161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
118 |
0.002082 |
0.07999 |
pa5066 |
hisI |
-12.42 |
0.050876 |
194 -- 221 |
100 -- 123 |
phosphoribosyl-AMP cyclohydrolase |
|
_____________193__________________________222\n_____________|____________________________|\n5'-CGA...CGUGG_______A___AAGAC_____G______AUUCA...GGA-3'\n______________AAAGACC_UGA_____UGGCU_GAUGAG\n______________|||:|||_|||_____|:||:_||||||\n______________UUUUUGG_ACU_____AUCGG_CUACUC\n3'-UUU...CCCAG_______C___A_________A______CUCUA...GUU-5'\n_____________|____________________________|\n_____________124__________________________99\n |
194 -- 200 |
117 -- 123 |
-21.0853 kcal/mol |
6.41847 kcal/mol |
2.24995 kcal/mol |
193 222@LB@ | |@LB@5'-CGA...CGUGG A AAGAC G AUUCA...GGA-3'@LB@ AAAGACC UGA UGGCU GAUGAG@LB@ |||:||| ||| |:||: ||||||@LB@ UUUUUGG ACU AUCGG CUACUC@LB@3'-UUU...CCCAG C A A CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -21.0853 kcal/mol@LB@Unfolding Energy - mRNA 6.41847 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 117 -- 123@LB@ |
160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
80 |
0.0008839 |
0.05078 |
pa0353 |
ilvD |
-13.41 |
0.028361 |
174 -- 187 |
107 -- 121 |
dihydroxy-acid dehydratase |
|
_____________173_____________188\n_____________|_______________|\n5'-UUC...AACCC_______________GCAGG...AGA-3'\n______________GAACC_UGAUUAGCC\n______________:||||_|||||||||\n______________UUUGG_ACUAAUCGG\n3'-UUU...CAGUU_____C_________ACUAC...GUU-5'\n_____________|_______________|\n_____________122_____________106\n |
181 -- 187 |
107 -- 113 |
-19.137 kcal/mol |
3.4906 kcal/mol |
2.23534 kcal/mol |
173 188@LB@ | |@LB@5'-UUC...AACCC GCAGG...AGA-3'@LB@ GAACC UGAUUAGCC@LB@ :|||| |||||||||@LB@ UUUGG ACUAAUCGG@LB@3'-UUU...CAGUU C ACUAC...GUU-5'@LB@ | |@LB@ 122 106@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -19.137 kcal/mol@LB@Unfolding Energy - mRNA 3.4906 kcal/mol@LB@Unfolding Energy - sRNA 2.23534 kcal/mol@LB@@LB@Position - mRNA 174 -- 187@LB@Position - sRNA 107 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 107 -- 113@LB@ |
153 |
0.003576 |
0.1073 |
pa5013 |
ilvE |
-11.20 |
0.098760 |
213 -- 229 |
103 -- 120 |
branched-chain amino acid aminotransferase |
|
_____________212________________230\n_____________|__________________|\n5'-UCU...UGGCC_____________G____CUGGU...AUG-3'\n______________GAUCGUGAU_GGC_UGAU\n______________:|:||||||_:||_||||\n______________UUGGCACUA_UCG_ACUA\n3'-UUU...AGUUU_________A___G____CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
215 -- 221 |
112 -- 118 |
-19.7956 kcal/mol |
6.35284 kcal/mol |
2.24268 kcal/mol |
212 230@LB@ | |@LB@5'-UCU...UGGCC G CUGGU...AUG-3'@LB@ GAUCGUGAU GGC UGAU@LB@ :|:|||||| :|| ||||@LB@ UUGGCACUA UCG ACUA@LB@3'-UUU...AGUUU A G CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.7956 kcal/mol@LB@Unfolding Energy - mRNA 6.35284 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 112 -- 118@LB@ |
3 |
1.464e-07 |
0.0002243 |
pa3814 |
iscS |
-11.38 |
0.090161 |
182 -- 237 |
39 -- 110 |
cysteine desulfurase |
|
_____________181___________________________________________________________________________238\n_____________|_____________________________________________________________________________|\n5'-CAC...GCGCC______U_______UUAC_____U__AAUUG________________AC____A_______________________CUCCC...UCG-3'\n______________AGCCUG___AGGAG_____CUGA_GA_____CCGA_________UCU__CUCG__UUAC_______UC_CGCGACCA\n______________||||||___|||||_____||||_||_____||||_________|||__|||:__||||_______||_||||||||\n______________UCGGAC___UCCUC_____GACU_CU_____GGCU_________AGA__GAGU__AAUG_______AG_GCGCUGGU\n3'-UUU...ACUAA______UAC_____UAUUA____U__CA_______GACGCACCC_________CG____GCCGACU__A________CAACU...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________111___________________________________________________________________________38\n |
231 -- 237 |
39 -- 45 |
-44.4171 kcal/mol |
9.67698 kcal/mol |
23.3669 kcal/mol |
181 238@LB@ | |@LB@5'-CAC...GCGCC U UUAC U AAUUG AC A CUCCC...UCG-3'@LB@ AGCCUG AGGAG CUGA GA CCGA UCU CUCG UUAC UC CGCGACCA@LB@ |||||| ||||| |||| || |||| ||| |||: |||| || ||||||||@LB@ UCGGAC UCCUC GACU CU GGCU AGA GAGU AAUG AG GCGCUGGU@LB@3'-UUU...ACUAA UAC UAUUA U CA GACGCACCC CG GCCGACU A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -44.4171 kcal/mol@LB@Unfolding Energy - mRNA 9.67698 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
154 |
0.003595 |
0.1073 |
pa3974 |
ladS |
-15.87 |
0.005612 |
181 -- 233 |
43 -- 89 |
lost adherence sensor LadS |
|
_____________180_________________________________________________________234\n_____________|___________________________________________________________|\n5'-CUU...CGUUC____________________CA__AUG_______________UUCUCUUUCU_______UUGCC...CCA-3'\n______________GAGGAG_C__ACUGCG_GGG__UC___CGGC__ACUGGCUGA__________UCUUGCG\n______________||:|||_|__||||||_|||__||___|:||__||:||||||__________|||:|||\n______________CUUCUC_G__UGACGC_CCC__AG___GUCG__UGGCCGACU__________AGAGCGC\n3'-UUU...UUAGA______A_GC______A___AG__A______AA__________________________UGGUC...GUU-5'\n_____________|___________________________________________________________|\n_____________90__________________________________________________________42\n |
227 -- 233 |
43 -- 49 |
-49.9041 kcal/mol |
15.1092 kcal/mol |
18.9299 kcal/mol |
180 234@LB@ | |@LB@5'-CUU...CGUUC CA AUG UUCUCUUUCU UUGCC...CCA-3'@LB@ GAGGAG C ACUGCG GGG UC CGGC ACUGGCUGA UCUUGCG@LB@ ||:||| | |||||| ||| || |:|| ||:|||||| |||:|||@LB@ CUUCUC G UGACGC CCC AG GUCG UGGCCGACU AGAGCGC@LB@3'-UUU...UUAGA A GC A AG A AA UGGUC...GUU-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -49.9041 kcal/mol@LB@Unfolding Energy - mRNA 15.1092 kcal/mol@LB@Unfolding Energy - sRNA 18.9299 kcal/mol@LB@@LB@Position - mRNA 181 -- 233@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 43 -- 49@LB@ |
84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
39 |
0.0001834 |
0.02162 |
pa3120 |
leuD |
-14.73 |
0.012246 |
171 -- 252 |
39 -- 118 |
isopropylmalate isomerase small subunit |
|
_____________170________________________________________________________________________________________253\n_____________|__________________________________________________________________________________________|\n5'-GGC...GAUGU___C_A____CUC______G___AACC_______AACCCUAUAC__A___GA_C________G________________A__________ACGUC...UCA-3'\n______________CCG_G_AUUG___GCCUGA_GAG____GAGAUGA__________CC_GAC__C___GGUCUC_UC_GCU__CC_GCUGG__UCGCG_CCA\n______________|||_|_|||:___||||||_|||____|||||:|__________||_|||__|___||||||_||_|||__||_||||:__|||||_|||\n______________GGC_C_UAAU___CGGACU_CUC____CUCUAUU__________GG_CUG__G___CCAGAG_AG_CGA__GG_CGACU__AGCGC_GGU\n3'-UUU...UUUUU___A_______________A______________AGACUUCUCA______AC_CAC_________U___AU__C_____AG_____U___CAACU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________119________________________________________________________________________________________38\n |
198 -- 204 |
93 -- 99 |
-62.4738 kcal/mol |
24.3406 kcal/mol |
23.4063 kcal/mol |
170 253@LB@ | |@LB@5'-GGC...GAUGU C A CUC G AACC AACCCUAUAC A GA C G A ACGUC...UCA-3'@LB@ CCG G AUUG GCCUGA GAG GAGAUGA CC GAC C GGUCUC UC GCU CC GCUGG UCGCG CCA@LB@ ||| | |||: |||||| ||| |||||:| || ||| | |||||| || ||| || ||||: ||||| |||@LB@ GGC C UAAU CGGACU CUC CUCUAUU GG CUG G CCAGAG AG CGA GG CGACU AGCGC GGU@LB@3'-UUU...UUUUU A A AGACUUCUCA AC CAC U AU C AG U CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -62.4738 kcal/mol@LB@Unfolding Energy - mRNA 24.3406 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 171 -- 252@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 93 -- 99@LB@ |