy - mRNA 32.3928 kcal/mol@LB@Unfolding Energy - sRNA 37.2191 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 63 -- 135@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
45 |
0.003942 |
0.2948 |
b0686 |
ybfF |
-11.97 |
0.113030 |
234 -- 245 |
63 -- 74 |
acyl-CoA esterase |
|
_____________233__________246\n_____________|____________|\n5'-CUU...CACAA____________AAUUC...GCG-3'\n______________AACCAGCACAAU\n______________|||||||||||:\n______________UUGGUCGUGUUG\n3'-UUU...UUGCG____________AAGCG...UAG-5'\n_____________|____________|\n_____________75___________62\n |
239 -- 245 |
63 -- 69 |
-18.9732 kcal/mol |
1.15073 kcal/mol |
9.24135 kcal/mol |
233 246@LB@ | |@LB@5'-CUU...CACAA AAUUC...GCG-3'@LB@ AACCAGCACAAU@LB@ |||||||||||:@LB@ UUGGUCGUGUUG@LB@3'-UUU...UUGCG AAGCG...UAG-5'@LB@ | |@LB@ 75 62@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -18.9732 kcal/mol@LB@Unfolding Energy - mRNA 1.15073 kcal/mol@LB@Unfolding Energy - sRNA 9.24135 kcal/mol@LB@@LB@Position - mRNA 234 -- 245@LB@Position - sRNA 63 -- 74@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 63 -- 69@LB@ |
199 |
0.02363 |
0.3833 |
b4141 |
yjeH |
-8.04 |
0.585705 |
57 -- 67 |
64 -- 74 |
putative transporter |
|
_____________56_____________68\n_____________|______________|\n5'-CAG...AAAUC___G_______C__AAAUU...CUG-3'\n______________UAC_CAGUUGC_CA\n______________|||_||||::|_||\n______________AUG_GUCAGUG_GU\n3'-UUU...UGGUU___A_______U__ACUAC...UAG-5'\n_____________|______________|\n_____________75_____________63\n |
163 -- 169 |
170 -- 176 |
-11.2481 kcal/mol |
2.09942 kcal/mol |
0.433965 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAUC G C AAAUU...CUG-3'@LB@ UAC CAGUUGC CA@LB@ ||| ||||::| ||@LB@ AUG GUCAGUG GU@LB@3'-UUU...UGGUU A U ACUAC...UAG-5'@LB@ | |@LB@ 75 63@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -11.2481 kcal/mol@LB@Unfolding Energy - mRNA 2.09942 kcal/mol@LB@Unfolding Energy - sRNA 0.433965 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 64 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 170 -- 176@LB@ |
138 |
0.01487 |
0.3575 |
b3771 |
ilvD |
-15.83 |
0.018324 |
35 -- 66 |
67 -- 98 |
dihydroxyacid dehydratase |
|
_____________34______67\n_____________|_______|\n5'-GCG...AAAAA_______GCACG...GUA-3'\n______________UGGGACG\n______________|||||||\n______________ACCCUGC\n3'-UUU...GCAAC_______GAAUU...UAG-5'\n_____________|_______|\n_____________99______66\n |
147 -- 153 |
87 -- 93 |
-12.7493 kcal/mol |
2.26202 kcal/mol |
4.21173 kcal/mol |
34 67@LB@ | |@LB@5'-GCG...AAAAA GCACG...GUA-3'@LB@ UGGGACG@LB@ |||||||@LB@ ACCCUGC@LB@3'-UUU...GCAAC GAAUU...UAG-5'@LB@ | |@LB@ 99 66@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -12.7493 kcal/mol@LB@Unfolding Energy - mRNA 2.26202 kcal/mol@LB@Unfolding Energy - sRNA 4.21173 kcal/mol@LB@@LB@Position - mRNA 35 -- 66@LB@Position - sRNA 67 -- 98@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 87 -- 93@LB@ |
152 |
0.0171 |
0.3749 |
b3605 |
lldD |
-10.23 |
0.248595 |
212 -- 221 |
68 -- 77 |
L-lactate dehydrogenase FMN-linked |
|
_____________211_______222\n_____________|_________|\n5'-UUU...GAAAA_________UAUUU...ACA-3'\n______________ACGCAUGAU\n______________||:||||||\n______________UGUGUACUA\n3'-UUU...GUCAG_________CGUCC...UAG-5'\n_____________|_________|\n_____________78________67\n |
199 -- 205 |
163 -- 169 |
-11.1438 kcal/mol |
1.00002 kcal/mol |
4.14962 kcal/mol |
211 222@LB@ | |@LB@5'-UUU...GAAAA UAUUU...ACA-3'@LB@ ACGCAUGAU@LB@ ||:||||||@LB@ UGUGUACUA@LB@3'-UUU...GUCAG CGUCC...UAG-5'@LB@ | |@LB@ 78 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -11.1438 kcal/mol@LB@Unfolding Energy - mRNA 1.00002 kcal/mol@LB@Unfolding Energy - sRNA 4.14962 kcal/mol@LB@@LB@Position - mRNA 212 -- 221@LB@Position - sRNA 68 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
46 |
0.004081 |
0.2985 |
b2466 |
ypfG |
-10.37 |
0.233995 |
256 -- 280 |
68 -- 95 |
DUF1176 family protein |
|
_____________255_____281\n_____________|_______|\n5'-AAA...CAAAC_______UUAAU...UCA-3'\n______________GUCACAU\n______________||||||:\n______________CAGUGUG\n3'-UUU...UGAGU_______UACUA...UAG-5'\n_____________|_______|\n_____________96______67\n |
57 -- 63 |
168 -- 174 |
-9.42181 kcal/mol |
2.13246 kcal/mol |
0.260649 kcal/mol |
255 281@LB@ | |@LB@5'-AAA...CAAAC UUAAU...UCA-3'@LB@ GUCACAU@LB@ ||||||:@LB@ CAGUGUG@LB@3'-UUU...UGAGU UACUA...UAG-5'@LB@ | |@LB@ 96 67@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -9.42181 kcal/mol@LB@Unfolding Energy - mRNA 2.13246 kcal/mol@LB@Unfolding Energy - sRNA 0.260649 kcal/mol@LB@@LB@Position - mRNA 256 -- 280@LB@Position - sRNA 68 -- 95@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 168 -- 174@LB@ |
43 |
0.003721 |
0.2912 |
b3232 |
zapE |
-10.85 |
0.189153 |
236 -- 256 |
70 -- 90 |
divisome ATPase |
|
_____________235___________257\n_____________|_____________|\n5'-AGG...AACGG____UU_______AACCG...AAA-3'\n______________CCUU__UUUCGUC\n______________||||__:|||:||\n______________GGAA__GAAGUAG\n3'-UUU...GUGGG____C________-5'\n_____________|____________|\n_____________91___________70\n |
146 -- 152 |
1 -- 7 |
-9.27362 kcal/mol |
0.691484 kcal/mol |
1.04836 kcal/mol |
235 257@LB@ | |@LB@5'-AGG...AACGG UU AACCG...AAA-3'@LB@ CCUU UUUCGUC@LB@ |||| :|||:||@LB@ GGAA GAAGUAG@LB@3'-UUU...GUGGG C -5'@LB@ | |@LB@ 91 70@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -9.27362 kcal/mol@LB@Unfolding Energy - mRNA 0.691484 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 236 -- 256@LB@Position - sRNA 70 -- 90@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
147 |
0.01564 |
0.358 |
b3153 |
yhbO |
-15.63 |
0.020103 |
154 -- 186 |
72 -- 98 |
stress-resistance protein |
|
_____________153_______________________________187\n_____________|_________________________________|\n5'-GUU...AUCCC__A________AAUU___CUCAU__________AACGC...UUA-3'\n______________CG_UUGUGGGA____CGC_____CCAAUGCAAC\n______________||_||||||||____|||_____||||:|||||\n______________GC_AACACCCU____GCG_____GGUUGCGUUG\n3'-UUU...AAUUA__________________AAUU___________GUCGU...UAG-5'\n_____________|_________________________________|\n_____________99________________________________71\n |
180 -- 186 |
72 -- 78 |
-31.4938 kcal/mol |
8.17407 kcal/mol |
13.9341 kcal/mol |
153 187@LB@ | |@LB@5'-GUU...AUCCC A AAUU CUCAU AACGC...UUA-3'@LB@ CG UUGUGGGA CGC CCAAUGCAAC@LB@ || |||||||| ||| ||||:|||||@LB@ GC AACACCCU GCG GGUUGCGUUG@LB@3'-UUU...AAUUA AAUU GUCGU...UAG-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -15.63 kcal/mol@LB@Hybridization Energy -31.4938 kcal/mol@LB@Unfolding Energy - mRNA 8.17407 kcal/mol@LB@Unfolding Energy - sRNA 13.9341 kcal/mol@LB@@LB@Position - mRNA 154 -- 186@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 72 -- 78@LB@ |
101 |
0.01097 |
0.3575 |
b1882 |
cheY |
-8.64 |
0.475467 |
226 -- 255 |
72 -- 99 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________225_______________256\n_____________|_________________|\n5'-GCG...AGGCG_______GGA_______GCAAA...UUG-3'\n______________GGGGCAU___CCCUUGC\n______________||||||:___|||||||\n______________CCCCGUG___GGGAACG\n3'-UUU...GCGUA_______G_________AAGUAG-5'\n_____________|_________________|\n_____________100_______________71\n |
38 -- 44 |
7 -- 13 |
-25.3164 kcal/mol |
8.48869 kcal/mol |
10.1447 kcal/mol |
225 256@LB@ | |@LB@5'-GCG...AGGCG GGA GCAAA...UUG-3'@LB@ GGGGCAU CCCUUGC@LB@ ||||||: |||||||@LB@ CCCCGUG GGGAACG@LB@3'-UUU...GCGUA G AAGUAG-5'@LB@ | |@LB@ 100 71@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -25.3164 kcal/mol@LB@Unfolding Energy - mRNA 8.48869 kcal/mol@LB@Unfolding Energy - sRNA 10.1447 kcal/mol@LB@@LB@Position - mRNA 226 -- 255@LB@Position - sRNA 72 -- 99@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 7 -- 13@LB@ |
193 |
0.0225 |
0.3833 |
b3751 |
rbsB |
-14.76 |
0.030308 |
38 -- 56 |
74 -- 93 |
D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
|
_____________37________________________________________________57\n_____________|_________________________________________________|\n___5'-GCGGUACG_____GG______GAAAA_____CA___U____________________UUAAU...UCU-3'\n______________AGUCU__CGGGCG_____GGUCG__UUG_UGGGACGUU_GAUCGGCGCA\n______________||||:__|::||:_____::|||__|||_|||||||:|_:|:|::||||\n______________UCAGG__GUUCGU_____UUAGC__AAC_ACCCUGCGA_UUGGUUGCGU\n3'-UUU...CGUAG_____AA______ACCAA____________________A__________UGGUC...UAG-5'\n_____________|_________________________________________________|\n_____________94________________________________________________73\n |
40 -- 46 |
85 -- 91 |
-47.7546 kcal/mol |
17.619 kcal/mol |
19.1533 kcal/mol |
37 57@LB@ | |@LB@ 5'-GCGGUACG GG GAAAA CA U UUAAU...UCU-3'@LB@ AGUCU CGGGCG GGUCG UUG UGGGACGUU GAUCGGCGCA@LB@ ||||: |::||: ::||| ||| |||||||:| :|:|::||||@LB@ UCAGG GUUCGU UUAGC AAC ACCCUGCGA UUGGUUGCGU@LB@3'-UUU...CGUAG AA ACCAA A UGGUC...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -47.7546 kcal/mol@LB@Unfolding Energy - mRNA 17.619 kcal/mol@LB@Unfolding Energy - sRNA 19.1533 kcal/mol@LB@@LB@Position - mRNA 38 -- 56@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 85 -- 91@LB@ |