16 |
0.0004819 |
0.102 |
b0957 |
ompA |
-13.00 |
0.036257 |
182 -- 195 |
8 -- 22 |
outer membrane protein A (3a;II*;G;d) |
|
_____________181_____________196\n_____________|_______________|\n5'-CUU...UUGGA_______________AAAAA...AAC-3'\n______________UGAUAACGAG_GCGC\n______________|||||||:|:_||||\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
185 -- 191 |
13 -- 19 |
-17.7455 kcal/mol |
3.5039 kcal/mol |
1.23838 kcal/mol |
181 196@LB@ | |@LB@5'-CUU...UUGGA AAAAA...AAC-3'@LB@ UGAUAACGAG GCGC@LB@ |||||||:|: ||||@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -17.7455 kcal/mol@LB@Unfolding Energy - mRNA 3.5039 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 13 -- 19@LB@ |
90 |
0.009145 |
0.3104 |
b1079 |
flgH |
-6.81 |
0.379144 |
179 -- 204 |
10 -- 38 |
flagellar protein of basal-body outer-membrane L ring |
|
_____________178___________________________205\n_____________|_____________________________|\n5'-ACU...GUUUA____U___U____A_________C_____AAAAA...GGG-3'\n______________CUGA_UUU___GA_GAUGAUAGC__AUGC\n______________||||_||:___||_|||||||:|__||||\n______________GACU_AAG___CU_CUACUAUUG__UACG\n3'-UUU...GUAGA____U___UCC__A_________UU____CGCAG...AAG-5'\n_____________|_____________________________|\n_____________39____________________________9\n |
193 -- 199 |
16 -- 22 |
-21.1251 kcal/mol |
4.97135 kcal/mol |
9.34299 kcal/mol |
178 205@LB@ | |@LB@5'-ACU...GUUUA U U A C AAAAA...GGG-3'@LB@ CUGA UUU GA GAUGAUAGC AUGC@LB@ |||| ||: || |||||||:| ||||@LB@ GACU AAG CU CUACUAUUG UACG@LB@3'-UUU...GUAGA U UCC A UU CGCAG...AAG-5'@LB@ | |@LB@ 39 9@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -21.1251 kcal/mol@LB@Unfolding Energy - mRNA 4.97135 kcal/mol@LB@Unfolding Energy - sRNA 9.34299 kcal/mol@LB@@LB@Position - mRNA 179 -- 204@LB@Position - sRNA 10 -- 38@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 16 -- 22@LB@ |
31 |
0.001974 |
0.2094 |
b1080 |
flgI |
-10.59 |
0.096403 |
87 -- 101 |
7 -- 21 |
putative flagellar basal body protein |
|
_____________86______________102\n_____________|_______________|\n5'-AUU...ACUCA_______________CAUUG...AAA-3'\n______________GGUGGCGGAUGCGCG\n______________|:|::|::|||||||\n______________CUAUUGUUUACGCGC\n3'-UUU...UACUA_______________AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
95 -- 101 |
7 -- 13 |
-22.6939 kcal/mol |
10.8668 kcal/mol |
1.24179 kcal/mol |
86 102@LB@ | |@LB@5'-AUU...ACUCA CAUUG...AAA-3'@LB@ GGUGGCGGAUGCGCG@LB@ |:|::|::|||||||@LB@ CUAUUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -22.6939 kcal/mol@LB@Unfolding Energy - mRNA 10.8668 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 87 -- 101@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 7 -- 13@LB@ |
103 |
0.01026 |
0.3104 |
b1083 |
flgL |
-8.46 |
0.215699 |
195 -- 209 |
5 -- 21 |
flagellar hook-filament junction protein |
|
_____________194_______________210\n_____________|_________________|\n5'-UUG...GGGGA______________U__AGUAC...GUA-3'\n______________GAUAA__GAUGCGU_UC\n______________|||||__:|||||:_||\n______________CUAUU__UUACGCG_AG\n3'-UUU...UACUA_____GU_______C__AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
200 -- 206 |
8 -- 14 |
-13.0743 kcal/mol |
3.36074 kcal/mol |
1.24955 kcal/mol |
194 210@LB@ | |@LB@5'-UUG...GGGGA U AGUAC...GUA-3'@LB@ GAUAA GAUGCGU UC@LB@ ||||| :|||||: ||@LB@ CUAUU UUACGCG AG@LB@3'-UUU...UACUA GU C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -13.0743 kcal/mol@LB@Unfolding Energy - mRNA 3.36074 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 195 -- 209@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
7 |
9.926e-05 |
0.04801 |
b1113 |
ldtC |
-15.69 |
0.011765 |
184 -- 223 |
1 -- 45 |
L D-transpeptidase linking Lpp to murein |
|
_____________183___________________________________________224\n_____________|_____________________________________________|\n5'-CGU...UUAUA______A________UU________________A___________UCGCU...UGC-3'\n______________UUUAUU__UGGAUUU___GGUGAUGAU__CAAA__CGCGUUUUUC\n______________||:||:__||:|||:___|:|||||||__||||__|||||:||||\n______________AAGUAG__ACUUAAG___CUACUACUA__GUUU__GCGCAGAAAG\n3'-UUU...UUUUA______AG_______UCC_________UU____AC__________-5'\n_____________|____________________________________________|\n_____________46___________________________________________1\n |
217 -- 223 |
1 -- 7 |
-33.7876 kcal/mol |
8.63912 kcal/mol |
9.46113 kcal/mol |
183 224@LB@ | |@LB@5'-CGU...UUAUA A UU A UCGCU...UGC-3'@LB@ UUUAUU UGGAUUU GGUGAUGAU CAAA CGCGUUUUUC@LB@ ||:||: ||:|||: |:||||||| |||| |||||:||||@LB@ AAGUAG ACUUAAG CUACUACUA GUUU GCGCAGAAAG@LB@3'-UUU...UUUUA AG UCC UU AC -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -33.7876 kcal/mol@LB@Unfolding Energy - mRNA 8.63912 kcal/mol@LB@Unfolding Energy - sRNA 9.46113 kcal/mol@LB@@LB@Position - mRNA 184 -- 223@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
78 |
0.007118 |
0.3087 |
b1118 |
lolE |
-12.65 |
0.041861 |
19 -- 36 |
6 -- 21 |
lipoprotein-releasing system transmembrane protein |
|
_____________18_________________37\n_____________|__________________|\n5'-CUG...CUACC______CUC_________AACGC...GCA-3'\n______________GGUAAC___GAUGCGCGU\n______________|:||||___:||||||||\n______________CUAUUG___UUACGCGCA\n3'-UUU...UACUA______U___________GAAAG-5'\n_____________|__________________|\n_____________22_________________5\n |
30 -- 36 |
6 -- 12 |
-20.2716 kcal/mol |
6.37224 kcal/mol |
1.24519 kcal/mol |
18 37@LB@ | |@LB@5'-CUG...CUACC CUC AACGC...GCA-3'@LB@ GGUAAC GAUGCGCGU@LB@ |:|||| :||||||||@LB@ CUAUUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.2716 kcal/mol@LB@Unfolding Energy - mRNA 6.37224 kcal/mol@LB@Unfolding Energy - sRNA 1.24519 kcal/mol@LB@@LB@Position - mRNA 19 -- 36@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 6 -- 12@LB@ |
52 |
0.004683 |
0.3024 |
b1130 |
phoP |
-12.79 |
0.039529 |
186 -- 208 |
6 -- 31 |
response regulator in two-component regulatory system with PhoQ |
|
_____________185________________________209\n_____________|__________________________|\n5'-GAG...UAAGA_________A________________ACUGG...CCA-3'\n______________CAGGGA_GA__AUAA_AAAUGCGCGU\n______________||||||_||__||||_||||||||||\n______________GUCCCU_CU__UAUU_UUUACGCGCA\n3'-UUU...CUUAA______A__AC____G__________GAAAG-5'\n_____________|__________________________|\n_____________32_________________________5\n |
202 -- 208 |
6 -- 12 |
-26.853 kcal/mol |
6.30535 kcal/mol |
7.75407 kcal/mol |
185 209@LB@ | |@LB@5'-GAG...UAAGA A ACUGG...CCA-3'@LB@ CAGGGA GA AUAA AAAUGCGCGU@LB@ |||||| || |||| ||||||||||@LB@ GUCCCU CU UAUU UUUACGCGCA@LB@3'-UUU...CUUAA A AC G GAAAG-5'@LB@ | |@LB@ 32 5@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -26.853 kcal/mol@LB@Unfolding Energy - mRNA 6.30535 kcal/mol@LB@Unfolding Energy - sRNA 7.75407 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 6 -- 31@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
144 |
0.01383 |
0.3104 |
b1135 |
rluE |
-11.03 |
0.080673 |
174 -- 189 |
5 -- 20 |
23S rRNA pseudouridine(2457) synthase |
|
_____________173______________190\n_____________|________________|\n5'-UGU...CCGUC____A___________AUUAG...AAC-3'\n______________AUGA_AGAUGCGCGUU\n______________||:|_|:||||||||:\n______________UAUU_UUUACGCGCAG\n3'-UUU...ACUAC____G___________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
183 -- 189 |
5 -- 11 |
-17.9797 kcal/mol |
5.69694 kcal/mol |
1.24804 kcal/mol |
173 190@LB@ | |@LB@5'-UGU...CCGUC A AUUAG...AAC-3'@LB@ AUGA AGAUGCGCGUU@LB@ ||:| |:||||||||:@LB@ UAUU UUUACGCGCAG@LB@3'-UUU...ACUAC G AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -17.9797 kcal/mol@LB@Unfolding Energy - mRNA 5.69694 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 174 -- 189@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 5 -- 11@LB@ |
98 |
0.009835 |
0.3104 |
b1213 |
ychQ |
-13.77 |
0.026325 |
164 -- 179 |
6 -- 23 |
SIRB family inner membrane protein |
|
_____________163________________180\n_____________|__________________|\n5'-GAC...CUAUG__________________AACGC...AUC-3'\n______________GUGAUAACGA__GCGCGU\n______________:|||||||:|__||||||\n______________UACUAUUGUU__CGCGCA\n3'-UUU...CCUAC__________UA______GAAAG-5'\n_____________|__________________|\n_____________24_________________5\n |
167 -- 173 |
14 -- 20 |
-20.3809 kcal/mol |
4.08318 kcal/mol |
2.52311 kcal/mol |
163 180@LB@ | |@LB@5'-GAC...CUAUG AACGC...AUC-3'@LB@ GUGAUAACGA GCGCGU@LB@ :|||||||:| ||||||@LB@ UACUAUUGUU CGCGCA@LB@3'-UUU...CCUAC UA GAAAG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.3809 kcal/mol@LB@Unfolding Energy - mRNA 4.08318 kcal/mol@LB@Unfolding Energy - sRNA 2.52311 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 14 -- 20@LB@ |
116 |
0.01184 |
0.3104 |
b1218 |
chaC |
-12.45 |
0.045440 |
10 -- 29 |
8 -- 30 |
cation transport regulator |
|
_____________9_______________________30\n_____________|_______________________|\n5'-AUA...GCCAA_______________________AUAAA...CGC-3'\n______________AGGG__GAUGAUGAUAAAUG_GC\n______________||||__||||||:|:|||||_||\n______________UCCC__CUACUAUUGUUUAC_CG\n3'-UUU...UUAAG____UA______________G__CAGAAAG-5'\n_____________|_______________________|\n_____________31______________________7\n |
21 -- 27 |
11 -- 17 |
-25.0616 kcal/mol |
5.19055 kcal/mol |
7.41684 kcal/mol |
9 30@LB@ | |@LB@5'-AUA...GCCAA AUAAA...CGC-3'@LB@ AGGG GAUGAUGAUAAAUG GC@LB@ |||| ||||||:|:||||| ||@LB@ UCCC CUACUAUUGUUUAC CG@LB@3'-UUU...UUAAG UA G CAGAAAG-5'@LB@ | |@LB@ 31 7@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -25.0616 kcal/mol@LB@Unfolding Energy - mRNA 5.19055 kcal/mol@LB@Unfolding Energy - sRNA 7.41684 kcal/mol@LB@@LB@Position - mRNA 10 -- 29@LB@Position - sRNA 8 -- 30@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 11 -- 17@LB@ |