54 |
0.003913 |
0.237 |
b0387 |
yaiI |
-8.67 |
0.221647 |
168 -- 177 |
9 -- 18 |
UPF0178 family protein |
|
_____________167________178\n_____________|__________|\n5'-CAC...GCGAC__________AUUAC...CAA-3'\n______________ACAAUAGAGG\n______________||||||:|||\n______________UGUUAUUUCC\n3'-UUU...GACAC__________GUAUAUUG-5'\n_____________|__________|\n_____________19_________8\n |
171 -- 177 |
9 -- 15 |
-10.6786 kcal/mol |
1.38452 kcal/mol |
0.627418 kcal/mol |
167 178@LB@ | |@LB@5'-CAC...GCGAC AUUAC...CAA-3'@LB@ ACAAUAGAGG@LB@ ||||||:|||@LB@ UGUUAUUUCC@LB@3'-UUU...GACAC GUAUAUUG-5'@LB@ | |@LB@ 19 8@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -10.6786 kcal/mol@LB@Unfolding Energy - mRNA 1.38452 kcal/mol@LB@Unfolding Energy - sRNA 0.627418 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 9 -- 18@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 9 -- 15@LB@ |
51 |
0.003814 |
0.237 |
b3888 |
yiiD |
-11.06 |
0.072417 |
149 -- 179 |
39 -- 72 |
GNAT family putative N-acetyltransferase |
|
_____________148_________________________________180\n_____________|___________________________________|\n5'-UUU...UGCGG_____CA__U______C___U______________CGUGA...AUC-3'\n______________AUAUG__GG___AUCG_UGG_CAAUG__AUGGCCC\n______________|||||__||___|||:_|||_|||||__|||||||\n______________UAUAC__CC___UAGU_ACC_GUUAC__UACCGGG\n3'-UUU...AAAAA_____AA__UUU____C_________GU_______UUGUC...UUG-5'\n_____________|___________________________________|\n_____________73__________________________________38\n |
173 -- 179 |
39 -- 45 |
-28.8621 kcal/mol |
10.5098 kcal/mol |
7.29447 kcal/mol |
148 180@LB@ | |@LB@5'-UUU...UGCGG CA U C U CGUGA...AUC-3'@LB@ AUAUG GG AUCG UGG CAAUG AUGGCCC@LB@ ||||| || |||: ||| ||||| |||||||@LB@ UAUAC CC UAGU ACC GUUAC UACCGGG@LB@3'-UUU...AAAAA AA UUU C GU UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.8621 kcal/mol@LB@Unfolding Energy - mRNA 10.5098 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 149 -- 179@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 39 -- 45@LB@ |
56 |
0.003989 |
0.237 |
b0453 |
ybaY |
-12.27 |
0.038324 |
59 -- 73 |
39 -- 55 |
outer membrane lipoprotein |
|
_____________58________________74\n_____________|_________________|\n5'-AAG...UCCGA_________________GAAUU...CAA-3'\n______________UGG__GUGCAAUGGUCU\n______________|||__:||||||||:|:\n______________ACC__UACGUUACCGGG\n3'-UUU...UAGUC___GU____________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
67 -- 73 |
39 -- 45 |
-20.8095 kcal/mol |
3.77686 kcal/mol |
4.76312 kcal/mol |
58 74@LB@ | |@LB@5'-AAG...UCCGA GAAUU...CAA-3'@LB@ UGG GUGCAAUGGUCU@LB@ ||| :||||||||:|:@LB@ ACC UACGUUACCGGG@LB@3'-UUU...UAGUC GU UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -20.8095 kcal/mol@LB@Unfolding Energy - mRNA 3.77686 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 59 -- 73@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
49 |
0.003464 |
0.237 |
b4260 |
pepA |
-9.32 |
0.166975 |
186 -- 204 |
42 -- 59 |
multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor |
|
_____________185__________________205\n_____________|____________________|\n5'-UUA...AAGAU____GA_C____________AGUUU...AAC-3'\n______________UCAG__G_GUAGUGCA_UGG\n______________||||__|_|:|:||||_|||\n______________AGUC__C_CGUUACGU_ACC\n3'-UUU...CUUUU____A___________U___GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
195 -- 201 |
46 -- 52 |
-17.4947 kcal/mol |
4.48384 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-UUA...AAGAU GA C AGUUU...AAC-3'@LB@ UCAG G GUAGUGCA UGG@LB@ |||| | |:|:|||| |||@LB@ AGUC C CGUUACGU ACC@LB@3'-UUU...CUUUU A U GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -17.4947 kcal/mol@LB@Unfolding Energy - mRNA 4.48384 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
57 |
0.004077 |
0.237 |
b4198 |
ulaF |
-9.90 |
0.127727 |
21 -- 37 |
42 -- 55 |
L-ribulose 5-phosphate 4-epimerase |
|
_____________20________________38\n_____________|_________________|\n5'-GUC...CCGUU_____AAG_________AUUUC...GCG-3'\n______________UGGCG___GUGUAGUGG\n______________||||:___:||:|:|||\n______________ACCGU___UACGUUACC\n3'-UUU...UAGUC_________________GGGUU...UUG-5'\n_____________|_________________|\n_____________56________________41\n |
31 -- 37 |
42 -- 48 |
-17.0201 kcal/mol |
3.6214 kcal/mol |
3.50097 kcal/mol |
20 38@LB@ | |@LB@5'-GUC...CCGUU AAG AUUUC...GCG-3'@LB@ UGGCG GUGUAGUGG@LB@ ||||: :||:|:|||@LB@ ACCGU UACGUUACC@LB@3'-UUU...UAGUC GGGUU...UUG-5'@LB@ | |@LB@ 56 41@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -17.0201 kcal/mol@LB@Unfolding Energy - mRNA 3.6214 kcal/mol@LB@Unfolding Energy - sRNA 3.50097 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 42 -- 55@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 42 -- 48@LB@ |
53 |
0.003903 |
0.237 |
b0946 |
zapC |
-7.74 |
0.322468 |
177 -- 206 |
45 -- 76 |
FtsZ stabilizer |
|
_____________176_________________________________207\n_____________|___________________________________|\n5'-AUU...UGCGG_______GG__AG______________A_______AUUAA...GUU-3'\n______________UUUUAUA__GU__GGGAGA_____GGC_GAUGCGA\n______________|||||||__||__||:|:|_____|||_:||||:|\n______________AAAAUAU__CA__CCUUUU_____CCG_UUACGUU\n3'-UUU...ACAGA_______A___A_______AGUCA___________ACCGG...UUG-5'\n_____________|___________________________________|\n_____________77__________________________________44\n |
200 -- 206 |
45 -- 51 |
-19.1898 kcal/mol |
6.23804 kcal/mol |
5.21532 kcal/mol |
176 207@LB@ | |@LB@5'-AUU...UGCGG GG AG A AUUAA...GUU-3'@LB@ UUUUAUA GU GGGAGA GGC GAUGCGA@LB@ ||||||| || ||:|:| ||| :||||:|@LB@ AAAAUAU CA CCUUUU CCG UUACGUU@LB@3'-UUU...ACAGA A A AGUCA ACCGG...UUG-5'@LB@ | |@LB@ 77 44@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -19.1898 kcal/mol@LB@Unfolding Energy - mRNA 6.23804 kcal/mol@LB@Unfolding Energy - sRNA 5.21532 kcal/mol@LB@@LB@Position - mRNA 177 -- 206@LB@Position - sRNA 45 -- 76@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 45 -- 51@LB@ |
48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
55 |
0.003921 |
0.237 |
b1781 |
yeaE |
-12.93 |
0.026626 |
223 -- 235 |
47 -- 59 |
aldo-keto reductase methylglyoxal to acetol NADPH-dependent |
|
_____________222___________236\n_____________|_____________|\n5'-GUU...UCAAU_____________CUCAC...CAG-3'\n______________UUAGUGGCGAUGU\n______________|:||||||:|||:\n______________AGUCACCGUUACG\n3'-UUU...CUUUU_____________UUACC...UUG-5'\n_____________|_____________|\n_____________60____________46\n |
229 -- 235 |
47 -- 53 |
-19.9127 kcal/mol |
3.5603 kcal/mol |
3.42309 kcal/mol |
222 236@LB@ | |@LB@5'-GUU...UCAAU CUCAC...CAG-3'@LB@ UUAGUGGCGAUGU@LB@ |:||||||:|||:@LB@ AGUCACCGUUACG@LB@3'-UUU...CUUUU UUACC...UUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -19.9127 kcal/mol@LB@Unfolding Energy - mRNA 3.5603 kcal/mol@LB@Unfolding Energy - sRNA 3.42309 kcal/mol@LB@@LB@Position - mRNA 223 -- 235@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 47 -- 53@LB@ |
59 |
0.004284 |
0.2442 |
b0094 |
ftsA |
-10.23 |
0.109208 |
176 -- 218 |
1 -- 63 |
ATP-binding cell division FtsK recruitment protein |
|
_____________175________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-AAU...GCAAC__________________CA___AG___________________________UCA_____ACG___AGAAA...UCA-3'\n______________AAAAUCAG_______GCA__GGC__AACA________________ACAAUGA___AGGCG___GAC\n______________||||||||_______|||__|||__||||________________|||||:|___||||:___:||\n______________UUUUAGUC_______CGU__CCG__UUGU________________UGUUAUU___UCCGU___UUG\n3'-UUU...CAACC________ACCGUUA___UA___GG____CUUUUAUUUUAGACAC_______________AUA___-5'\n_____________|_________________________________________________________________|\n_____________64________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-27.1283 kcal/mol |
4.74085 kcal/mol |
12.1605 kcal/mol |
175 219@LB@ | |@LB@5'-AAU...GCAAC CA AG UCA ACG AGAAA...UCA-3'@LB@ AAAAUCAG GCA GGC AACA ACAAUGA AGGCG GAC@LB@ |||||||| ||| ||| |||| |||||:| ||||: :||@LB@ UUUUAGUC CGU CCG UUGU UGUUAUU UCCGU UUG@LB@3'-UUU...CAACC ACCGUUA UA GG CUUUUAUUUUAGACAC AUA -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.1283 kcal/mol@LB@Unfolding Energy - mRNA 4.74085 kcal/mol@LB@Unfolding Energy - sRNA 12.1605 kcal/mol@LB@@LB@Position - mRNA 176 -- 218@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |