180 |
0.007638 |
0.1495 |
b2007 |
yeeX |
-12.65 |
0.022752 |
43 -- 93 |
41 -- 87 |
UPF0265 family protein |
|
_____________42____________________________________________________94\n_____________|_____________________________________________________|\n5'-AUC...CUUCA______UCU______C___UUC_______C______UAAAG____U_______AAAAG...AAA-3'\n______________GAAUCA____UGCUG_UGC___GAUUCAG__AAGGA_____GGUA_GAUAGUG\n______________||||||____||||:_|||___:|||||:__|||||_____:|||_||:|:|:\n______________CUUAGU____ACGAU_ACG___UUAAGUU__UUCCU_____UCAU_CUGUUAU\n3'-UUU...GCAUG______UAAC_________UCA_______UU______________U_______ACCUC...ACG-5'\n_____________|_____________________________________________________|\n_____________88____________________________________________________40\n |
87 -- 93 |
41 -- 47 |
-32.6236 kcal/mol |
14.1148 kcal/mol |
5.85929 kcal/mol |
42 94@LB@ | |@LB@5'-AUC...CUUCA UCU C UUC C UAAAG U AAAAG...AAA-3'@LB@ GAAUCA UGCUG UGC GAUUCAG AAGGA GGUA GAUAGUG@LB@ |||||| ||||: ||| :|||||: ||||| :||| ||:|:|:@LB@ CUUAGU ACGAU ACG UUAAGUU UUCCU UCAU CUGUUAU@LB@3'-UUU...GCAUG UAAC UCA UU U ACCUC...ACG-5'@LB@ | |@LB@ 88 40@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -32.6236 kcal/mol@LB@Unfolding Energy - mRNA 14.1148 kcal/mol@LB@Unfolding Energy - sRNA 5.85929 kcal/mol@LB@@LB@Position - mRNA 43 -- 93@LB@Position - sRNA 41 -- 87@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 41 -- 47@LB@ |
192 |
0.008587 |
0.1548 |
b2366 |
dsdA |
-12.64 |
0.022913 |
191 -- 232 |
21 -- 49 |
D-serine dehydratase |
|
_____________190________________________________________233\n_____________|__________________________________________|\n5'-AUU...GCAAA______UAC______AAA___UAAAAUGAACU__________CCAGU...CCU-3'\n______________GAGACG___UAUGGA___CGC___________CGCUCAUCGC\n______________:||||:___||||||___|||___________|||:||||||\n______________UUCUGU___AUACCU___GCG___________GCGGGUAGCG\n3'-UUU...CUUCA______U________C_____UU___________________AACUG...ACG-5'\n_____________|__________________________________________|\n_____________50_________________________________________20\n |
226 -- 232 |
21 -- 27 |
-32.1247 kcal/mol |
5.89431 kcal/mol |
13.5917 kcal/mol |
190 233@LB@ | |@LB@5'-AUU...GCAAA UAC AAA UAAAAUGAACU CCAGU...CCU-3'@LB@ GAGACG UAUGGA CGC CGCUCAUCGC@LB@ :||||: |||||| ||| |||:||||||@LB@ UUCUGU AUACCU GCG GCGGGUAGCG@LB@3'-UUU...CUUCA U C UU AACUG...ACG-5'@LB@ | |@LB@ 50 20@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -32.1247 kcal/mol@LB@Unfolding Energy - mRNA 5.89431 kcal/mol@LB@Unfolding Energy - sRNA 13.5917 kcal/mol@LB@@LB@Position - mRNA 191 -- 232@LB@Position - sRNA 21 -- 49@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 21 -- 27@LB@ |
33 |
0.0002072 |
0.02212 |
b2101 |
yegW |
-12.62 |
0.023301 |
188 -- 205 |
37 -- 56 |
putative DNA-binding transcriptional regulator |
|
_____________187__________________206\n_____________|____________________|\n5'-CGG...CCGGC_____A______________ACAAG...AAA-3'\n______________AGGAA__AAGACAA_AUGGA\n______________|||||__|||||||_|||||\n______________UCCUU__UUCUGUU_UACCU\n3'-UUU...UUUUU_____CA_______A_____CGCGU...ACG-5'\n_____________|____________________|\n_____________57___________________36\n |
194 -- 200 |
43 -- 49 |
-17.4469 kcal/mol |
1.13054 kcal/mol |
3.6645 kcal/mol |
187 206@LB@ | |@LB@5'-CGG...CCGGC A ACAAG...AAA-3'@LB@ AGGAA AAGACAA AUGGA@LB@ ||||| ||||||| |||||@LB@ UCCUU UUCUGUU UACCU@LB@3'-UUU...UUUUU CA A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -17.4469 kcal/mol@LB@Unfolding Energy - mRNA 1.13054 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
48 |
0.0005049 |
0.03706 |
b2331 |
smrB |
-12.55 |
0.024312 |
152 -- 200 |
43 -- 92 |
putative DNA endonuclease |
|
_____________151__________________________________________________201\n_____________|____________________________________________________|\n5'-UCA...GAUUG__C__________GUAAAC_______GAAAA_______UA___AC_______AUGAA...GAC-3'\n______________CG_UACGAGUCGG________UGUAG_____UUAGAAA__GAG___AGAUAA\n______________||_|||||:||::________||:||_____|:|:|||__||:___|||:||\n______________GC_AUGCUUAGUU________ACGUC_____AGUUUUU__CUU___UCUGUU\n3'-UUU...CCGCA_____________AACACGAU_____AUUA________UC___CAU______AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
158 -- 164 |
81 -- 87 |
-25.319 kcal/mol |
6.91043 kcal/mol |
5.86211 kcal/mol |
151 201@LB@ | |@LB@5'-UCA...GAUUG C GUAAAC GAAAA UA AC AUGAA...GAC-3'@LB@ CG UACGAGUCGG UGUAG UUAGAAA GAG AGAUAA@LB@ || |||||:||:: ||:|| |:|:||| ||: |||:||@LB@ GC AUGCUUAGUU ACGUC AGUUUUU CUU UCUGUU@LB@3'-UUU...CCGCA AACACGAU AUUA UC CAU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -25.319 kcal/mol@LB@Unfolding Energy - mRNA 6.91043 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 152 -- 200@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 81 -- 87@LB@ |
30 |
0.0001707 |
0.01997 |
b1847 |
yebF |
-12.53 |
0.024655 |
175 -- 194 |
68 -- 88 |
extracellular Colicin M immunity family protein |
|
_____________174___________________195\n_____________|_____________________|\n5'-AAC...UCUCC__________________G__AAAAA...CAA-3'\n______________UGAAUC_AUUGUGCUAUG_AG\n______________:|||||_|||||||||||_||\n______________GCUUAG_UAACACGAUAC_UC\n3'-UUU...AGCAU______U___________G__AUUAA...ACG-5'\n_____________|_____________________|\n_____________89____________________67\n |
185 -- 191 |
71 -- 77 |
-25.1828 kcal/mol |
8.15856 kcal/mol |
4.50023 kcal/mol |
174 195@LB@ | |@LB@5'-AAC...UCUCC G AAAAA...CAA-3'@LB@ UGAAUC AUUGUGCUAUG AG@LB@ :||||| ||||||||||| ||@LB@ GCUUAG UAACACGAUAC UC@LB@3'-UUU...AGCAU U G AUUAA...ACG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -25.1828 kcal/mol@LB@Unfolding Energy - mRNA 8.15856 kcal/mol@LB@Unfolding Energy - sRNA 4.50023 kcal/mol@LB@@LB@Position - mRNA 175 -- 194@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 71 -- 77@LB@ |
42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
67 |
0.00114 |
0.05992 |
b4141 |
yjeH |
-12.53 |
0.024616 |
129 -- 146 |
73 -- 89 |
putative transporter |
|
_____________128________________147\n_____________|__________________|\n5'-CAG...CAUAA_______U__________CCAUC...CUG-3'\n______________GCGAAUC_GAUUGUGCUA\n______________:||||||_:|||||||||\n______________UGCUUAG_UUAACACGAU\n3'-UUU...CAGCA__________________ACGUC...ACG-5'\n_____________|__________________|\n_____________90_________________72\n |
140 -- 146 |
73 -- 79 |
-22.1843 kcal/mol |
7.4128 kcal/mol |
2.24587 kcal/mol |
128 147@LB@ | |@LB@5'-CAG...CAUAA U CCAUC...CUG-3'@LB@ GCGAAUC GAUUGUGCUA@LB@ :|||||| :|||||||||@LB@ UGCUUAG UUAACACGAU@LB@3'-UUU...CAGCA ACGUC...ACG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -22.1843 kcal/mol@LB@Unfolding Energy - mRNA 7.4128 kcal/mol@LB@Unfolding Energy - sRNA 2.24587 kcal/mol@LB@@LB@Position - mRNA 129 -- 146@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 73 -- 79@LB@ |
21 |
6.29e-05 |
0.01049 |
b4040 |
ubiA |
-12.44 |
0.026053 |
187 -- 207 |
35 -- 59 |
p-hydroxybenzoate octaprenyltransferase |
|
_____________186_______________________208\n_____________|_________________________|\n5'-AGC...GUACU________AAA______________GGAGU...UAU-3'\n______________AAGAGGAA_______AAUAUGGAGU\n______________||:|||||_______|||||||||:\n______________UUUUCCUU_______UUAUACCUCG\n3'-UUU...AAGUU________CAUUCUG__________CGUUG...ACG-5'\n_____________|_________________________|\n_____________60________________________34\n |
201 -- 207 |
35 -- 41 |
-18.3412 kcal/mol |
1.63668 kcal/mol |
4.22714 kcal/mol |
186 208@LB@ | |@LB@5'-AGC...GUACU AAA GGAGU...UAU-3'@LB@ AAGAGGAA AAUAUGGAGU@LB@ ||:||||| |||||||||:@LB@ UUUUCCUU UUAUACCUCG@LB@3'-UUU...AAGUU CAUUCUG CGUUG...ACG-5'@LB@ | |@LB@ 60 34@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -18.3412 kcal/mol@LB@Unfolding Energy - mRNA 1.63668 kcal/mol@LB@Unfolding Energy - sRNA 4.22714 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 35 -- 59@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 35 -- 41@LB@ |
81 |
0.001932 |
0.08273 |
b2763 |
cysI |
-12.36 |
0.027367 |
234 -- 285 |
1 -- 58 |
sulfite reductase beta subunit NAD(P)-binding heme-binding |
|
_____________233_________________________________________________________286\n_____________|___________________________________________________________|\n5'-GAA...UGGUC_______AACU_____ACGCC__________AA______A___AA_____AC_______GCGGC...CGG-3'\n______________GAAGGAA____GACAG_____GAGCGC_AUG______GC_UGA____GCA__UACCUGC\n______________:||||||____||||:_____||||||_|:|______||_|||____|||__:||||||\n______________UUUCCUU____CUGUU_____CUCGCG_UGC______CG_ACU____CGU__GUGGACG\n3'-UUU...AGUUU_______CAUU_____AUAC_______U___GGGUAG__A___GCAA___AA_______-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
279 -- 285 |
1 -- 7 |
-40.3147 kcal/mol |
11.0832 kcal/mol |
16.8724 kcal/mol |
233 286@LB@ | |@LB@5'-GAA...UGGUC AACU ACGCC AA A AA AC GCGGC...CGG-3'@LB@ GAAGGAA GACAG GAGCGC AUG GC UGA GCA UACCUGC@LB@ :|||||| ||||: |||||| |:| || ||| ||| :||||||@LB@ UUUCCUU CUGUU CUCGCG UGC CG ACU CGU GUGGACG@LB@3'-UUU...AGUUU CAUU AUAC U GGGUAG A GCAA AA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -40.3147 kcal/mol@LB@Unfolding Energy - mRNA 11.0832 kcal/mol@LB@Unfolding Energy - sRNA 16.8724 kcal/mol@LB@@LB@Position - mRNA 234 -- 285@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 1 -- 7@LB@ |