189 |
0.01136 |
0.2116 |
b3413 |
gntX |
-9.78 |
0.152759 |
211 -- 235 |
52 -- 76 |
DNA catabolic protein |
|
_____________210_______________________236\n_____________|_________________________|\n5'-CCC...AACAG_______AUU__GC_____A_____AAUGC...AUA-3'\n______________UACCGGG___AU__UGGCU_UGCCG\n______________:|||:||___||__|||||_:||||\n______________GUGGUCC___UA__ACCGA_GCGGC\n3'-UUU...CGGUU_______CUU__GA_____C_____AUUUA...GUG-5'\n_____________|_________________________|\n_____________77________________________51\n |
211 -- 217 |
70 -- 76 |
-26.9968 kcal/mol |
7.94838 kcal/mol |
9.26585 kcal/mol |
210 236@LB@ | |@LB@5'-CCC...AACAG AUU GC A AAUGC...AUA-3'@LB@ UACCGGG AU UGGCU UGCCG@LB@ :|||:|| || ||||| :||||@LB@ GUGGUCC UA ACCGA GCGGC@LB@3'-UUU...CGGUU CUU GA C AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -26.9968 kcal/mol@LB@Unfolding Energy - mRNA 7.94838 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 211 -- 235@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 70 -- 76@LB@ |
111 |
0.005938 |
0.1855 |
b0962 |
helD |
-11.18 |
0.082726 |
7 -- 19 |
71 -- 82 |
DNA helicase IV |
|
_____________6_____________20\n_____________|_____________|\n_____5'-CAGAGU________G____CCCAG...GCC-3'\n______________CGCCAACA_CCAG\n______________||||||||_||||\n______________GCGGUUGU_GGUC\n3'-UUU...AUGAC_____________CCUUU...GUG-5'\n_____________|_____________|\n_____________83____________70\n |
8 -- 14 |
75 -- 81 |
-19.0718 kcal/mol |
1.18849 kcal/mol |
6.70061 kcal/mol |
6 20@LB@ | |@LB@ 5'-CAGAGU G CCCAG...GCC-3'@LB@ CGCCAACA CCAG@LB@ |||||||| ||||@LB@ GCGGUUGU GGUC@LB@3'-UUU...AUGAC CCUUU...GUG-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -11.18 kcal/mol@LB@Hybridization Energy -19.0718 kcal/mol@LB@Unfolding Energy - mRNA 1.18849 kcal/mol@LB@Unfolding Energy - sRNA 6.70061 kcal/mol@LB@@LB@Position - mRNA 7 -- 19@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 75 -- 81@LB@ |
77 |
0.00398 |
0.182 |
b2411 |
ligA |
-14.36 |
0.019662 |
79 -- 95 |
70 -- 86 |
DNA ligase NAD(+)-dependent |
|
_____________78________________96\n_____________|_________________|\n5'-GCA...CAGAA_______G_________ACAUC...CUG-3'\n______________AUUGCGC_AGUACCAGG\n______________|:|||||_|::||||||\n______________UGACGCG_UUGUGGUCC\n3'-UUU...GCUUA_______G_________CUUUA...GUG-5'\n_____________|_________________|\n_____________87________________69\n |
89 -- 95 |
70 -- 76 |
-25.4632 kcal/mol |
3.82569 kcal/mol |
7.27772 kcal/mol |
78 96@LB@ | |@LB@5'-GCA...CAGAA G ACAUC...CUG-3'@LB@ AUUGCGC AGUACCAGG@LB@ |:||||| |::||||||@LB@ UGACGCG UUGUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -25.4632 kcal/mol@LB@Unfolding Energy - mRNA 3.82569 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 79 -- 95@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 70 -- 76@LB@ |
20 |
0.001165 |
0.1727 |
b1763 |
topB |
-8.06 |
0.310309 |
3 -- 10 |
34 -- 41 |
DNA topoisomerase III |
|
_____________2________11\n_____________|________|\n_________5'-UC________GAAAU...GUA-3'\n______________UGAUGGGU\n______________|||||:||\n______________ACUACUCA\n3'-UUU...AUAAU________AUGUU...GUG-5'\n_____________|________|\n_____________42_______33\n |
4 -- 10 |
34 -- 40 |
-9.5271 kcal/mol |
0.324007 kcal/mol |
1.14413 kcal/mol |
2 11@LB@ | |@LB@ 5'-UC GAAAU...GUA-3'@LB@ UGAUGGGU@LB@ |||||:||@LB@ ACUACUCA@LB@3'-UUU...AUAAU AUGUU...GUG-5'@LB@ | |@LB@ 42 33@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -9.5271 kcal/mol@LB@Unfolding Energy - mRNA 0.324007 kcal/mol@LB@Unfolding Energy - sRNA 1.14413 kcal/mol@LB@@LB@Position - mRNA 3 -- 10@LB@Position - sRNA 34 -- 41@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
115 |
0.006085 |
0.1855 |
b3030 |
parE |
-11.34 |
0.077071 |
10 -- 31 |
65 -- 86 |
DNA topoisomerase IV subunit B |
|
_____________9______________________32\n_____________|______________________|\n5'-UUU...AUCUG_____UG_____GAC_______GAAGU...ACC-3'\n______________GCUGC__CAACA___GGGAGAU\n______________:||||__|||||___||||:||\n______________UGACG__GUUGU___CCCUUUA\n3'-UUU...GCUUA_____CG_____GGU_______GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
25 -- 31 |
65 -- 71 |
-24.4704 kcal/mol |
5.74549 kcal/mol |
7.38332 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...AUCUG UG GAC GAAGU...ACC-3'@LB@ GCUGC CAACA GGGAGAU@LB@ :|||| ||||| ||||:||@LB@ UGACG GUUGU CCCUUUA@LB@3'-UUU...GCUUA CG GGU GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.4704 kcal/mol@LB@Unfolding Energy - mRNA 5.74549 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 65 -- 71@LB@ |
21 |
0.001192 |
0.1727 |
b2526 |
hscA |
-14.48 |
0.018641 |
235 -- 259 |
63 -- 88 |
DnaK-like molecular chaperone specific for IscU |
|
_____________234________________________260\n_____________|__________________________|\n5'-AGC...UUUGA__________________C_UC____GGCGG...UGG-3'\n______________GUGCUGCGCC_GCAUCAG_G__GUCU\n______________:|:|||||||_:||:|||_|__:|||\n______________UAUGACGCGG_UGUGGUC_C__UAGA\n3'-UUU...GCGCU__________U_______C_UU____ACCGA...GUG-5'\n_____________|__________________________|\n_____________89_________________________62\n |
245 -- 251 |
71 -- 77 |
-31.0682 kcal/mol |
9.20475 kcal/mol |
7.38674 kcal/mol |
234 260@LB@ | |@LB@5'-AGC...UUUGA C UC GGCGG...UGG-3'@LB@ GUGCUGCGCC GCAUCAG G GUCU@LB@ :|:||||||| :||:||| | :|||@LB@ UAUGACGCGG UGUGGUC C UAGA@LB@3'-UUU...GCGCU U C UU ACCGA...GUG-5'@LB@ | |@LB@ 89 62@LB@@LB@@LB@Energy -14.48 kcal/mol@LB@Hybridization Energy -31.0682 kcal/mol@LB@Unfolding Energy - mRNA 9.20475 kcal/mol@LB@Unfolding Energy - sRNA 7.38674 kcal/mol@LB@@LB@Position - mRNA 235 -- 259@LB@Position - sRNA 63 -- 88@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 71 -- 77@LB@ |
190 |
0.01143 |
0.2119 |
b3233 |
yhcB |
-11.72 |
0.064941 |
161 -- 178 |
66 -- 81 |
DUF1043 family inner membrane-anchored protein |
|
_____________160________________179\n_____________|__________________|\n5'-UUU...CUGAA_________CUAC_____CAAAA...CGU-3'\n______________GCCAACACC____GGAAA\n______________|||||||||____|||||\n______________CGGUUGUGG____CCUUU\n3'-UUU...UGACG_________UC_______AGAAC...GUG-5'\n_____________|__________________|\n_____________82_________________65\n |
163 -- 169 |
73 -- 79 |
-21.1167 kcal/mol |
2.37182 kcal/mol |
7.0207 kcal/mol |
160 179@LB@ | |@LB@5'-UUU...CUGAA CUAC CAAAA...CGU-3'@LB@ GCCAACACC GGAAA@LB@ ||||||||| |||||@LB@ CGGUUGUGG CCUUU@LB@3'-UUU...UGACG UC AGAAC...GUG-5'@LB@ | |@LB@ 82 65@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -21.1167 kcal/mol@LB@Unfolding Energy - mRNA 2.37182 kcal/mol@LB@Unfolding Energy - sRNA 7.0207 kcal/mol@LB@@LB@Position - mRNA 161 -- 178@LB@Position - sRNA 66 -- 81@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 73 -- 79@LB@ |
172 |
0.0102 |
0.2071 |
b1383 |
ydbL |
-9.96 |
0.141752 |
21 -- 31 |
52 -- 62 |
DUF1318 family protein |
|
_____________20__________32\n_____________|___________|\n5'-AAA...UUUAC___________ACGUC...UAG-3'\n______________UGGCUGCGUUG\n______________||||||||::|\n______________ACCGACGCGGC\n3'-UUU...UUAGA___________AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
25 -- 31 |
52 -- 58 |
-19.6889 kcal/mol |
4.85225 kcal/mol |
4.8804 kcal/mol |
20 32@LB@ | |@LB@5'-AAA...UUUAC ACGUC...UAG-3'@LB@ UGGCUGCGUUG@LB@ ||||||||::|@LB@ ACCGACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -19.6889 kcal/mol@LB@Unfolding Energy - mRNA 4.85225 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 21 -- 31@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 52 -- 58@LB@ |
180 |
0.01069 |
0.2089 |
b4529 |
ydbJ |
-7.20 |
0.426635 |
222 -- 243 |
41 -- 61 |
DUF333 family putative lipoprotein |
|
_____________221____________________244\n_____________|______________________|\n5'-GCA...GGGUA__G_______C_UU________CGGCG...GUU-3'\n______________GG_UGUGCCG_U__AUUGUUGU\n______________||_||:||||_|__|||:||:|\n______________CC_ACGCGGC_A__UAAUAAUA\n3'-UUU...UAGAA__G_________UU________CUACU...GUG-5'\n_____________|______________________|\n_____________62_____________________40\n |
225 -- 231 |
52 -- 58 |
-21.8046 kcal/mol |
7.13894 kcal/mol |
7.46625 kcal/mol |
221 244@LB@ | |@LB@5'-GCA...GGGUA G C UU CGGCG...GUU-3'@LB@ GG UGUGCCG U AUUGUUGU@LB@ || ||:|||| | |||:||:|@LB@ CC ACGCGGC A UAAUAAUA@LB@3'-UUU...UAGAA G UU CUACU...GUG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -21.8046 kcal/mol@LB@Unfolding Energy - mRNA 7.13894 kcal/mol@LB@Unfolding Energy - sRNA 7.46625 kcal/mol@LB@@LB@Position - mRNA 222 -- 243@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 52 -- 58@LB@ |
140 |
0.008117 |
0.2031 |
b3221 |
yhcH |
-13.19 |
0.033484 |
158 -- 212 |
34 -- 73 |
DUF386 family protein cupin superfamily |
|
_____________157_____________________________________________________213\n_____________|_______________________________________________________|\n5'-AUC...UGAUG____UUUAC__GG___________UGGCCCAGGGAGAA_______G_________GAAGU...AAG-3'\n______________CAGG_____UU__GGCUGCGCUGU______________AAAUUAU_AUGAUGGGU\n______________||||_____|:__||||||||:||______________|||||||_||||||:||\n______________GUCC_____AG__CCGACGCGGCA______________UUUAAUA_UACUACUCA\n3'-UUU...UUGUG____CUUU___AA________________________________A_________AUGUU...GUG-5'\n_____________|_______________________________________________________|\n_____________74______________________________________________________33\n |
206 -- 212 |
34 -- 40 |
-41.3429 kcal/mol |
18.8865 kcal/mol |
9.26614 kcal/mol |
157 213@LB@ | |@LB@5'-AUC...UGAUG UUUAC GG UGGCCCAGGGAGAA G GAAGU...AAG-3'@LB@ CAGG UU GGCUGCGCUGU AAAUUAU AUGAUGGGU@LB@ |||| |: ||||||||:|| ||||||| ||||||:||@LB@ GUCC AG CCGACGCGGCA UUUAAUA UACUACUCA@LB@3'-UUU...UUGUG CUUU AA A AUGUU...GUG-5'@LB@ | |@LB@ 74 33@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -41.3429 kcal/mol@LB@Unfolding Energy - mRNA 18.8865 kcal/mol@LB@Unfolding Energy - sRNA 9.26614 kcal/mol@LB@@LB@Position - mRNA 158 -- 212@LB@Position - sRNA 34 -- 73@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 34 -- 40@LB@ |