1 |
0 |
0 |
stm2982 |
gcvA |
-98.53 |
0.000000 |
1 -- 73 |
1 -- 73 |
transcriptional regulator GcvA |
|
______________1________________________________________________________________________74\n______________|________________________________________________________________________|\n___________5'-_________________________________________________________________________GCCGC...CGC-3'\n______________ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA\n3'-UUU...UGUGU_________________________________________________________________________-5'\n_____________|________________________________________________________________________|\n_____________74_______________________________________________________________________1\n |
67 -- 73 |
1 -- 7 |
-142.883 kcal/mol |
17.2949 kcal/mol |
26.5914 kcal/mol |
1 74@LB@ | |@LB@ 5'- GCCGC...CGC-3'@LB@ ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA@LB@3'-UUU...UGUGU -5'@LB@ | |@LB@ 74 1@LB@@LB@@LB@Energy -98.53 kcal/mol@LB@Hybridization Energy -142.883 kcal/mol@LB@Unfolding Energy - mRNA 17.2949 kcal/mol@LB@Unfolding Energy - sRNA 26.5914 kcal/mol@LB@@LB@Position - mRNA 1 -- 73@LB@Position - sRNA 1 -- 73@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 1 -- 7@LB@ |
62 |
0.003015 |
0.1596 |
stm1299 |
gdhA |
-15.31 |
0.105026 |
136 -- 171 |
63 -- 91 |
glutamate dehydrogenase |
|
_____________135____________________________________172\n_____________|______________________________________|\n5'-CGG...AAAAC__________UAUUCUGAUAA_______A_________ACAUU...CCA-3'\n______________UGCAAAUACA___________AACGCAA___UACAACC\n______________||||||:|||___________|||:|||___:||||||\n______________ACGUUUGUGU___________UUGUGUU___GUGUUGG\n3'-UUU...GGUUA__________UG________________GUA_______CAUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________62\n |
165 -- 171 |
63 -- 69 |
-26.3361 kcal/mol |
2.66287 kcal/mol |
8.61685 kcal/mol |
135 172@LB@ | |@LB@5'-CGG...AAAAC UAUUCUGAUAA A ACAUU...CCA-3'@LB@ UGCAAAUACA AACGCAA UACAACC@LB@ ||||||:||| |||:||| :||||||@LB@ ACGUUUGUGU UUGUGUU GUGUUGG@LB@3'-UUU...GGUUA UG GUA CAUUC...UCA-5'@LB@ | |@LB@ 92 62@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -26.3361 kcal/mol@LB@Unfolding Energy - mRNA 2.66287 kcal/mol@LB@Unfolding Energy - sRNA 8.61685 kcal/mol@LB@@LB@Position - mRNA 136 -- 171@LB@Position - sRNA 63 -- 91@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 63 -- 69@LB@ |
39 |
0.001399 |
0.1215 |
stm4007 |
glnA |
-20.44 |
0.014679 |
143 -- 217 |
36 -- 106 |
type I glutamate--ammonia ligase |
|
_____________142_____________________________________________________________________________218\n_____________|_______________________________________________________________________________|\n5'-CAC...CAGCA______A_____UC____UAC_____________C___G_C___U___GGA____A____UAU_______U________UUUGA...CGA-3'\n______________GAAUUG_AGAUC____GU___CACGACGAC_CGA_CAU_A_CAA_CCG___GAGU_CAAG___GUCCG_C_GAACACGU\n______________||||:|_|||:|____|:___|||:||:||_|:|_|||_|_|||_|||___:||:_|||:___|:||:_|_|||||||:\n______________CUUAGC_UCUGG____CG___GUGUUGUUG_GUU_GUA_U_GUU_GGC___UUCG_GUUU___CGGGU_G_CUUGUGCG\n3'-UUU...CCAGA______G_____UUAA__UUU_________U_______G_________A___________U_______A_U________UAAGG...UCA-5'\n_____________|_______________________________________________________________________________|\n_____________107_____________________________________________________________________________35\n |
211 -- 217 |
36 -- 42 |
-55.3576 kcal/mol |
10.964 kcal/mol |
31.8708 kcal/mol |
142 218@LB@ | |@LB@5'-CAC...CAGCA A UC UAC C G C U GGA A UAU U UUUGA...CGA-3'@LB@ GAAUUG AGAUC GU CACGACGAC CGA CAU A CAA CCG GAGU CAAG GUCCG C GAACACGU@LB@ ||||:| |||:| |: |||:||:|| |:| ||| | ||| ||| :||: |||: |:||: | |||||||:@LB@ CUUAGC UCUGG CG GUGUUGUUG GUU GUA U GUU GGC UUCG GUUU CGGGU G CUUGUGCG@LB@3'-UUU...CCAGA G UUAA UUU U G A U A U UAAGG...UCA-5'@LB@ | |@LB@ 107 35@LB@@LB@@LB@Energy -20.44 kcal/mol@LB@Hybridization Energy -55.3576 kcal/mol@LB@Unfolding Energy - mRNA 10.964 kcal/mol@LB@Unfolding Energy - sRNA 31.8708 kcal/mol@LB@@LB@Position - mRNA 143 -- 217@LB@Position - sRNA 36 -- 106@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 36 -- 42@LB@ |
65 |
0.003171 |
0.1596 |
stm0830 |
glnH |
-11.06 |
0.446113 |
180 -- 193 |
153 -- 165 |
glutamine ABC transporter substrate-binding protein GlnH |
|
_____________179____________194\n_____________|______________|\n5'-AGA...GCCCC_________AA___AAAUG...CGG-3'\n______________GUGGAUAGA__AGG\n______________:||||:|||__|||\n______________UACCUGUCU__UCC\n3'-UUU...AGUGA_________G____CAUUU...UCA-5'\n_____________|______________|\n_____________166____________152\n |
182 -- 188 |
157 -- 163 |
-15.2236 kcal/mol |
3.11192 kcal/mol |
2.82582 kcal/mol |
179 194@LB@ | |@LB@5'-AGA...GCCCC AA AAAUG...CGG-3'@LB@ GUGGAUAGA AGG@LB@ :||||:||| |||@LB@ UACCUGUCU UCC@LB@3'-UUU...AGUGA G CAUUU...UCA-5'@LB@ | |@LB@ 166 152@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -15.2236 kcal/mol@LB@Unfolding Energy - mRNA 3.11192 kcal/mol@LB@Unfolding Energy - sRNA 2.82582 kcal/mol@LB@@LB@Position - mRNA 180 -- 193@LB@Position - sRNA 153 -- 165@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 157 -- 163@LB@ |
36 |
0.00125 |
0.1215 |
stm3523 |
glpR |
-16.55 |
0.065942 |
207 -- 266 |
37 -- 89 |
DeoR/GlpR family transcriptional regulator |
|
_____________206________________267\n_____________|__________________|\n5'-UUG...UGAAA__________________GCGAU...CGC-3'\n______________CAAACACAACGGCAUGAC\n______________||||||||||::||::||\n______________GUUUGUGUUGUUGUGUUG\n3'-UUU...UUAAC__________________UAGUG...UCA-5'\n_____________|__________________|\n_____________90_________________36\n |
218 -- 224 |
72 -- 78 |
-24.6143 kcal/mol |
5.8046 kcal/mol |
3.79561 kcal/mol |
206 267@LB@ | |@LB@5'-UUG...UGAAA GCGAU...CGC-3'@LB@ CAAACACAACGGCAUGAC@LB@ ||||||||||::||::||@LB@ GUUUGUGUUGUUGUGUUG@LB@3'-UUU...UUAAC UAGUG...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.6143 kcal/mol@LB@Unfolding Energy - mRNA 5.8046 kcal/mol@LB@Unfolding Energy - sRNA 3.79561 kcal/mol@LB@@LB@Position - mRNA 207 -- 266@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 72 -- 78@LB@ |
6 |
7.515e-05 |
0.04123 |
stm0665 |
gltI |
-17.87 |
0.039793 |
157 -- 199 |
35 -- 81 |
glutamate/aspartate transporter |
|
_____________156__________________200\n_____________|____________________|\n5'-CGA...UGCAG____UA______U_______GCUAU...CUG-3'\n______________GCAA__ACAACA_CACAAUA\n______________||||__||||||_|||||:|\n______________CGUU__UGUUGU_GUGUUGU\n3'-UUU...GUUAA____UG______U_______AGUGU...UCA-5'\n_____________|____________________|\n_____________82___________________34\n |
170 -- 176 |
71 -- 77 |
-19.9204 kcal/mol |
1.29616 kcal/mol |
3.80671 kcal/mol |
156 200@LB@ | |@LB@5'-CGA...UGCAG UA U GCUAU...CUG-3'@LB@ GCAA ACAACA CACAAUA@LB@ |||| |||||| |||||:|@LB@ CGUU UGUUGU GUGUUGU@LB@3'-UUU...GUUAA UG U AGUGU...UCA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -19.9204 kcal/mol@LB@Unfolding Energy - mRNA 1.29616 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 157 -- 199@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 71 -- 77@LB@ |
150 |
0.007945 |
0.1845 |
stm2555 |
glyA |
-15.42 |
0.100951 |
252 -- 282 |
137 -- 168 |
serine hydroxymethyltransferase |
|
_____________251_________________________________283\n_____________|___________________________________|\n5'-CAC...GGCAG________________AA________GUC______AGCAC...UCG-3'\n______________GCUAUGGA___GCAGG__AAA_GUAC___AGGAAG\n______________:|||||||___:||||__|||_||||___||||||\n______________UGAUACCU___UGUCC__UUU_CAUG___UCCUUC\n3'-UUU...AUUAG________GUC_____CA___A_____________ACUUU...UCA-5'\n_____________|___________________________________|\n_____________169_________________________________136\n |
253 -- 259 |
161 -- 167 |
-28.2568 kcal/mol |
5.17684 kcal/mol |
6.91101 kcal/mol |
251 283@LB@ | |@LB@5'-CAC...GGCAG AA GUC AGCAC...UCG-3'@LB@ GCUAUGGA GCAGG AAA GUAC AGGAAG@LB@ :||||||| :|||| ||| |||| ||||||@LB@ UGAUACCU UGUCC UUU CAUG UCCUUC@LB@3'-UUU...AUUAG GUC CA A ACUUU...UCA-5'@LB@ | |@LB@ 169 136@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.2568 kcal/mol@LB@Unfolding Energy - mRNA 5.17684 kcal/mol@LB@Unfolding Energy - sRNA 6.91101 kcal/mol@LB@@LB@Position - mRNA 252 -- 282@LB@Position - sRNA 137 -- 168@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 161 -- 167@LB@ |
37 |
0.001263 |
0.1215 |
stm2511 |
guaB |
-22.14 |
0.007548 |
255 -- 298 |
35 -- 73 |
IMP dehydrogenase |
|
_____________254___________________________________________299\n_____________|_____________________________________________|\n5'-GGC...UUCCC_______UCC_____UUU______UACU___G___UC________GU-3'\n______________GC_UCAC___ACCGU___GCCGAA____GCC_AUC__AGCACGCA\n______________:|_||||___|||||___|||:||____|||_|||__|:||||||\n______________UG_AGUG___UGGCA___CGGUUU____CGG_UAG__UUGUGCGU\n3'-UUU...UGUGU__U____U_______UU_______U______G___UC________AAGGC...UCA-5'\n_____________|_____________________________________________|\n_____________74____________________________________________34\n |
292 -- 298 |
35 -- 41 |
-39.0524 kcal/mol |
5.99157 kcal/mol |
19.7557 kcal/mol |
254 299@LB@ | |@LB@5'-GGC...UUCCC UCC UUU UACU G UC GU-3'@LB@ GC UCAC ACCGU GCCGAA GCC AUC AGCACGCA@LB@ :| |||| ||||| |||:|| ||| ||| |:||||||@LB@ UG AGUG UGGCA CGGUUU CGG UAG UUGUGCGU@LB@3'-UUU...UGUGU U U UU U G UC AAGGC...UCA-5'@LB@ | |@LB@ 74 34@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -39.0524 kcal/mol@LB@Unfolding Energy - mRNA 5.99157 kcal/mol@LB@Unfolding Energy - sRNA 19.7557 kcal/mol@LB@@LB@Position - mRNA 255 -- 298@LB@Position - sRNA 35 -- 73@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 35 -- 41@LB@ |
115 |
0.005604 |
0.1728 |
stm0982 |
himD |
-16.93 |
0.057154 |
154 -- 192 |
37 -- 75 |
integration host factor subunit beta |
|
______________154________193\n______________|__________|\n___________5'-___________GGCUG...UGG-3'\n______________AACAACGCAAU\n______________||||||:|||:\n______________UUGUUGUGUUG\n3'-UUU...UUGUG___________UAGUG...UCA-5'\n_____________|___________|\n_____________76__________36\n |
5 -- 11 |
72 -- 78 |
-12.1177 kcal/mol |
1.51678 kcal/mol |
3.07616 kcal/mol |
154 193@LB@ | |@LB@ 5'- GGCUG...UGG-3'@LB@ AACAACGCAAU@LB@ ||||||:|||:@LB@ UUGUUGUGUUG@LB@3'-UUU...UUGUG UAGUG...UCA-5'@LB@ | |@LB@ 76 36@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -12.1177 kcal/mol@LB@Unfolding Energy - mRNA 1.51678 kcal/mol@LB@Unfolding Energy - sRNA 3.07616 kcal/mol@LB@@LB@Position - mRNA 154 -- 192@LB@Position - sRNA 37 -- 75@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 72 -- 78@LB@ |
149 |
0.007892 |
0.1845 |
stm2071 |
hisG |
-15.61 |
0.094042 |
166 -- 245 |
36 -- 100 |
ATP phosphoribosyltransferase |
|
_____________165________________________246\n_____________|__________________________|\n5'-UUU...AGACC__UU________A________G____ACGCA...AUU-3'\n______________GG__CAGACAGG_UAA____A_AGGA\n______________||__||||||||_|||____|_||||\n______________CC__GUCUGUCC_AUU____U_UCCU\n3'-UUU...UGAUA__U_________C___UACA_G____UCACU...UCA-5'\n_____________|__________________________|\n_____________101________________________35\n |
177 -- 183 |
153 -- 159 |
-19.7047 kcal/mol |
3.01127 kcal/mol |
3.70983 kcal/mol |
165 246@LB@ | |@LB@5'-UUU...AGACC UU A G ACGCA...AUU-3'@LB@ GG CAGACAGG UAA A AGGA@LB@ || |||||||| ||| | ||||@LB@ CC GUCUGUCC AUU U UCCU@LB@3'-UUU...UGAUA U C UACA G UCACU...UCA-5'@LB@ | |@LB@ 101 35@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -19.7047 kcal/mol@LB@Unfolding Energy - mRNA 3.01127 kcal/mol@LB@Unfolding Energy - sRNA 3.70983 kcal/mol@LB@@LB@Position - mRNA 166 -- 245@LB@Position - sRNA 36 -- 100@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 153 -- 159@LB@ |