138 |
0.02324 |
0.5385 |
b1826 |
mgrB |
-8.64 |
0.179438 |
205 -- 238 |
60 -- 90 |
regulatory peptide for PhoPQ feedback inhibition |
|
_____________204__________________________________239\n_____________|____________________________________|\n5'-UAC...AGUGA___________A___G_CGUUC__________U___GUUGG...AAU-3'\n______________AAAAGUUU_CG_UGG_U_____UGGUUGU_CG_GGU\n______________|||||||:_||_|||_|_____|:|||:|_||_:||\n______________UUUUCAAG_GC_ACC_A_____AUCAAUA_GC_UCA\n3'-CGC...AGGCG________U__A___G_A___________A______ACUCU...AAG-5'\n_____________|____________________________________|\n_____________91___________________________________59\n |
226 -- 232 |
66 -- 72 |
-16.3224 kcal/mol |
5.97183 kcal/mol |
1.70935 kcal/mol |
204 239@LB@ | |@LB@5'-UAC...AGUGA A G CGUUC U GUUGG...AAU-3'@LB@ AAAAGUUU CG UGG U UGGUUGU CG GGU@LB@ |||||||: || ||| | |:|||:| || :||@LB@ UUUUCAAG GC ACC A AUCAAUA GC UCA@LB@3'-CGC...AGGCG U A G A A ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -16.3224 kcal/mol@LB@Unfolding Energy - mRNA 5.97183 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 66 -- 72@LB@ |
27 |
0.005053 |
0.5385 |
b2058 |
wcaB |
-11.44 |
0.059229 |
168 -- 190 |
61 -- 82 |
putative acyl transferase |
|
_____________167______________________191\n_____________|________________________|\n5'-ACC...GGCAA____C_____GA____________GGCGC...AGA-3'\n______________ACGU_UGGCU__UGG_UAUUCGGG\n______________||||_|||||__|:|_||||||:|\n______________UGCA_ACCGA__AUC_AUAAGCUC\n3'-CGC...UCAAG__________A____A________AACUC...AAG-5'\n_____________|________________________|\n_____________83_______________________60\n |
184 -- 190 |
61 -- 67 |
-21.3941 kcal/mol |
8.91056 kcal/mol |
1.03929 kcal/mol |
167 191@LB@ | |@LB@5'-ACC...GGCAA C GA GGCGC...AGA-3'@LB@ ACGU UGGCU UGG UAUUCGGG@LB@ |||| ||||| |:| ||||||:|@LB@ UGCA ACCGA AUC AUAAGCUC@LB@3'-CGC...UCAAG A A AACUC...AAG-5'@LB@ | |@LB@ 83 60@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.3941 kcal/mol@LB@Unfolding Energy - mRNA 8.91056 kcal/mol@LB@Unfolding Energy - sRNA 1.03929 kcal/mol@LB@@LB@Position - mRNA 168 -- 190@LB@Position - sRNA 61 -- 82@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 61 -- 67@LB@ |
30 |
0.005373 |
0.5385 |
b1624 |
ydgJ |
-10.76 |
0.078067 |
229 -- 247 |
61 -- 79 |
putative oxidoreductase |
|
_____________228_________________248\n_____________|___________________|\n5'-GUA...GUUGA____G_A_______G____CAAAA...CGG-3'\n______________UUGG_U_UGGUUAU_CGAG\n______________||||_|_|:|||||_||||\n______________AACC_A_AUCAAUA_GCUC\n3'-CGC...AGUGC____G_A_______A____AACUC...AAG-5'\n_____________|___________________|\n_____________80__________________60\n |
236 -- 242 |
66 -- 72 |
-16.8363 kcal/mol |
5.27817 kcal/mol |
0.798019 kcal/mol |
228 248@LB@ | |@LB@5'-GUA...GUUGA G A G CAAAA...CGG-3'@LB@ UUGG U UGGUUAU CGAG@LB@ |||| | |:||||| ||||@LB@ AACC A AUCAAUA GCUC@LB@3'-CGC...AGUGC G A A AACUC...AAG-5'@LB@ | |@LB@ 80 60@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -16.8363 kcal/mol@LB@Unfolding Energy - mRNA 5.27817 kcal/mol@LB@Unfolding Energy - sRNA 0.798019 kcal/mol@LB@@LB@Position - mRNA 229 -- 247@LB@Position - sRNA 61 -- 79@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 66 -- 72@LB@ |
67 |
0.01284 |
0.5385 |
b1294 |
sapA |
-9.42 |
0.132690 |
25 -- 48 |
61 -- 86 |
antimicrobial peptide transport ABC transporter periplasmic binding protein |
|
_____________24_________________________49\n_____________|__________________________|\n5'-UAC...AAGUU________GA___A_______A____AAAUC...ACA-3'\n______________GUUC_UGU__GUU_UAGUUAU__GAG\n______________||||_:||__|:|_|||||||__|||\n______________CAAG_GCA__CGA_AUCAAUA__CUC\n3'-CGC...GUUUU____U___AC___A_______AG___AACUC...AAG-5'\n_____________|__________________________|\n_____________87_________________________60\n |
38 -- 44 |
66 -- 72 |
-17.3513 kcal/mol |
6.21881 kcal/mol |
1.70915 kcal/mol |
24 49@LB@ | |@LB@5'-UAC...AAGUU GA A A AAAUC...ACA-3'@LB@ GUUC UGU GUU UAGUUAU GAG@LB@ |||| :|| |:| ||||||| |||@LB@ CAAG GCA CGA AUCAAUA CUC@LB@3'-CGC...GUUUU U AC A AG AACUC...AAG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -17.3513 kcal/mol@LB@Unfolding Energy - mRNA 6.21881 kcal/mol@LB@Unfolding Energy - sRNA 1.70915 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 66 -- 72@LB@ |
88 |
0.01545 |
0.5385 |
b3009 |
yghB |
-9.13 |
0.148475 |
202 -- 216 |
61 -- 78 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________201________________217\n_____________|__________________|\n5'-UCU...GUCCA_______________A__AUAUC...UUG-3'\n______________UGGCU___GUUAUUC_AG\n______________|||||___|||||||_||\n______________ACCGA___CAAUAAG_UC\n3'-CGC...GUGCA_____AAU_______C__AACUC...AAG-5'\n_____________|__________________|\n_____________79_________________60\n |
207 -- 213 |
64 -- 70 |
-14.1767 kcal/mol |
4.24529 kcal/mol |
0.796888 kcal/mol |
201 217@LB@ | |@LB@5'-UCU...GUCCA A AUAUC...UUG-3'@LB@ UGGCU GUUAUUC AG@LB@ ||||| ||||||| ||@LB@ ACCGA CAAUAAG UC@LB@3'-CGC...GUGCA AAU C AACUC...AAG-5'@LB@ | |@LB@ 79 60@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -14.1767 kcal/mol@LB@Unfolding Energy - mRNA 4.24529 kcal/mol@LB@Unfolding Energy - sRNA 0.796888 kcal/mol@LB@@LB@Position - mRNA 202 -- 216@LB@Position - sRNA 61 -- 78@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 64 -- 70@LB@ |
126 |
0.02177 |
0.5385 |
b4162 |
orn |
-9.93 |
0.108535 |
62 -- 89 |
61 -- 86 |
oligoribonuclease |
|
_____________61___________________________90\n_____________|____________________________|\n5'-ACA...UUGGC_______CG_C___GC___CCU__G___AGUUU...CCG-3'\n______________GUUCACG__G_GCU__UGG___UU_GAG\n______________|||||||__|_|||__|:|___||_|||\n______________CAAGUGC__C_CGA__AUC___AA_CUC\n3'-CGC...GUUUU_______AA_____A____AAU__G___AACUC...AAG-5'\n_____________|____________________________|\n_____________87___________________________60\n |
62 -- 68 |
80 -- 86 |
-20.598 kcal/mol |
8.95458 kcal/mol |
1.70915 kcal/mol |
61 90@LB@ | |@LB@5'-ACA...UUGGC CG C GC CCU G AGUUU...CCG-3'@LB@ GUUCACG G GCU UGG UU GAG@LB@ ||||||| | ||| |:| || |||@LB@ CAAGUGC C CGA AUC AA CUC@LB@3'-CGC...GUUUU AA A AAU G AACUC...AAG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -20.598 kcal/mol@LB@Unfolding Energy - mRNA 8.95458 kcal/mol@LB@Unfolding Energy - sRNA 1.70915 kcal/mol@LB@@LB@Position - mRNA 62 -- 89@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 80 -- 86@LB@ |
19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
28 |
0.005203 |
0.5385 |
b3308 |
rplE |
-12.95 |
0.031988 |
121 -- 134 |
62 -- 77 |
50S ribosomal subunit protein L5 |
|
_____________120______________135\n_____________|________________|\n5'-AAA...GUGUA________________AGACG...AGA-3'\n______________GGCUUUAG__AUUCGA\n______________||||||||__||||||\n______________CCGAAAUC__UAAGCU\n3'-CGC...UGCAA________AA______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
122 -- 128 |
70 -- 76 |
-17.2589 kcal/mol |
3.56808 kcal/mol |
0.736118 kcal/mol |
120 135@LB@ | |@LB@5'-AAA...GUGUA AGACG...AGA-3'@LB@ GGCUUUAG AUUCGA@LB@ |||||||| ||||||@LB@ CCGAAAUC UAAGCU@LB@3'-CGC...UGCAA AA CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -17.2589 kcal/mol@LB@Unfolding Energy - mRNA 3.56808 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 121 -- 134@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 70 -- 76@LB@ |
43 |
0.009109 |
0.5385 |
b2531 |
iscR |
-9.39 |
0.134324 |
275 -- 298 |
62 -- 87 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________274________________________299\n_____________|__________________________|\n5'-AUG...GGCCC___A__________GAUAUUUC____AC-3'\n______________GGU_C_CGUUGGCU_________CGA\n______________:||_|_||||||||_________|||\n______________UCA_G_GCAACCGA_________GCU\n3'-CGC...CGUUU___A_U________AAUCAAUAA___CAACU...AAG-5'\n_____________|__________________________|\n_____________88_________________________61\n |
281 -- 287 |
74 -- 80 |
-16.3089 kcal/mol |
5.20915 kcal/mol |
1.70771 kcal/mol |
274 299@LB@ | |@LB@5'-AUG...GGCCC A GAUAUUUC AC-3'@LB@ GGU C CGUUGGCU CGA@LB@ :|| | |||||||| |||@LB@ UCA G GCAACCGA GCU@LB@3'-CGC...CGUUU A U AAUCAAUAA CAACU...AAG-5'@LB@ | |@LB@ 88 61@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -16.3089 kcal/mol@LB@Unfolding Energy - mRNA 5.20915 kcal/mol@LB@Unfolding Energy - sRNA 1.70771 kcal/mol@LB@@LB@Position - mRNA 275 -- 298@LB@Position - sRNA 62 -- 87@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 74 -- 80@LB@ |
44 |
0.009138 |
0.5385 |
b4148 |
sugE |
-12.73 |
0.035076 |
273 -- 288 |
62 -- 77 |
multidrug efflux system protein |
|
_____________272______________289\n_____________|________________|\n5'-CGC...CCCAC_________C______CGCCG...UUA-3'\n______________GGCUUUAGU_GUUUGA\n______________|||||||||_:||:||\n______________CCGAAAUCA_UAAGCU\n3'-CGC...UGCAA_________A______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
275 -- 281 |
69 -- 75 |
-18.0703 kcal/mol |
4.60455 kcal/mol |
0.736118 kcal/mol |
272 289@LB@ | |@LB@5'-CGC...CCCAC C CGCCG...UUA-3'@LB@ GGCUUUAGU GUUUGA@LB@ ||||||||| :||:||@LB@ CCGAAAUCA UAAGCU@LB@3'-CGC...UGCAA A CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -18.0703 kcal/mol@LB@Unfolding Energy - mRNA 4.60455 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 273 -- 288@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 69 -- 75@LB@ |